nlk2 (nlk2,nlk,LOC106581270)


Basic Information

Item Value
gene id nlk2
gene name nlk2,nlk,LOC106581270
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16442906 ~ 16508088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258239.1
CGTAGCCGTAATGGCGCTAGCTTCCACACGCAACAAGGGCCTGTTTATTATGGCTGGACCGCCGTCTCTTCCTTTCGTCCGCTGATTGGCTGTGCTACTTCCGAAGCGGGACGCGATTGGCTCAGGGACCTGTCGATCAGAAGAGGAATAGACGGGTACCCAAGACGGCAGGGTTGCGCGTGTGCCTTCCCAGGTCCTAGCAGCACCATCCGGCGAGGGGGTGAGGACGCTGGCCGCCTGTTTTATGACTGCAAGGAACActggatgtttttattttgattttttcttCACTGGATATACATGCCCGCGATATTGAGCGCAGGAAAGCGGCACGCCGGCGAACGAGCACAGCGTTATCGATGGGGAAGATAAGTTGAAGGCTTCGGAAGAATGTTTTCCTTGTTTCGGGAAAACGGATTGCTCCGTTGATCAACGTGATGGGTGTTTCGAGGGGATTTTGACATTTGGAGCGGATCTGGAGCTATCCATCTACAGCTTCGGGCTCGAGCGCAACTGAAAGCGGCAACAGAGCGCCATACTGCAAAACAAGCTTCCCGGATCGATACAGTGTAGCAGTCTTTTCGCACGGGAGAATTGCGCgttttcatgtaaatgtaaacaagtAAGCTGGCGAGCAAGTACCAAGTCAGCAACGGTGGCCTGATTGAGATCCACGTAACTTCTGCAAACTGCATGCAGCCCTGGCGGTGGAAACAGGGCTGGATGAGCCCAAAATGGCAAATATGAAGAAATCTAAAAGATGAATGTTGCATTTCCCCCGTAACTTGTACTATCCACCTAATTTCCCTTTCCACAGAAGCCCGAGTTTCGAGCGAAGCAAGGTGCTCCTCATGCCTCCAACATGAGGGAGATTTAAGGCCGTGCGGAATTGATTTATTATGGGGGGAGCgcattattttgatttgatccctctctccttttttacttttcttttgtttaccctCCGCGAGGGCTTTCTCGGATGTCCGCGGTTGTCATTTTGCTAGTTTGCGACGTATAACGCGAAAGATCCTCCGAAGTAGGTCAGATCAAAGCTGGAGAGTTGTTAGTATGACACCTTTTCACGCTCATCTCGATGTACGCCGGACATTTCTGCTTTGATTTGACCCGTCGTTTGGCTCGATGACAGCCAAATGAGAGTTTGACATCTCGGCAGCCTCCCTCTCCATCTCGTTCgcctctttgttttgtttttccaccTCTCATTTCGGGCTGTTGAGCGAGCGAATGGCTCTGTGCGGAACGACGGCTTCCAATGCCGCGAAAATGATGGCTGCGTACAACGGCGGCACCGCGGCAGTGGCAGCGCATCACCCGCACCATCACCACCAGCTGCCCCATCTCCCACCACCCGCCCACCTCCACCACCATCACCACCCGGGCCAGCATCACCTCCAGCACCCCGGCTCGGCCGCCGCCGTGCACCCCGTGCAGCAGCACGCCTCCACGGCCGCGGCCGCCGCTGCTGCCGCTGCGGCGGCGGTGATGCTGAACCCGAGCCAGCAGCAGCCGTACTTCCCCTCGCCCGCTCCCGGACAAGCTCCGGGGCCGGCGGCCGCTGCAGCCCCAGCGCAAGTTCaagccgccgccgccgccgccgtgAAGGcgcatcaccaccaccaccaacaCTCGCATCACTTACAGCAACAGCTGGATATAGAGCCGGACAGACCGATCGGATACGGAGCTTTCGGCGTGGTTTGGTCAGTGACAGACCCCAGAGATGGCAAACGCGTGGCCCTCAAAAAGATGCCCAATGTCTTCCAAAACCTCGTCTCCTGCAAGAGGGTTTTCCGCGAGCTGAAGATGCTTTGTTTCTTCAAGCACGACAATGTGCTGTCAGCTCTGGATATTCTGCAGCCTCCACACATCGACTACTTTGAGGAAATTTATGTGGTGACAGAGTTGATGCAGAGTGACCTCCATAAGATCATCGTGTCTCCACAGCCCCTGAGCTCTGACCACGTCAAAGTCTTTCTCTACCAGATCCTCCGagGACTGAAGTATCTACACTCAGCTGGTATTTTACACAGAGACATTAAACCCGGCAACCTGTTGGTCAACAGCAATTGTGTGCTTAAGATTTGTGACTTTGGCCTGGCGAGAGTGGAGGAGCTGGACGAGTCGCGTCACATGACCCAGGAGGTGGTGACGCAGTACTACAGAGCGCCAGAGATCCTGATGGGGAGCAGGCACTATTCCAACGCCATCGACATCTGGTCTGTGGGCTGCATCTTTGCCGAGCTGCTTGGCCGACGCATCCTCTTCCAGGCCCAGAGTCCCATCCAACAGCTGGACTTGATCACAGATCTGCTGGGGACTCCGTCTCTGGAGGCCATGAGGACGGCGTGTGAGGGAGCCAGAGCTCACATCCTGAGAGGACCACATAAACAGCCCTCACTTCCTGTCCTGTACACCCTGTCCAGTCAAGCAACCCATGAGGCCGTTCACCTCCTCTGCAGGATGTTGGTCTTTGACCCATCAAAGCGGATCTCTGCGAAGGATGCCCTGGCACATCCGTACCTGGACGAAGGGCGTCTGCGGTACCACACCTGCATGTGCAAATGCTGCTACACCACTTCCTCTGGCCGCGTCTACACCAGTGACTTTGAGCCTGTCACCAACCCCAAGTTTGACGACGGCTTTGAGAAGAACCTGACGTCAGTTCGGCAGGTCAAAGAGATCATTCATCAGTTCATCCTGGAGCAGCAGAAGGGGAATCGGGTACCGCTCTGTATCAACCCCCAATCAGCTGCCTTCAAAAGCTTTATCAGCTCAACAGTAGCTCAGCCCTCTGAGATGCCTCCATCTCCTCTGGTTTGGGAGTAGCTGAGGACAGCGGAGAAGATGGCATGACAAACAGCGGCGGTGGACATCCCTCTGGCGGCCCGTCCCATGTCCACCCCTCGCCCCCTGGACTACTGACCCCCAGGCATCCCCAAACCTGCGTAGCATTTCACTGGAGTCTAGGACTAGCCATGTCgctgatatgtgtgtgtgtactgtaatACTTACTAAATGGAGTTTTATAGAAGCAACCACTGCTGATGAGTTCAAGCGGGACACGGGACGGGTGGGCATGGTCACGGGGGGTCCGTTCGTACATACCCACTGCTCTGCAGTAGTGTACTAAAGGTTCGTGAAGGGTATGAACCTGTACTTTCAGCAGACGAAGTCGACCCCTGTGGACTTGAATGTATTTTGAACAGCAGGGCGGCAGAGTCTGTGCGGTATCCCTGAAGGAAAACTCATCACAACTACATGTGCGAGTAATCacgctttatttattcatggaAACAGGAAGTGCAGTGCTTCATGTAGTACGGAAAGAAGGCGAGTTCCTCCGAATCCGTCTTTCGCTCATGCTAGAACCGGgggcgaaaaaaaaaacgctgtcCTCATTAGTAGCCTATTTGTTAGGCCCATCCATAGAAATTTGTGAATTTAGGTAACGGCCATTGTGAAAGGTGCGGTCACATTAACCGCTGCTCCGAATTTCATGCTCGACATCGAATCGTTTCAGGAATCCGTTTTGAAGAAAACTCCTGATGCAGAAGTAGTTGGTCATGTAAATTTGTCGCGCCGACCGACAGAAAGCTGCCTCATGCATAACTACTATTTTgggtgacaaaaaaaagtggaaaaatcGTCAGCGAAACTGAAATATCGCTAGTGTGACCGCATCTTACGAACTGTGACCACTCGTTCGGCTAGAGTGAGCTGCTCATTGCATTTATTGCCTTCAACGGCGGTGTGATTTTTACGActtttcttccatttttgcTGTCGTCTGCactcttcctttctttctctatcGATCTATCTTTGTTCGTATCTCGCTTTCCGTCTCATATTCAACTCTTCAAATCAGTATTCCTTAGCGCAGCACTTGGCAGAGATACTGATTCGTAGGCTTCTCTTAGTACTCCTGAATGTGGATGTGTTGTGTCAGTATTTAGTACTTCGGATCGGTGACTGAGCGGCACAACGACTAGAAAAGGATCCAAAGCATGCAAGATCGGGCCGAGGGAAaatgctcctttttttttttttttttttgcgaaggAGACTTTGTGAGCGTGTCCAGAAATCTCGCAGGTGCTTGTCTCCAATCGAGACTGAAAACCCAACTAGCATGTAGCGAAACGATATGGGGAGATTTGCGTTTTCAGATGAACCCTGCTCTCCCTGATGGAGTATGTAGAATAGCATGCAAACCAAATTAAAggctaaaaactaaaaaaaaaaaaggaaataaataaataataaagaaatgatgGGTTGAGCTGTTGGTCAACCGAACCATTC

