sars2 (sars2,LOC107672413,LOC107758861,LOC107395008)



Basic Information


Item Value
gene id sars2
gene name sars2,LOC107672413,LOC107758861,LOC107395008
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8995892 ~ 9003262 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043258214.1
GCTCCTGTACAGTTAAACTGTCAACCCGTTCAGCATGGCGTCCTCCGTAAGGGCAGCTACACGGTTTTGCTCTTTGTATCTGCTAACGTCTTCGAGACACAATGTCAGCAGTCTGTTTAGACTGTCCCGCCGACCTAGTTCCTCTCGACCGGTCAGGAGCAGTCTGTACGAGCACGTGCTGGAAGGTTACAGTCACAAACCCAAACTGGACATGAGGAGTGTGTGCGAGGAGACGGATGCGGTGAAGCAGGAGGTGGAGAATCGGAAAGGAGATCTGCGGGCAGCTGATGTCGGACTTATTATCTCGGTATGGAAGGAACTACAGAAGGTGCAACAAGAAATATCAGATTTGGAGGCGAAAAAGGACAAGATCAGCGTCAAAGTCCGCGCTCTTGTGGATGAACACGACAAATCTACTTTGGCCAGTCTTAAGGAGTACACGAGCGCTAAGGAAGAGGGTAGAGCGATCAGAGAGAAACTGAGTCTGTTGTATGTGCAAAAGGGTGAGCTGGAGAAAGAACATTACTGCCGTGCCCTAAGGTTGCCCAACAGAACACATCCATGTGTGCCCGTCGGAGACGAGAGCCAGGCAAGGGTGGTTGAATCGGTCGGTCAGAAACGAGAATTTGATTTCAAACCAAAAGGCCATCTGCAAATTGGAGAGAGTCTTGATATCATAAGACaaagACGGCTTGCCCATGTGTCAGGGCACAGATCATACTATTTGATAGGTTTAGGGGCCAGGCTTCAGCTTGCCTTGCAGAATTATACCCTGGACCTGCTTCAGAAACGAGGCTTTATTCCCATGGTTGTTCCTGACATTCTGAAATCTGTGGTTTTTGAGGGTTGTGGGATGCAGCCTAATGCTCATAGATCACAGGTGTACTCTCTGGACCCTTCACGCTTTCCTGACCTTAATCTTGCTGGTACTGGGGAAGTGGGAGTGGCAGGTTATTTCATGGATCATGCTGTGAATCTGAATGATTTACCTGTCAGGACAGTCTGTAGTAGCACATGCTATCGAGCTGAAACAGATACAGGAAGAGAGCCGTGGGGGCTCTACAGAGTTCACCATTTTACCAAGGTTGAAATGTTTGGTGTGACTTTGAATGAGACGGGAGAGGAGAGTTCCCAATTGTTGGATGAATTTGTCACGTTACAGAAGGAGATTTTCTGTTCCCTAAAACTTCATTACAGAGTCTTGGATATGCCCACTCAAGAATTGGGGCCACCTGCCTTCCGGAAATATGATATTGAGGCATGGATGCCGGGACGTGGCAGCTTTGGAGAGATTTCCAGTGCCTCAAACTGCACAGACTACCAGAGTCGGCGCCTTAACATTCTCTATGAGGGAAATGATAGAAACCTTAAGTATGCACATACGGTTAATGCTACAGCGTGTGCTGTACCACGTACTGTCATTGCGATTTTGGAAACACACCAAACAAAGGAAGGGAAAGTCCTGGTTCCCGAAGTTTTGCAGCCCTACCTTGGATTGGAAGTGATAGAAAAACCTAAATACACTCCAATTAAATATATAGGACCAAACCAACCCAAGCGTCATATCTCATAATAACTTTTTGATAATATGTCAGACTCCAGGGAAGTACAGAGTTTGCTTTATTCTCAAAGGTGAATGCAATGTATATAGGTATTTGGCATAActatctaataaaataaaatgtttaatttccaAACCcacatttatgatttttaataaaatggcaTCAGTAACATCTCAGAATTTGTTTCTGAATTTTTGGTGTTCCTGTCTGTATGTGAATTATCACTGCCATAAGACATCAGgagcaaaaaaaagtaatacagatcataatttaatttctttcccCTCCATTTATCATGAATGCTAATTATTTGATCAATCTACTCCTAAGTGTGCGGTGCTGCTTCCACACCTGTCAACAGTGAAATTTAGGATAGCCATGGCATATATCAGCATGGATAATTTGATCATCAGGGATGGGAATCAAATGGTATTTAacaatttcttgtttttagtaTTTAGCAGTTACAATTACTcagtatgttatttatttcttagcAGTAATGGTTcttgttataattttatttgggTAAGACAATAGAGATgcctataaatacatttctttagaCTGCTATGCTGCAAAGATCACAAACCGAGCAAACACACGATGCATTTAGCCATAAGATGAAATGAAATGGCTGAATGTGAAGGGGATATCAGCAGCATATgcagataaaaatgaaagaacagaTCCGGACATAGCAGTTGGACGATTTAGTCTTATGTTCTGTTCTCCAATACTGCTTTTGGAGTTAAAAGGTAGAACAATATGACTTCATGGTGCAGAATAAacttgttatttttactttctttccGTACAAAAAGTATggtagcttcataatattacggttgaaccatGGCAGATGGAACATTcagatgatgtctttcatactttctgCACCTTGAAAGTGCCAAGTTTGTTAGTTAATGGGGTCACAAGCctctcagtttttatttttaaaaaattgtgttccaaagatgaacaaagcattCACAAGTTTGTAACGACTGAGAGGAAGAGATTAATGATGTTAATAAAATTCTTCACCTCTGGCTTCTTTCAA

