LOC122358601 (LOC107749646,LOC107678243,LOC107560621)


Basic Information

Item Value
gene id LOC122358601
gene name LOC107749646,LOC107678243,LOC107560621
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8746577 ~ 8747765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258484.1
ATGGACTCAAGAACGGTGTTTGTCTTATGGATGTTGCTGTTGTCCACCTCTACTGGAATCAAACTGGATGGTAATGGTTACGTTGACATTGTCATTGCAATCAGTTCAAGGGTACCACAGGATCACACGCTTGTTGATAAAAtcaagGAGATGTTCACTGAAGGGTCGCTTTATCTTTATGAAGCATTAGATAAAAAGGTCTATTTCCGAGAAACTACAATCCTAGTCCCACCTCAGTGGAATAGTAAGGATTTTACCAAAGCAAGAACAgagtcttttgaaaaggccaaaataataattgataatcCTAATCCAGTATACGGTGATGAACCCTACACTAATCAATACGGGGAATGTGGAGCCGAGGGTCAATACATTCATTTAACCCCCAACTTCCTCCGAGACAAGACACTCATTAATATATATGGGGCAAAAGgAAGGGTCTTGGTGCATGAATGGGCTCATCTGAGATGGGGCGTTTATGATGAATACAGTGAAGAAAAGCCATTCCACTACTCTAATGGCAAAATTGAAGCAACAAGGTTATAA

Function

NR:

description
PREDICTED: epithelial chloride channel protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258484.1 True 549 mRNA 0.40 4 8746577 8747765

Neighbor

gene id symbol gene type direction distance location
LOC122358600 LOC107678237 coding upstream 18729 8720347 ~ 8727848 (+)
LOC122359134 LOC107577085 coding upstream 29277 8701537 ~ 8717300 (+)
LOC122358599 clca4,LOC107749647,LOC107678236,LOC107749648,LOC107561373,LOC107678235,LOC107758746 coding upstream 49661 8680439 ~ 8696916 (+)
LOC122359139 LOC107749646,LOC107678243,LOC107560621,LOC107577085 coding upstream 90658 8651032 ~ 8655919 (+)
LOC122358973 LOC107577085 coding upstream 123211 8607954 ~ 8623366 (+)
LOC122359480 zgc:162193,LOC107672386,LOC107758488,LOC107561378,LOC107749645,LOC107678257,LOC107560630 coding downstream 37458 8785223 ~ 8816926 (+)
LOC122359549 zgc:162193,LOC107672386,LOC107749645,LOC107758488,LOC107678257,LOC107560630,LOC107561378 coding downstream 83228 8830993 ~ 8839916 (+)
si:ch211-11n16.2 si:ch211-11n16.2,LOC107561380,LOC107678255,LOC107749652,LOC107672363,LOC108278225,LOC108442869,LOC105909327 coding downstream 160745 8908510 ~ 8917687 (+)
fbxo46 si:dkey-114g7.4,LOC107672409,LOC107758538,LOC107561382,LOC107749655,LOC107678246,LOC107560627 coding downstream 227272 8975037 ~ 8980892 (+)
sars2 sars2,LOC107672413,LOC107758861,LOC107395008 coding downstream 248127 8995892 ~ 9003262 (+)
G104504 NA non-coding upstream 88469 8608716 ~ 8658108 (+)
G104483 NA non-coding upstream 236771 8509581 ~ 8509806 (+)
LOC122358524 NA non-coding upstream 239853 8498434 ~ 8506724 (+)
G104480 NA non-coding upstream 250447 8495879 ~ 8496130 (+)
G104470 NA non-coding upstream 286224 8459901 ~ 8460353 (+)
G104524 NA non-coding downstream 114413 8862178 ~ 8880419 (+)
G104875 NA non-coding downstream 170222 8917987 ~ 8920164 (+)
G104925 NA non-coding downstream 482194 9229959 ~ 9230187 (+)
G104937 NA non-coding downstream 502182 9249947 ~ 9250408 (+)
G104973 NA non-coding downstream 643692 9391457 ~ 9391853 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other upstream 112606 8628860 ~ 8633971 (+)
G104466 cyp2y3 other upstream 329113 8401311 ~ 8417464 (+)
LOC122359395 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other upstream 788162 7957364 ~ 7958415 (+)
igsf10 LOC107750112,LOC107551235,LOC107720411,LOC107572519,LOC107680809,LOC107703022,LOC107720412 other upstream 984004 7752245 ~ 7762573 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122,LOC107662593,LOC107551237 other upstream 1122133 7621699 ~ 7624444 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other downstream 38 8747803 ~ 8752818 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other downstream 8562 8756327 ~ 8761416 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other downstream 504743 9252508 ~ 9280469 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 768190 9515955 ~ 9523974 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other downstream 801987 9549752 ~ 9552128 (+)

Expression


Co-expression Network