Function

symbol description
nlk2 Predicted to enable MAP kinase activity. Acts upstream of or within midbrain development; peptidyl-threonine phosphorylation; and positive regulation of Wnt signaling pathway. Predicted to be active in cytoplasm and nucleus. Is expressed in head and midbrain. Orthologous to human NLK (nemo like kinase).
nlk Enables ubiquitin protein ligase binding activity. Involved in protein stabilization and transforming growth factor beta receptor signaling pathway. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus.

NR:

description
serine/threonine-protein kinase NLK isoform X1

GO: NA

KEGG:

id description
K04468 NLK; nemo like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258239.1 True 4329 mRNA 0.52 11 16442906 16508088

Neighbor

gene id symbol gene type direction distance location
nufip2 nufip2,LOC107714169,LOC107666195,LOC107592914,LOC107756500,LOC107587528,LOC107682614 coding upstream 9021 16423297 ~ 16433885 (+)
LOC122358452 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding upstream 194276 16244788 ~ 16248630 (+)
LOC122359064 LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107589737,LOC107756533 coding upstream 202550 16230809 ~ 16240356 (+)
zgc:153372 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding upstream 315263 16124547 ~ 16127643 (+)
nrip1a LOC107714172,LOC107587564,LOC107666194,LOC107682571,LOC107756533,LOC107589737 coding upstream 322340 16110508 ~ 16120566 (+)
nos2b nos2,LOC107588374,LOC107666185,LOC107756441 coding downstream 6260 16514348 ~ 16525658 (+)
mrps23 LOC107746708,LOC107588353,LOC107666184 coding downstream 17637 16525725 ~ 16528161 (+)
LOC122359007 NA coding downstream 297336 16805424 ~ 16807691 (+)
omgb LOC107587445,LOC107672106,LOC107746657,LOC107592923,LOC107682744,LOC107756362 coding downstream 301149 16809237 ~ 16816847 (+)
LOC122359144 LOC107588342,LOC107672102,LOC107683437,LOC107757408,LOC107592926,LOC556987,LOC108425804 coding downstream 450071 16958159 ~ 16959238 (+)
LOC122358549 NA non-coding upstream 85284 16336814 ~ 16357622 (+)
G107232 NA non-coding upstream 98251 16344382 ~ 16344655 (+)
G107145 NA non-coding upstream 275901 16139813 ~ 16167005 (+)
G107141 NA non-coding upstream 373165 16069484 ~ 16069741 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding upstream 440775 16000215 ~ 16002131 (+)
LOC122358872 NA non-coding downstream 21192 16529280 ~ 16578656 (+)
LOC122359009 NA non-coding downstream 274991 16783079 ~ 16787674 (+)
G107305 NA non-coding downstream 350147 16858235 ~ 16859096 (+)
G107307 NA non-coding downstream 351616 16859704 ~ 16860627 (+)
G107308 NA non-coding downstream 352682 16860770 ~ 16860988 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 206565 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 399641 16004869 ~ 16043265 (+)
G107107 NA other upstream 559396 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 730467 15706513 ~ 15712439 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 1514681 14912911 ~ 14928225 (+)
lyrm9 lyrm9,LOC107756492 other downstream 5220 16513308 ~ 16514221 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1281757 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 1323984 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 1536929 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 2248255 18756343 ~ 18758836 (+)

Expression


Co-expression Network