Function


symbol description
sars2 Predicted to enable serine-tRNA ligase activity and tRNA binding activity. Predicted to be involved in mitochondrial seryl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Orthologous to human SARS2 (seryl-tRNA synthetase 2, mitochondrial).

NR:

description
serine--tRNA ligase, mitochondrial-like

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043258214.1 True 2628 mRNA 0.42 16 8995892 9003262

Neighbor


gene id symbol gene type direction distance location
fbxo46 si:dkey-114g7.4,LOC107672409,LOC107758538,LOC107561382,LOC107749655,LOC107678246,LOC107560627 coding upstream 15000 8975037 ~ 8980892 (+)
si:ch211-11n16.2 si:ch211-11n16.2,LOC107561380,LOC107678255,LOC107749652,LOC107672363,LOC108278225,LOC108442869,LOC105909327 coding upstream 78205 8908510 ~ 8917687 (+)
LOC122359549 zgc:162193,LOC107672386,LOC107749645,LOC107758488,LOC107678257,LOC107560630,LOC107561378 coding upstream 155976 8830993 ~ 8839916 (+)
LOC122359480 zgc:162193,LOC107672386,LOC107758488,LOC107561378,LOC107749645,LOC107678257,LOC107560630 coding upstream 178966 8785223 ~ 8816926 (+)
LOC122358601 LOC107749646,LOC107678243,LOC107560621 coding upstream 248127 8746577 ~ 8747765 (+)
b3gnt7 LOC107574760,LOC107732665,LOC107668660,LOC107668489,LOC107570457,LOC107720736 coding downstream 284742 9288004 ~ 9291404 (+)
LOC122359130 si:ch211-24o8.2,LOC107672367,LOC107582655,LOC107758805,LOC107752394,LOC107694021,LOC107588807 coding downstream 411689 9414951 ~ 9426410 (+)
LOC122359294 si:ch211-24o8.2,LOC107672367,LOC107582655,LOC107758805,LOC107752394,LOC107694021,LOC107588807 coding downstream 426182 9429444 ~ 9432324 (+)
diabloa LOC107752388,LOC107588772,LOC107694024,LOC107758583,LOC107672415 coding downstream 431147 9434409 ~ 9436796 (+)
nectin3a LOC107672414,LOC107758600,LOC107694025,LOC107752386,LOC107588797 coding downstream 434754 9438016 ~ 9468883 (+)
G104875 NA non-coding upstream 75728 8917987 ~ 8920164 (+)
G104524 NA non-coding upstream 115473 8862178 ~ 8880419 (+)
G104508 NA non-coding upstream 232440 8702073 ~ 8763452 (+)
G104504 NA non-coding upstream 337784 8608716 ~ 8658108 (+)
G104483 NA non-coding upstream 486086 8509581 ~ 8509806 (+)
G104925 NA non-coding downstream 226697 9229959 ~ 9230187 (+)
G104937 NA non-coding downstream 246685 9249947 ~ 9250408 (+)
G104973 NA non-coding downstream 388195 9391457 ~ 9391853 (+)
G104974 NA non-coding downstream 388879 9392141 ~ 9392569 (+)
G105002 NA non-coding downstream 539104 9542366 ~ 9543202 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other upstream 234476 8756327 ~ 8761416 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other upstream 243074 8747803 ~ 8752818 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other upstream 361921 8628860 ~ 8633971 (+)
G104466 cyp2y3 other upstream 578428 8401311 ~ 8417464 (+)
LOC122359395 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 1037477 7957364 ~ 7958415 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other downstream 249246 9252508 ~ 9280469 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 512693 9515955 ~ 9523974 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other downstream 546490 9549752 ~ 9552128 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other downstream 585527 9588789 ~ 9623972 (+)
G105011 NA other downstream 666372 9669634 ~ 9673345 (+)

Expression



Co-expression Network