nkapd1 (zgc:162339,LOC107717266,LOC107657245,LOC107601701,LOC107670955,LOC107709109,LOC107586236)


Basic Information

Item Value
gene id nkapd1
gene name zgc:162339,LOC107717266,LOC107657245,LOC107601701,LOC107670955,LOC107709109,LOC107586236
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12601165 ~ 12603760 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258308.1
AGGTTACGCAGGAAGTGATCTACCTATTTTTGATGCCACGTTCACGTTGCtcattacatttcacatttattgaATAACAGAAAGGCTTGATATCATGTCGAAAGTGTCTATGGGTAAAGTACTGCTCCGAAATGTCATCAGACACACAGACGCCCATAACAAGATTCAAGAGGAGTCTGAGATGTGGAAACTGAGGGATCTTGAGCGCCAGACCTCATCTGCACATCTCCCAAAGCAGAGGGGCCGCATGCACTGTGACCGTTACTTGGATGACTCCGAGGGGTCCCTGCGAGAGCGGCTTGGAGACAGGAGAGACGAGATGTccgagagagatgagagagaggcTCGGTACTGGTCGCGAAAACTGTATGAGTTCGAAGCCAATGACCCTGACAGATGGGGCCACAGCGGCTTTAAGGAGCTTTATCCAGAGGAATTTTATTCTGATGGggaaaaagactgcagtaatagtaaacacaaaaggaaaaaacacaaggacaaaCTAGACGCTGACATAGAGAAATCTTCCAAGAAGTCAtctaagaagaagaaaaagaaaaaggagaagaagagaCGAAAGACTACTGCCTCGGGCTCTGAGTCTTGCAGCGATGTGGAGGACACTGCCAGGAGGAAACAGAGGAGGAAGGGAGGGAAGAGCAAGCGGAGGAAAAAGgagcacaaaaacaaagacagaaccGAGGACAGCGACATGGAGGAAAGTCATTCTGACACAAGGACGAGAACGCACAGGAAGAGAGACTGCCCTGAAACAGACGCGCTGACCGAACCCCAAAGGAAGAAGCGCAAAAACTGGAAAGTAGCGAATGAGGAGAGATCAGAGGAGAGCTCTGATGCTTGACTTTTCAGTATTACCTTCAGTATGTCCCAGACTATGCTAACTCCAGATGTATTTTTTAACCGTACAtatcattcatattttgaagACTCTGATCATGGGTCTGGAATCAATAACTTGATCTCTATACCTCATCAAACAGACACTTGATGGCTTTTTTTCACCATGTTTTCATCCAGGGGAATTTGTCGAATTTTTATGAGGTTGTatgttttctaaacatttttaaatatctgtgaaaatgtttttttaatcattcgtCAGACTGAACCATTTTTATTGTCATAAAAAGCTCAGGTATTTTTCTACTA
>XM_043258309.1
GTTCACGTTGCtcattacatttcacatttattgaATAACAGAAAGGTCAGTTCATCCTTTACAGTTTTAAAACGCTGCGTTGCTTAATGACTGCTTGATATCATGTCGAAAGTGTCTATGGGTAAAGTACTGCTCCGAAATGTCATCAGACACACAGACGCCCATAACAAGATTCAAGAGGAGTCTGAGATGTGGAAACTGAGGGATCTTGAGCGCCAGACCTCATCTGCACATCTCCCAAAGCAGAGGGGCCGCATGCACTGTGACCGTTACTTGGATGACTCCGAGGGGTCCCTGCGAGAGCGGCTTGGAGACAGGAGAGACGAGATGTccgagagagatgagagagaggcTCGGTACTGGTCGCGAAAACTGTATGAGTTCGAAGCCAATGACCCTGACAGATGGGGCCACAGCGGCTTTAAGGAGCTTTATCCAGAGGAATTTTATTCTGATGGggaaaaagactgcagtaatagtaaacacaaaaggaaaaaacacaaggacaaaCTAGACGCTGACATAGAGAAATCTTCCAAGAAGTCAtctaagaagaagaaaaagaaaaaggagaagaagagaCGAAAGACTACTGCCTCGGGCTCTGAGTCTTGCAGCGATGTGGAGGACACTGCCAGGAGGAAACAGAGGAGGAAGGGAGGGAAGAGCAAGCGGAGGAAAAAGgagcacaaaaacaaagacagaaccGAGGACAGCGACATGGAGGAAAGTCATTCTGACACAAGGACGAGAACGCACAGGAAGAGAGACTGCCCTGAAACAGACGCGCTGACCGAACCCCAAAGGAAGAAGCGCAAAAACTGGAAAGTAGCGAATGAGGAGAGATCAGAGGAGAGCTCTGATGCTTGACTTTTCAGTATTACCTTCAGTATGTCCCAGACTATGCTAACTCCAGATGTATTTTTTAACCGTACAtatcattcatattttgaagACTCTGATCATGGGTCTGGAATCAATAACTTGATCTCTATACCTCATCAAACAGACACTTGATGGCTTTTTTTCACCATGTTTTCATCCAGGGGAATTTGTCGAATTTTTATGAGGTTGTatgttttctaaacatttttaaatatctgtgaaaatgtttttttaatcattcgtCAGACTGAACCATTTTTATTGTCATAAAAAGCTCAGGTATTTTTCTACTA

