jam3a (jam3a,LOC107699899,LOC107662760,LOC107597526,LOC107713445)


Basic Information

Item Value
gene id jam3a
gene name jam3a,LOC107699899,LOC107662760,LOC107597526,LOC107713445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11558013 ~ 11566017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258213.1
TCCTCTCTAACACTGCCATCTGGTGTTGAAAGGTGGCATTTATGCCAGGCGCATTAATTCGGctaatcatatttaatgtaaatacgTTCGTTCTTCGGTCACTCCCTTTTAATTCCAAATCCccttttaaactattaaaaaaatacgaCCACGTGTCCGAGACATTAGCCTGCGCCTAATGCTAATCACCGCATACTGACATAATTCTCGATTTAGATCTCAGACACGCTTAAGCACTATTTTAACACCCCCTCTTTCGGCGCAATCAACGTATCTAACATTAACGCTCATCATCAACCGGAAGTTCGCGAGCGCCTTCTCGGCCCCTCCTCTCTCTTCCGCTCAGATGTCCTTGTAGCTATGGAAACTCATCAGCGGCAGCATCCTCCAGTCCGTCCACCCCGTCGTCTGGACAGCTAAGCTAAATTCTGCGCGTAAAACATCTCCTCAAAATGGCGATCAAGCGTCAAGCGCTTTCCTCGGTGCTCTTTTCGTGGCTGTGCACCGGTTCAGCTTTTGCTGTAATTCTCAGAACAACTGAAAAATCAGTATGGACAAATGAATTTGAGTCGATTGAGTTGACCTGCTTGATAGAGTCCATTTCTACAAACAATCCCAGAATTGaatggaagaaaataaaaaatggcgTACCCAGCTATGTctatttccaaaataaaatttcaggtaaTTTGGAGCACAGGGCTTTGCTGAGAGAGCCTGCAAACCTTGTAATCCTGAACGCCAGCAGATCGGACACAGCTCAGTATCGCTGTGAGGTGGCAGCCATCGACGACCAGAAGCCCTTTGATGAAATACTAATCAGTCTCGCTGTAAGAGTGAAGCCGGTGATGCCCAGGTGTAGCGTGCCGGAGGCGGTTACGGTGGGCTCAAGCACTGAACTGCGCTGCATTGAGAACGAAGGCTTTCCGCAGTCACAGTATCAGTGGTACAAAAACAACGAGGAGCTGCCAGAAGACCCGAAAACCAGCAGCAAGTTCTACAATTCTTCATACACCATGAACACCGAGACTGGTTCCCTGGTAAaaattCGGTCGGTGAAGAAAGAGGATGCGGGTGAATACTTTTGCCAGGCCAGAAATGAGGCAGGATGGTCGAAATGCAGTCCTCAGATCATGGAAGTGTATGATCTGGACATTGTGGGAATATTCCTGAAGGTATTAGGTGGAGTGGCGGCGTTTATATTCGTCCTTGTGGGGATTTGTCAGATTCAGAAAAGTGGCTACTGTTCCTGCAAAGACCACAGGAAACCAAttacaaagtacCCCAGCATGAAAACAGGATGGACTACGCCAGTCCAGATGAGGGACATTTCCGCCACAAGTCCTCCTTTGTCATCTGAAGTCAAAGAAGAGGAGGCGAGCGCTCAAGCTGGGTCGAGGCCTCGTGAGCTGACTTTTGAACTGTCAAATTGTGGATTTTACGCAGAGGTGCGACTCGAGCCTCGTGGCTTGCCAAAGTTATTACAGAAAGGAAAACTACTGTGTTAAACAGGGAATTTTTACTCCccttattttgatttaaacgGACAGGACTCAAACACAGGTTTACTTAAAACACcacagtttatatataaaaatggctttCAGAACAACACTAAGATTTATAGTTATTACATGCATCTTGTGAAGTGAGGATCATTGTTGCAGCAAAACGAACACGACGTAAAAGATGGGGTTTTTATTGAGACTTTGCAAATAATTGTGAATTTCTGAATGTCTGTTGCACTTCAAATTGTAGCAAGGCTGAATCTGCATCCCGGTGCTGCTGTATGTTTGCCCAAAAATAGTCAACACGTAATACCGGTGCAAGAATTTACATGTCTTGAaggtaaatattatatttcccACCGGAGATATAGCGTGCGACTATGTGAAGAAGCCTGTCGGTGTAAATGTGTACAATGCCATGCCAAGACTGTTTTATCTCGGTCACTTTTGAGAAGAGTGTTAGTGTCTCCATACTAGTTATTGAGTTGAACCATAAATTTGTAGCATTTTAGTTTGAGATTCAATCGAACATCTCCTTGAAGTCAGTAGACTTGGCTGTGCAGGATGATTCATTTACTTAGTTTCGTTTTTTGAAATATTCCTCTAGATACAGATTACGCACTTGTGGGTTTTTCAGAGTGCCATTTCTGTGTTTAAGTGACCTTCAATgctttataattgttttatacgTTTTGGACATATTGTCCAggtgttattgttttaatctATTTATAATATCTAGGTATATTGTAGTTCACTCCAGAGTAGTAGTTAGACTGTGGGCCGTGTCACAAGAATAAAACTGATTATGTGGAAGTGATCGACATTGTCTatccatttattttgtttttaaaacatgtagcTATATATG

