LOC122358501 (LOC107690467,LOC107743726,LOC107585604,LOC107664918,LOC107718289)


Basic Information

Item Value
gene id LOC122358501
gene name LOC107690467,LOC107743726,LOC107585604,LOC107664918,LOC107718289
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13577002 ~ 13593679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258319.1
TACCGCCTTTATCACTATATATTTACAACAGTGCTCGCCTGCTCACGTTCAGCTGCGCCCATCTAGAGGGTAGAGCGAACTCAAACGTACCGTTcccagctaaaaaaaaactggatatCTCGCAAGGGGAGCCATAATTAATCCATTCTGGATGTACAGAAGCTGCTCTGTCTCTGTATGGAAAAATCGCTTACTTGTGAAAACATTGGTGCTTCTGTAGTGGAACATAGACTACTTTTGGGGACAGTATGTTCAACTTGATGAAAAAAGACAAGGAGAAGGATGGCGTCAGGAAGGAGAAAAAAGACAAGAGAGACCGGAGGGAACGAATGTCGGCAGCTGAGCTCCGAAGCCTGGATGAGATGAGCATGAGACGGGGTTTCTTCAATCTCAACCGGAGCTCCAAACGGGACTCCAAGAACAAGCTGGAGATCTCAAACCCGATACCTATCAAAGTCGCCAGCAGCACTGAGCTTAACCTGACCGACATCGAGTCGGATGGCCTCAGTAACCGTAGCAGCATGGTCTTGGATGCAGATCAGCTCAGCGCGGCCAGTTCCAGCGACGATCTGAAGGCTGACTACGGCCAAGATGGCCACCGGAGCTCTGTCAAGGAGCGGGCAGCCAGGTTTGGTTCCCTCGCCATGCAGAACTCGCAAATGGGTTCCATCATGAAGCGCTTCTCATTTTCTCAGAGGAATAAAGAAGAAAGTCCATCCGAGGGTTCCACACCTTCTGGGCAGAACTCGGCTGCTCCGTCTCCACAGGTAGAAACCAAGATCTTTGACCCCCAACGTAAGCCGAGTCTCCAGCATCATCAACATCATCAGCAGCCTTCTACTGGGAAGAAGGTGCGGATTCCTGAAATTGTGCATAAGACATTTCCAGCAGACCTCCGCTTGCCTGCTGTCGTGCCACCGCAGACGCCCGAAGTTCGGGAGCTGGTTCTTCAGAGGCGGAACACCGGGGATTTTGGCTTCTCTTTGCGGCGCACTACCATGTTGGACCGTGGCACGGATGGAGGGGTATATCGCAGAGTGGTCCACTTTGCGGAACCAGGTGCTGGTACCAAAGACCTGGCTCTTGGTTTGGTCCCCGGCGACCGGCTGGTGGAGATCAACGGGCGAAATGTGGAGAACAAGAACAGGGATGAGATCGTGGAGATGATTCGGCAATCGGGCGACACGGTTCGGCTGAAAGTTCAGCCCATCCTGGAGCTAAGCGAGCTGAGCCGATGCTGGCTGAGGAACACCGAAGGACTGCGGCGGGAAGCATTTGACgAAAGAAAGAAACCCGTACAGGtgtggaatgacatgagggtgacgaaatctacatttttgggttaactatccctttaacgt
>XM_043258320.1
ACCGCCTTTATCACTATATATTTACAACAGTGCTCGCCTGCTCACGTTCAGCTGCGCCCATCTAGAGGGTAGAGCGAACTCAAACGTACCGTTcccagctaaaaaaaaactggatatCTCGCAAGGGGAGCCATAATTAATCCATTCTGGATGTACAGAAGCTGCTCTGTCTCTGTATGGAAAAATCGCTTACTTGTGAAAACATTGGTGCTTCTGTAGTGGAACATAGACTACTTTTGGGGACAGTATGTTCAACTTGATGAAAAAAGACAAGGAGAAGGATGGCGTCAGGAAGGAGAAAAAAGACAAGAGAGACCGGAGGGAACGAATGTCGGCAGCTGAGCTCCGAAGCCTGGATGAGATGAGCATGAGACGGGGTTTCTTCAATCTCAACCGGAGCTCCAAACGGGACTCCAAGAACAAGCTGGAGATCTCAAACCCGATACCTATCAAAGTCGCCAGCAGCACTGAGCTTAACCTGACCGACATCGAGTCGGATGGCCTCAGTAACCGTAGCAGCATGGTCTTGGATGCAGATCAGCTCAGCGCGGCCAGTTCCAGCGACGATCTGAAGGCTGACTACGGCCAAGATGGCCACCGGAGCTCTGTCAAGGAGCGGGCAGCCAGGTTTGGTTCCCTCGCCATGCAGAACTCGCAAATGGGTTCCATCATGAAGCGCTTCTCATTTTCTCAGAGGAATAAAGAAGAAAGTCCATCCGAGGGTTCCACACCTTCTGGGCAGAACTCGGCTGCTCCGTCTCCACAGGTAGAAACCAAGATCTTTGACCCCCAACGTAAGCCGAGTCTCCAGCATCATCAACATCATCAGCAGCCTTCTACTGGGAAGAAGGTGCGGATTCCTGAAATTGTGCATAAGACATTTCCAGCAGACCTCCGCTTGCCTGCTGTCGTGCCACCGCAGACGCCCGAAGTTCGGGAGCTGGTTCTTCAGAGGCGGAACACCGGGGATTTTGGCTTCTCTTTGCGGCGCACTACCATGTTGGACCGTGGCACGGATGGAGGGGTATATCGCAGAGTGGTCCACTTTGCGGAACCAGGTGCTGGTACCAAAGACCTGGCTCTTGGTTTGGTCCCCGGCGACCGGCTGGTGGAGATCAACGGGCGAAATGTGGAGAACAAGAACAGGGATGAGATCGTGGAGATGATTCGGCAATCGGGCGACACGGTTCGGCTGAAAGTTCAGCCCATCCTGGAGCTAAGCGAGCTGAGCCGATGCTGGCTGAGGAACACCGAAGGACTGCGGCGGGAAGCATTTGACAAGAAAACAGCGAACATACAGGAAGTCCTCTATTCTTCTAGGCATTGACCAGTATAGCCAGGATGTCCTGAGATGGGTGTGAGGAAGCCAGAATGGGCACAGTACAGACCCCGCTGAAACAA
>XM_043258321.1
CCGCCTTTATCACTATATATTTACAACAGTGCTCGCCTGCTCACGTTCAGCTGCGCCCATCTAGAGGGTAGAGCGAACTCAAACGTACCGTTcccagctaaaaaaaaactggatatCTCGCAAGGGGAGCCATAATTAATCCATTCTGGATGTACAGAAGCTGCTCTGTCTCTGTATGGAAAAATCGCTTACTTGTGAAAACATTGGTGCTTCTGTAGTGGAACATAGACTACTTTTGGGGACAGTATGTTCAACTTGATGAAAAAAGACAAGGAGAAGGATGGCGTCAGGAAGGAGAAAAAAGACAAGAGAGACCGGAGGGAACGAATGTCGGCAGCTGAGCTCCGAAGCCTGGATGAGATGAGCATGAGACGGGGTTTCTTCAATCTCAACCGGAGCTCCAAACGGGACTCCAAGAACAAGCTGGAGATCTCAAACCCGATACCTATCAAAGTCGCCAGCAGCACTGAGCTTAACCTGACCGACATCGAGTCGGATGGCCTCAGTAACCGTAGCAGCATGGTCTTGGATGCAGATCAGCTCAGCGCGGCCAGTTCCAGCGACGATCTGAAGGCTGACTACGGCCAAGATGGCCACCGGAGCTCTGTCAAGGAGCGGGCAGCCAGGTTTGGTTCCCTCGCCATGCAGAACTCGCAAATGGGTTCCATCATGAAGCGCTTCTCATTTTCTCAGAGGAATAAAGAAGAAAGTCCATCCGAGGGTTCCACACCTTCTGGGCAGAACTCGGCTGCTCCGTCTCCACAGGTAGAAACCAAGATCTTTGACCCCCAACGTAAGCCGAGTCTCCAGCATCATCAACATCATCAGCAGCCTTCTACTGGGAAGAAGGTGCGGATTCCTGAAATTGTGCATAAGACATTTCCAGCAGACCTCCGCTTGCCTGCTGTCGTGCCACCGCAGACGCCCGAAGTTCGGGAGCTGGTTCTTCAGAGGCGGAACACCGGGGATTTTGGCTTCTCTTTGCGGCGCACTACCATGTTGGACCGTGGCACGGATGGAGGGGTATATCGCAGAGTGGTCCACTTTGCGGAACCAGGTGCTGGTACCAAAGACCTGGCTCTTGGTTTGGTCCCCGGCGACCGGCTGGTGGAGATCAACGGGCGAAATGTGGAGAACAAGAACAGGGATGAGATCGTGGAGATGATTCGGCAATCGGGCGACACGGTTCGGCTGAAAGTTCAGCCCATCCTGGAGCTAAGCGAGCTGAGCCGATGCTGGCTGAGGAACACCGAAGGACTGCGGCGGGAAGCATTTGACTCTGGGAGCTGAGAGCATTTACGCTAA