Function

NR:

description
uncharacterized protein C11orf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258308.1 False 1170 mRNA 0.44 6 12601165 12603760
XM_043258309.1 True 1178 mRNA 0.44 6 12601204 12603760

Neighbor

gene id symbol gene type direction distance location
ubash3bb ubash3bb,LOC107677523,LOC107709118,LOC107586242,LOC107601707,LOC107657259,LOC108436514,LOC108278382 coding upstream 182854 12404837 ~ 12418311 (+)
LOC122359162 gkup,LOC107709108,LOC107717281,LOC107657260,LOC107586304,LOC108436512 coding upstream 196472 12397761 ~ 12404693 (+)
usf1 usf1,LOC107601709,LOC107657261,LOC107717282,LOC107586305,LOC107677518 coding upstream 204017 12391134 ~ 12397148 (+)
ulk2 ulk2,LOC107662799,LOC107729108,LOC107717276,LOC107657566 coding upstream 357932 12215249 ~ 12243233 (+)
sgsm2 sgsm2,LOC107729122,LOC107728220 coding upstream 456974 12098635 ~ 12144191 (+)
ppp2r1bb ppp2r1b,ppp2r1a,LOC107601716,LOC107717285,LOC107657255,LOC107709127,LOC108436518 coding downstream 10221 12613981 ~ 12624657 (+)
LOC122359172 LOC107709130,LOC107586283,LOC107601702,LOC107657248,LOC107717258 coding downstream 63471 12667231 ~ 12675522 (+)
si:dkey-103g5.4 si:dkey-103g5.4,LOC107670965,LOC107657243,LOC107601718,LOC107717267,LOC107717259 coding downstream 76510 12680270 ~ 12701805 (+)
ttc12 LOC107709098,LOC107670956,LOC107717260,LOC107601681,LOC107657228 coding downstream 99690 12703450 ~ 12716484 (+)
LOC122359478 LOC107709099,LOC107586280,LOC107657254,LOC107657227,LOC101882848 coding downstream 114300 12718060 ~ 12726273 (+)
LOC122358874 NA non-coding upstream 19363 12580364 ~ 12581802 (+)
G105987 NA non-coding upstream 61723 12538531 ~ 12539442 (+)
G105908 LOC107586245,LOC107729088,LOC107662756,LOC107677520,LOC107586286,LOC107662753,LOC107729089,LOC107586244,LOC107657263 non-coding upstream 218880 12318283 ~ 12382285 (+)
G105910 LOC107586245,LOC107709114,LOC569025 non-coding upstream 219452 12366246 ~ 12381713 (+)
G105941 LOC107717280,LOC107657263,LOC107729090,LOC107662800 non-coding upstream 233148 12339627 ~ 12368017 (+)
G106161 NA non-coding downstream 134291 12738051 ~ 12741077 (+)
G106171 NA non-coding downstream 168035 12771795 ~ 12772070 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding downstream 169697 12773457 ~ 12780375 (+)
LOC122358384 NA non-coding downstream 341317 12945077 ~ 12955807 (+)
G106234 NA non-coding downstream 654476 13258236 ~ 13798248 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 503519 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 570616 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 1228474 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1872770 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 2210565 10353161 ~ 10390600 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 233822 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 1312813 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 1353437 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 2309151 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 3102753 15706513 ~ 15712439 (+)

Expression


Co-expression Network