Function

symbol description
jam3a Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; lateral line primordium; and neural tube. Orthologous to human JAM3 (junctional adhesion molecule 3).

NR:

description
junctional adhesion molecule C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258213.1 True 2379 mRNA 0.43 10 11558013 11566017

Neighbor

gene id symbol gene type direction distance location
LOC122359584 NA coding upstream 178583 11377405 ~ 11379430 (+)
LOC122358473 LOC107701401,LOC107713429,LOC107582582,LOC107659936,LOC107717183 coding upstream 260293 11291353 ~ 11297720 (+)
LOC122358387 LOC107717180,LOC107597510,LOC107713465,LOC107582585 coding upstream 298632 11255323 ~ 11259381 (+)
LOC122359111 pou2af1,LOC107582583,LOC107717181,LOC107713464,LOC107597594 coding upstream 385810 11162084 ~ 11172203 (+)
LOC122359106 LOC107582581,LOC107713463,LOC107701416,LOC107597512,LOC107717185,LOC107659920 coding upstream 419389 11135353 ~ 11138624 (+)
vps26b vps26b,LOC107582573,LOC107699898,LOC107748589,LOC107597524,LOC107713444 coding downstream 1373 11567390 ~ 11573448 (+)
acad8 acad8,LOC107582571,LOC107713443 coding downstream 9553 11575570 ~ 11579639 (+)
zgc:77784 LOC107582568,LOC107662767,LOC107699896,LOC107748585,LOC107597576 coding downstream 89838 11655855 ~ 11704963 (+)
lim2.3 lim2.3,LOC107748598,LOC107699889,LOC107597599,LOC107662761,LOC108435296,LOC103047043,LOC108277938 coding downstream 145488 11711505 ~ 11713995 (+)
si:dkey-4p15.5 LOC107662772,LOC107729104,LOC107699895,LOC107597533,LOC107586295 coding downstream 152910 11718927 ~ 11725866 (+)
G105650 NA non-coding upstream 1715 11555878 ~ 11556298 (+)
LOC122358459 NA non-coding upstream 80474 11474428 ~ 11477539 (+)
G105587 LOC107748591,LOC107582621,LOC107713446 non-coding upstream 105975 11073323 ~ 11452038 (+)
G105628 NA non-coding upstream 219080 11338265 ~ 11338933 (+)
G105623 LOC107729090,LOC107662800,LOC107586245 non-coding upstream 226713 11330420 ~ 11331300 (+)
G105730 NA non-coding downstream 160530 11726547 ~ 11729150 (+)
G105736 NA non-coding downstream 187510 11753527 ~ 11755519 (+)
G105739 NA non-coding downstream 196378 11762395 ~ 11762689 (+)
G105819 exoc3l2b,LOC107662783,LOC107586290,LOC107729130,LOC107597542 non-coding downstream 335334 11901351 ~ 11903829 (+)
G105860 NA non-coding downstream 504282 12070299 ~ 12070863 (+)
LOC122358628 NA other upstream 185322 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 829618 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1167413 10353161 ~ 10390600 (+)
G105248 NA other upstream 1350561 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 1447570 10093455 ~ 10110443 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 461538 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 527940 12093957 ~ 12097646 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 1271565 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 2350556 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 2391180 13957197 ~ 13961807 (+)

Expression


Co-expression Network