ccdc105 (ccdc105,LOC107752130,LOC107588197,LOC107730874,LOC107582268)


Basic Information

Item Value
gene id ccdc105
gene name ccdc105,LOC107752130,LOC107588197,LOC107730874,LOC107582268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19146993 ~ 19151898 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258208.1
GTGCGCGTCCCCCGAGGAACAGTTGCGTTGGAGACAACCAACACTTTTGAACCCAAACAGTTATACGGATTGTTCCACTGATGGTGAAGTAAAGTAGTTAAGTACCGTGATCATGAAGCGTCCGGTCCGGTGCCCTCCTCCTCCGGCTGCGGTCGTGGGTTCTAAAGGCTGGAGGGATGCCACTGTACGCTCGATCCTGCGCGCCGAGGACCTTCGGCGTCAAACTCACGCAGACCAGCTGCACTCATCTTCACGCTACCGCAGCCACAGCGTTGGGACCTTTACCTCCGGACTTCCTCGGTTAACAGATTATAGTGTAAACAGCAGCGTCGATAAGGAGCACAGGGAGAGCGACTCGGAAAAGAAAGAGGAATTCCGACCTAAATCCATTGGAAGTATGCTCACATCTGGAATTATTAGCGGGCCGTTCCCTCCGCCGGCCCTGCGTGATCAGAGTGCAGTGGTCAGCACAGGTATGGCGGGTGAATATATGCGGGGTGTTAGAGAGGTGGAGGGTCACCTGCGCAGGCAAGCAGGCAGGGTCACACAGGAGGGCACCAGGATGGAGCATCAGAGAGAACGACTGGAAAAATTGCTCCGCAGTCTTAGGAGAGCATTGCTGGTCAATCAAGAAAGTGCAGATGGCAGGAAGTTTCGACCGGCCACCACAGAGACAATACGGGATGGAGCAGATGATCTTCTACGCAATGAACGAAGAGGCCTGAATGTACTAAAACAAGAAATGGAGAGCATGTTGAAAAAGACTGTGACTCAACAACAGgttttGGCTGAGAGCAGCAAGCAGTTGTTGGATTGTGCCTTTGAGAGATCCATAGTAACAGAGCTGCTTCCTCAGCACGGCTCACTCTCAGCGTGTGTGAGAACGTACCCTCCTCCCCTCTCACTGAAACCTGACCCCACTGGACCATTCACTCCAGAGTGCAAACAGGCTTTGGATTCTTCATCAACAGTACTACGTCAATCTCAGCAGCTCAGAGAAAACATTTCACAAGCCATGAGGGATGTCATCAGTAAGCAAGCGGATATGCACCGTTCAGCCAGCGAGGCCCTGCGGAAGAAAATTAACGAGACTATCAACCTAGAGCAACATTTGACACTGAGCTCAGCTGCGACGAGACAGGCTATTTACCGCAAACAGAGACAGATGCAGTGTGCAGGCTACAGTCTTGGCAGAGCAAtgGGCCCAGTCTGCAGTGCTGATCTTTTTTGCCGTGAGAGACTGAGCAGGCCTATGACTCAGCTTTATGGGCGGCATTCAAGTTTTGGCCTTCCAGAATCCGAGCTCCTTACACAGGGCAGCACTATGCTCCGGAAACACCTGGAATCCTCAGGGAAAGAGATCGCAGAGCTGCAGGTCACTCATCAGCAGCTGGAGGATGATAAGCATGGAAAGCGTGCAGCAGCCAGTGTGGACTCTGCTGTGATCAGGCTGCGGAGAAGACTCGTACGTCCTCAGTCTGTCCGGCCTGCAACCAGTTAAAACTCTACTCTACATAAAAGATTGTACCTCACTTGCTGAAGTTTGAAATCTGGGGTGTTTTTAATTATCACACAAAGCTACCAAGTGGTGTTTGCAAAATAAGAGTATGGTGATTCTTTGCAATTTGAACGATATTGGgaaaatatacattcaaaatGCATGATAGATGCGTGCGTGTTTAAGATTGTCAACAAACCGAATGACACTCCGGCATTATTCAAATACTGGTGGCAGTATTAggaatgaattttattttacttctgaCTGATGATTTCCTGTATCACCACCaaagctttaaataaagatttacaGTACAGCTCTGATACACGTCACTACCAAGCAGAGTTGGAGTCATGATCAAGGTCTTGAGACTACATTAGCTCGGCCCTGAGTCTCAGACAAGACTGCAGTCCTGTTTTTAGACAACCAATTATAGACAActctaaaaagcaaaaaatatgctgttttttcagtTCTTTAAAATGGAATGGTCTTAAAGCATTTATCTTGTCTCTAACTCTGCCAGTAAAACAGCAATTTCTCTTTAACACAAACACTTAACATagaca

