LOC122358600 (LOC107678237)



Basic Information


Item Value
gene id LOC122358600
gene name LOC107678237
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8720347 ~ 8727848 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043258483.1
ATGTCCTCTCTAACAGTCACAGAACTAAGTGCTGAGATCCAGGAGGACACTGTGCTTCTCAACTGGACAGCTCCTGGTGAGGACCTCGACCAAGAGACAGCTATGGACTCAAGAACGGTGTTTGTCTTATTATGGATGTTGCTGTTGTCCACCTCCTCTGGAATCAAACTGGATGGAAATGGTTATGTTGATGTTATAATCGCAATCGGTTCAAAAGTACCACAGGATGATAGACTTATTGATAAAATCAAGGAGATGGTCACTAAGAGGTCTATTTATCTTTATGAAGCACTGGATAAGAAAGTCTATTTCAAAGAAGCTACGATTCTAGTCCCATCCCACTGGAAGAGTGCGAATGTCAGCAAAGCAAGAACAGAGTCCTTTGAAAAAGCCAAAATAAGAATCGATAATGCTAATCCAGCATACGGAGATGAACCTTATACTTATCAATATGGAGAATGTGGAACTATGGCAGAGTACATTCATTTCACCCCAGAATACTTCTTAAATGACAGAcagtttggttgtttgttttcaggAAAGGTTTTTGTGCATGAATGGGCTCATCTGAGATGGGGTGTCTACGATGAATACAGTAAAGAAAACCCATTCTACTACTATAATGGCCGTATTGAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGTTACGGCTGGAGGATCTCTTCAGCCATGCCGTATAGATCCACAAACTTCACTACCTGCTGggaattgtacattttttccagacagaaatcaaaacacaaacagctCCTTAATGTTTCTACCAAGCCTGGATCCTgtGAACACATTCTGTCATGAAAATGAGCACAATTATGAAGCCCCaaacctgcagaataaaaaatgcagcaaaGCTACACGGACTGTAATATTTGAGGATTCTGTGGATAAAGATATTCTTTCTTCTCCAGATTCACTGCCGTCCCGTCCTCCACTGTCTTTCAAAGTTGTGCAGAGAATGCAACGGGTCGTTTGTCTTATCCTTGATGGCTCAGGAAGCATGGCAACaGATTCAAGACTGCTTCGACTGCAGCAGGCTGCCACACATTTCCTGCGAAACATCGTTGAGGATCAAGCCAGTGTTGGGATTGTAGACTTTAGTACTACTGCTTCTACTCTGAGTCCCTTGACTACTATTGACAGTAACACCACAAGAGAGAGTCTTATCAAATTGTTGCCGAAAGTAGCAGGTGGATCGACCAACATGTGTAAAGGTCTCAATCTAGGCCTACAgGTACTTCAACAGGACAATGGAGATGTATTAGGagatgaaataatttttttgactGATGGTGAGGCGACGGATAACATTAAAACGTGTAGCCCGACTGCAATAAACAGCGGTGTCATTATACACACAATAGCTTTAGGTCCTAAAGCAGATGAGGAACTGACAGTAATGGCAAACAAAACagGGGGAATATTTCTCACACCCAATGATAACTTCACAtctaacaatttaataaatgcgTTTGCTTCGGTTACATTATCAACTGGAGATTACACAAAGGAACCAGTTCAGCTTGAGAGTATTGGAGCACGAACATCTGATTGGTTCAATGGGACAGTATCGGTGGATCAGACTGTTGGGAACAAAACCAGCTTTGTGATAATCTATGAGAGAAGTTTTCCCAGCGTTTACATACAGTCTCCAAGTGGCTTAATCTACACTCAGACAAATATGAATCATGATGTATTGCTgagaactgtcactttaaatgttcCAGGAACTGCAGAGCCTGGTGACTGGGAGTACAGAATCCAAACTTCAACAAATCAGGCTTTGACTATAACAGTAACAAGTCAAGCTTCTCAAGCTGATGTTCCTCCTATCATTGAAACCCGCATGAACCAGCAGTTCAATGATGGCACTAAACCCATGATAGTGTTTGCTGAGGTTAGTCAGAATTACAAACCTGTAATAAATGCTGAAGTGCAGGCTACACTGGAGCCAGAAACTGGGCCCGCACAAACATTACAACTCCTGGACAACGGAGCAGGAGCTGATGCTGTTCAAGGTGATGGAATCTATTCCAGATACTTCACGCAGATGGTAAATGGAAGAAGCAGCTTGAAAGTAAGAGTGAAGAATCAAGATGGACAAACCAAATTTGCTGCCCGAAAAAACAGTAATGCCCCATATGTGCCTGGATATGTGGAAAATGgaGTAGTGCAGCTGAACCCTCCAAAGCCTCCAGTTTCTGAGGAACCAATTGAGATTGGAAACTTCACCAGAACAGCCACCGGAGAGAGTTTTGAGGTTGCTCTAAAAATGCAACTAAACAAATTTCCTCCGAACAGAATCACAGATCTGAGCGCTGAGATCCAGGAGGACACTGTGCTTCTCAGCTGGACAGCTCCTGGTGAGGACCTCGACCAAGGGACAGCTAAATCCTATGAGATCAGGTGGAGCTTTGACCTTGATGTGCTTCGAGAGAGCTTCAGCAATGGTCATTCGATCAAAACAACTGCTGTTTTACCTCAGGAGGCTGGATCATTTGAACAACATTCATTCAATCTCAGTTTCCCAATCCAAAATGGCACCACACTCTTCTTTGCGTTAGAGTCTGAGGACAAACTAAATGAGAAATCTAAAACCTCCAACATTGCTCAAGCTTCAAAGATCCTCCCTGGTCCAAAACCTCCAGGAATATCAAACCCAGGCATTAACTTGACAGTTCttgttatttctgtgtgtgtggtaaCTGTGGTCATATGCTTTATTGTTGCTGTAATCACATGGGCAGTAAAACGCAGAAATCCATCAAACTAAAGCAACACAGTTTCTGTAT