Function

NR:

description
PREDICTED: unconventional myosin-XVIIIa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258319.1 False 1361 mRNA 0.52 3 13577002 13591683
XM_043258320.1 True 1401 mRNA 0.53 3 13577003 13584007
XM_043258321.1 False 1305 mRNA 0.53 3 13577004 13593679

Neighbor

gene id symbol gene type direction distance location
si:ch1073-145m9.1 si:ch1073-145m9.1,LOC107592629,LOC107690475,LOC107718303,LOC107743751 coding upstream 12280 13560833 ~ 13564722 (+)
ift20 ift20,LOC107743753,LOC107585565,LOC107683839,LOC107601740,LOC107718287 coding upstream 63507 13511197 ~ 13513495 (+)
sae1 sae1,LOC107683835,LOC107585558,LOC107743692,LOC107690439,LOC107718284,LOC107601738 coding upstream 87891 13480966 ~ 13489111 (+)
klc3 klc3,LOC107743695,LOC107601696,LOC107718297,LOC107690445,LOC107683829,LOC107585554,LOC108425834 coding upstream 122437 13445845 ~ 13454565 (+)
mark4b si:dkey-31m14.7,mark4,LOC107585548,LOC107690446,LOC107683822,LOC107743699 coding upstream 141177 13399809 ~ 13435825 (+)
LOC122358500 LOC107718289 coding downstream 10412 13604091 ~ 13667411 (+)
LOC122359191 LOC107709114,LOC107677520,LOC107586244 coding downstream 158463 13752142 ~ 13756092 (+)
LOC122358866 cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 coding downstream 181385 13775064 ~ 13796845 (+)
pak4 pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790 coding downstream 368774 13962453 ~ 13975188 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding downstream 383165 13976844 ~ 13981992 (+)
G106276 ube4a,LOC107743704,LOC107718272 non-coding upstream 240325 13335308 ~ 13336677 (+)
LOC122358384 NA non-coding upstream 621195 12945077 ~ 12955807 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding upstream 796627 12773457 ~ 12780375 (+)
G106171 NA non-coding upstream 804932 12771795 ~ 12772070 (+)
G106161 NA non-coding upstream 835925 12738051 ~ 12741077 (+)
G106350 NA non-coding downstream 86501 13680180 ~ 13685449 (+)
G106354 NA non-coding downstream 98700 13692379 ~ 13692893 (+)
G106370 NA non-coding downstream 205622 13799301 ~ 13811099 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding downstream 288442 13882121 ~ 13884081 (+)
G106385 NA non-coding downstream 319900 13913579 ~ 13913790 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 728335 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1479356 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1546453 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 2204311 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 2848607 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 322894 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 363518 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1319232 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 2112834 15706513 ~ 15712439 (+)
G107107 NA other downstream 2287435 15881114 ~ 15883510 (+)

Expression


Co-expression Network