Function

symbol description
ccdc105 Orthologous to human CCDC105 (coiled-coil domain containing 105).

NR:

description
coiled-coil domain-containing protein 105

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258208.1 True 2070 mRNA 0.48 8 19146993 19151898

Neighbor

gene id symbol gene type direction distance location
si:ch73-95l15.5 si:ch73-95l15.5,LOC107752121,LOC107704750,LOC107683319,LOC107730848,LOC107586839,LOC107586854 coding upstream 568 19138126 ~ 19146425 (+)
ppt2a.2 LOC107730851,LOC107683375,LOC107582233,LOC107752135,LOC107704757,LOC107586894 coding upstream 9931 19133025 ~ 19137062 (+)
tnfb NA coding upstream 98132 19046483 ~ 19048861 (+)
lta NA coding upstream 106112 19035975 ~ 19040881 (+)
tspan13a tspan13a,LOC107704717,LOC107752827,LOC107582238,LOC107683454,LOC107730871,LOC107579983 coding upstream 141652 19002673 ~ 19005341 (+)
sesn3 sesn3,LOC107752092,LOC107704751,LOC107730838,LOC107582231,LOC107683379 coding downstream 18626 19170524 ~ 19183806 (+)
slc19a3a slc19a3a,LOC107704692,LOC107587814,LOC107752583,LOC107683425 coding downstream 35044 19186942 ~ 19192491 (+)
megf6 zgc:158328,LOC107752003,LOC107704746,LOC107587807 coding downstream 78740 19230638 ~ 19270908 (+)
trnav-aac_27 NA coding downstream 273219 19425117 ~ 19425189 (+)
nyap2a nyap2,nyap2a,LOC107704744,LOC107730860,LOC107683386,LOC107751997 coding downstream 282156 19434054 ~ 19469421 (+)
G107866 NA non-coding upstream 188218 18956820 ~ 18958775 (+)
G107874 NA non-coding upstream 198378 18948395 ~ 18948615 (+)
G107873 NA non-coding upstream 198935 18947718 ~ 18948058 (+)
G107872 NA non-coding upstream 199608 18947047 ~ 18947385 (+)
G107871 NA non-coding upstream 200112 18946537 ~ 18946881 (+)
G107996 NA non-coding downstream 19989 19171887 ~ 19221052 (+)
G107999 mrpl44 non-coding downstream 64983 19216881 ~ 19218097 (+)
G108011 LOC107752015,LOC107683384,LOC107582227,LOC107586802 non-coding downstream 70842 19222740 ~ 19227382 (+)
G108055 NA non-coding downstream 336328 19488226 ~ 19535847 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding downstream 363083 19514981 ~ 19517474 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 151002 18993345 ~ 18995991 (+)
G107777 NA other upstream 303138 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 351011 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 386496 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 388157 18756343 ~ 18758836 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 569386 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 1032222 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 1037135 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 1056272 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 2059912 21211810 ~ 21214493 (+)

Expression


Co-expression Network