Function


NR:

description
PREDICTED: epithelial chloride channel protein-like

GO: NA

KEGG:

id description
K05030 CLCA3_4; calcium-activated chloride channel regulator 3/4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043258483.1 True 2824 mRNA 0.42 19 8720347 8727848

Neighbor


gene id symbol gene type direction distance location
LOC122359134 LOC107577085 coding upstream 3047 8701537 ~ 8717300 (+)
LOC122358599 clca4,LOC107749647,LOC107678236,LOC107749648,LOC107561373,LOC107678235,LOC107758746 coding upstream 23431 8680439 ~ 8696916 (+)
LOC122359139 LOC107749646,LOC107678243,LOC107560621,LOC107577085 coding upstream 64428 8651032 ~ 8655919 (+)
LOC122358973 LOC107577085 coding upstream 96981 8607954 ~ 8623366 (+)
LOC122358975 clca4,LOC107749647,LOC107678236,LOC107749648,LOC107561373,LOC107678235,LOC107758746 coding upstream 113140 8601100 ~ 8607207 (+)
LOC122358601 LOC107749646,LOC107678243,LOC107560621 coding downstream 18729 8746577 ~ 8747765 (+)
LOC122359480 zgc:162193,LOC107672386,LOC107758488,LOC107561378,LOC107749645,LOC107678257,LOC107560630 coding downstream 57375 8785223 ~ 8816926 (+)
LOC122359549 zgc:162193,LOC107672386,LOC107749645,LOC107758488,LOC107678257,LOC107560630,LOC107561378 coding downstream 103145 8830993 ~ 8839916 (+)
si:ch211-11n16.2 si:ch211-11n16.2,LOC107561380,LOC107678255,LOC107749652,LOC107672363,LOC108278225,LOC108442869,LOC105909327 coding downstream 180662 8908510 ~ 8917687 (+)
fbxo46 si:dkey-114g7.4,LOC107672409,LOC107758538,LOC107561382,LOC107749655,LOC107678246,LOC107560627 coding downstream 247189 8975037 ~ 8980892 (+)
G104504 NA non-coding upstream 62239 8608716 ~ 8658108 (+)
G104483 NA non-coding upstream 210541 8509581 ~ 8509806 (+)
LOC122358524 NA non-coding upstream 213623 8498434 ~ 8506724 (+)
G104480 NA non-coding upstream 224217 8495879 ~ 8496130 (+)
G104470 NA non-coding upstream 259994 8459901 ~ 8460353 (+)
G104524 NA non-coding downstream 134330 8862178 ~ 8880419 (+)
G104875 NA non-coding downstream 190139 8917987 ~ 8920164 (+)
G104925 NA non-coding downstream 502111 9229959 ~ 9230187 (+)
G104937 NA non-coding downstream 522099 9249947 ~ 9250408 (+)
G104973 NA non-coding downstream 663609 9391457 ~ 9391853 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other upstream 86376 8628860 ~ 8633971 (+)
G104466 cyp2y3 other upstream 302883 8401311 ~ 8417464 (+)
LOC122359395 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 761932 7957364 ~ 7958415 (+)
igsf10 LOC107750112,LOC107551235,LOC107720411,LOC107572519,LOC107680809,LOC107703022,LOC107720412 other upstream 957774 7752245 ~ 7762573 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122,LOC107662593,LOC107551237 other upstream 1095903 7621699 ~ 7624444 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other downstream 19955 8747803 ~ 8752818 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other downstream 28479 8756327 ~ 8761416 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other downstream 524660 9252508 ~ 9280469 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 788107 9515955 ~ 9523974 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other downstream 821904 9549752 ~ 9552128 (+)

Expression



Co-expression Network