rhbdd1 (rhbdd1,LOC107683388,LOC107582224)


Basic Information

Item Value
gene id rhbdd1
gene name rhbdd1,LOC107683388,LOC107582224
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19510346 ~ 19514482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258254.1
ATCACTTCCGTGTTGACCACCCGACGAAACACGGGCGAAATGAAAGTAAAGTCTTACGTGTCCTACTGTTGATAGCTGATATTAAGAGTCGGGAGCGATACTTTACTCACAACACAACATCCAAACCAAGCGTAGGGACTTCAAAGCAGAAGCTGTCGTTCAGATGTTATGatgcGTAACAGACATAGAGGATCCAATATCGGCCTGCTCCTGCTGGCCTCTCAGGTTTTCCAGCTGGGAATCGACAACATCCCACCAGTCACTCTTGCAACACTAGGGCTGAATGTCTATTTGTTCTTGTTTCCTTTCAAACCTCTCATGCAGACATGTCTGAGCGTTCGAGAGGCGTACTGTCACAGAGGCTGGAGCCGTCTGCTGCTGTCGCCGTTTCACCACGCTGATGACATGCACTTGTACTTCAACATGGCCTCGCTTCTTTGGAAGGGCATCAAACTGGAGAGGAAGCTGGGAGGTCCCTGGTTCGGGTACCTgctctctgtcttctctctgcTCACCGGACTGGTCTACCTGCTCCTGGAGACAGGACTGACACACATGACCGAAGACTCTTCATATAGTTTACAGTGTGCAGTGGGCTTCTCAGGTGTTCTGTTCGGGCTGAAGGTGGTGAATAATCATTATCATCCAGGAGGGGTCACATACGTCATGGGGATGCCCGTAGCCAGTCGCTATGCCTGCTGGGTAGAGTTGGTCCTCATCCATATTATGAACCCCGGGACGTCATTTGTCGGGCACCTGGCTGGGATTCTGGTCGGTCTGCTCTATACGACAGGACCCCTAAAAAGCCTCATGAAAACCTGTGCAGGCTTTGTGACATCCAATGGGCAATATGGAGGACACCGAGCATATTACAATTCAGCAGGATACAGTGGATATGGAAACTCCCAGTATGGACAGCAGAGGTTTAATCCCAGGCACTATGGCGCCTCCAACAGGCAGCAGTATGACACGCGCACGCCCTCCGCACCGCCCCAGCATCCCTATACAGCAGGCCTATCAGAAGAAGAGCAGTATCAGGCAGCTGTCAGGGCCAGCCTGAATAACAGAGGTGGTTCTCCGCAGGCTAGATCATCGCACAACGCGTATGCCCACTCAAACCCAACTCCTGAAGAGATACGCAGGCTACGACTTCAGAGGTTTAACAGCTGAACAATCGGAGAATGTGACGCATAATGATAATACTACTATACTGTTTACATTAAAGACGACACTAAAAACAGTCCAGAGCTAACGGAGGAGATTCCTCCACTGCTGACTGGTTGTGTCACTGAATAGCTTCAATGCTGTTATCAGGAGGTTTCAAAGGTGGTTGTCTGTATTTCTAACTGCAGAGTTTGTACGCACATTTGCTTTGGCTCTCAATGCTGATGTCTTTGCATAAAGGTTGAACATTAATGacatactgtattttctttttgaagtttgtattttgtataagaTGATTTTGTCTGTGCCAATAAGTTTTACTAAGTATATGTAAAATCTCTCAAGCTTATATCACTTGTGTATTtccaaacatttcttattattaaataacttctacttttttgtaagaaagtatatattttaaataaacaaatcattctTATTCCGA

Function

symbol description
rhbdd1 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD1 (rhomboid domain containing 1).

NR:

description
rhomboid-related protein 4 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K09651 RHBDD1; rhomboid domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258254.1 True 1615 mRNA 0.46 8 19510346 19514482

Neighbor

gene id symbol gene type direction distance location
nyap2a nyap2,nyap2a,LOC107704744,LOC107730860,LOC107683386,LOC107751997 coding upstream 40925 19434054 ~ 19469421 (+)
trnav-aac_27 NA coding upstream 85157 19425117 ~ 19425189 (+)
megf6 zgc:158328,LOC107752003,LOC107704746,LOC107587807 coding upstream 239438 19230638 ~ 19270908 (+)
slc19a3a slc19a3a,LOC107704692,LOC107587814,LOC107752583,LOC107683425 coding upstream 317855 19186942 ~ 19192491 (+)
sesn3 sesn3,LOC107752092,LOC107704751,LOC107730838,LOC107582231,LOC107683379 coding upstream 326540 19170524 ~ 19183806 (+)
col4a3 LOC107586745,LOC107704742,LOC107739767,LOC107683429 coding downstream 36218 19550700 ~ 19578860 (+)
sst1.2 sst1.2,LOC107739785,LOC107704710,LOC107683457,LOC107721144,LOC107582289 coding downstream 66057 19580539 ~ 19582015 (+)
sst1.1 LOC107586749,LOC107582287,LOC106579799,LOC107704709,LOC107683458,LOC107721142 coding downstream 80523 19595005 ~ 19596303 (+)
masp1 LOC107586740,LOC107704738,LOC107739768,LOC107721148,LOC107683390,LOC107582221 coding downstream 92682 19607164 ~ 19617602 (+)
gmnc gmnc,LOC107704691,LOC107683460,LOC107739787,LOC107721147,LOC107587788 coding downstream 131027 19645509 ~ 19649706 (+)
G108011 LOC107752015,LOC107683384,LOC107582227,LOC107586802 non-coding upstream 282964 19222740 ~ 19227382 (+)
G107996 NA non-coding upstream 289294 19171887 ~ 19221052 (+)
G107999 mrpl44 non-coding upstream 292249 19216881 ~ 19218097 (+)
G107866 NA non-coding upstream 551571 18956820 ~ 18958775 (+)
G107874 NA non-coding upstream 561731 18948395 ~ 18948615 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding downstream 499 19514981 ~ 19517474 (+)
G108124 NA non-coding downstream 174681 19689163 ~ 19689951 (+)
G108154 LOC107694807,LOC107755381,LOC107582218,LOC107739770,LOC107704708,LOC107585797 non-coding downstream 216257 19730739 ~ 19735234 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding downstream 216936 19731418 ~ 19735895 (+)
G108207 NA non-coding downstream 399667 19914149 ~ 19914443 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 514355 18993345 ~ 18995991 (+)
G107777 NA other upstream 666491 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 714364 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 749849 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 751510 18756343 ~ 18758836 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 206802 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 669638 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 674551 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 693688 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1697328 21211810 ~ 21214493 (+)

Expression


Co-expression Network