XLOC_006694 (si:dkey-275b16.2)


Basic Information

Item Value
gene id XLOC_006694
gene name si:dkey-275b16.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30655172 ~ 30662403 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012897
GCGTCGAGTTGAAGACTAAACGTTTCTTTCAGTCCTCCATGTCTGTATCCTGAACGAATGGATTCAATGGCTCAGCGTCCAGACCGTGATTCTCAGATATTTATAATAGGATGCGGCATCTCAGGAATCGGTGCTGCTCAGAAATTAATCAAACACGGTTTTCATAATGTACGCATTATAGAAGCAACTGCAAGAAGCGGTGGGAGAATACGAACGGGCAGACTGGgTGATAACATCATAGAGATCGGTGCCAACTGGATCCATGGCCCGTCGAAGGAAAACCCAGTGTTCCGTTTGGCATGTGACTATCAGCTCCTAGATAAAGAGTCGATGTCTGAAGAAAACCAGGCCATTGACATTGGGGGTCATCCTCTGTTTGTTCCCAACTGGTTTACCAGTTCAGGTCGGAAACTGGGGCCTGAGACTATGGGCCCAGCGCTTGAGTTTTTCATGACATTACTGGAAAGGAGCCAGCAGTTCCACAGCACCGGTGGAGAACCTCTGCCGAGTGTTGGAGAGTTCATCAAGGCAGAAGCTGAACGTCTGGCCCCAGAGGAGTGGAAGGAGGACAGAGATAACTTTGCAGTGAGGATGGCCATGATAAACACACTCCTCAAACTGGAGTGCTGTGTCAGCGGAACACACACCATGGATGATGTTGGTCTAGGAGCATTTGGCATGTATACAACTCTTCCAGGACTTGACTGCACTTTCCCAGGAGGTTATGAAGGTTTGACTGATCACATGATGAAGGAGCTTCCCCGAGACATAGTCTTATACAACAAGCCTGTAAAGTGCATTCACTGGAACTACACCAAGAATGGGCCCAACACTGGAGGAACGTCATTCCCAGTTACGATTGAATGTGTTAATGGAGAAACATTTGCAGCAGATCATGTTATTGTCACAGTTCCACTTGgatACATGAAGAAGCATCAGAACACTTTTCTGAGTCCTTCTTTTCCACTGCACAAACTACACTCCATTCAGAGAATGGGCTTTGGGACGAACAACAAGATCTTTGTTGAGTTTGAGCAGCCTTTCTGGGATGAAGACTGTGAACTTATTTACCTTGTATGGGAGGACGAGACCCATCTTACTGATGTTGTTTCTGATTTGAAGATGTCCTGGATTAGGAAGTTGACTGGGTTCACTGTGCTGAAGCCCACTGAAAGATTTGGACATGTGCTCTGTGGATGGATCGCAGGGCAGGAATCGGAGTACATGGAATCTCTGTCTGAACTAGAAGTGCTGCAGACTGTCACACAACTCCTTCGCATATTTACTgGAAATCCAACTATTATGCCAAGGAAGCTGTTACGATCTCAATGGTTCCATGAGCCCTATTCCTGTGGATCTTACTCCTACGTGGCCAAAGGTTGCTCAGGATATGACATCGATAACCTCGCTGAACCCTTGCCGTTGAAAGGCTCCAACTCAAAGCCTTTGCAGGTGTTATTTGCAGGAGAAGCTACACACAGGTCTTTCTTCTCTACGGTGCATGGAGCTTTACTCAGTGGCTGGAGAGAGGCAGAGCGTCTGATATCTCACCACACTTCTGCTTCTGGATCATTCTCATCTAAACTGTGAATGCTGTCCTCGTCTGGAAAGATTGCCCTTTTCATTGAAACTGAAAGGGTTTGTACCTTAAAATCGTCAGTAAAGGATTATCCGGATGTAATGAATGACTGCTTGGCAATTGTCCCAATGCCTTTGCAAAAATATAAGTGGGTATTTAAAAATTTCAGTAACGCTTTACACTGAAgttgcattagttaacatgaacaaacagtgcACGGCGATACAGCATATATTCAAATACAACAATGCTCATTTCATTGTTACTAATCATGGCCTAATCAAAAGTTGTAAATATACACAGGGCTTTTTCCTGGCTCAGAATAAAGCAGAGGGGTATCCTGATTGTGACATTTTTGCTACTTAAAACGAacacattttgcattattttaatattatcaagtaacattatcttattttaaaaagGCTAATGTTAAATGTAATGAAATACATGACCACTGCTTGAGCATCACTTGGGGACTGTTGGTAGCCATGACTTTCTGCctgatatattttatatagattaAAATGTTATCTATTTACAGTTGAGGTCAACATTATTAAACCCCTTGAATTATTATCGCCcctgttgatttatttttttcatcaagtttttgtttaatggagaaaagatttttttaacacatttctaaacataatagttctaataactcatttctaataactagtttctcttatctttgccatgatgacagtaaataatattttaataaatattttccaagacacttctatacagtacAAAGGGatattttaaggcttaactaggttaattaggttaactaggcaggatagggtaattaggcaagttattgtataatgatggtttgttctgtagactatcaaaaaatatatggcttaaaggggctaataattttgaccttaatgttttttttttttaataaaacaaataagactttctcctgtagaaaaaatatcagacatactgtgaaaattttcttgctcttaaaattcatttgggaaatatttaaaaaagaaagaagatttcaaagggcagctaataattctgatttcaactttatatattagttcatgttaacttttGCAACAAATGAGGCCTTATTTTTGTGTTACCAAATgctagttgttgtttctgtgatctgaaaataatttatatatattaaacatattttctcataata
>TCONS_00012899
GTACAGATTTGGACATGTGCTCTGTGGATGGATCGCAGGGCAGGAATCGGAGTACATGGAATCTCTGTCTGAACTAGAAGTGCTGCAGACTGTCACACAACTCCTTCGCATATTTACTgGAAATCCAACTATTATGCCAAGGAAGCTGTTACGATCTCAATGGTTCCATGAGCCCTATTCCTGTGGATCTTACTCCTACGTGGCCAAAGGTTGCTCAGGATATGACATCGATAACCTCGCTGAACCCTTGCCGTTGAAAGGCTCCAACTCAAAGGTTTTCAATTGCTTAGCCATTACACTTCTTATTTTATCAGCAACGCCAACCTGATtttaccaagtaggacatgttcctgcatTAATATCGATGTTGTTCCTGGAATAACAttacaatcagccaatcagaattaagggatgtgTTTACAATTTATGTTTAGGCTTACGGTtgggtttatgcacttctacagaATTGTTATCCAGCtaccctctgattttgggaataatttacagttatggttgggtttggtggtatggattgcatttttaaacaaatatggtGTTCTGGGATTAACAtcgatgttaatccaggattgcatcgTACTTGGTAAAATCATGATGTGCTTATGGGCAATAAACAGGAATTTTCATCATTAACTtccatttaattattaaatgatgATTCTTTCTTGTACAATACAGTAAATGGTACTTTGCGTTTGCAGCCTTTGCAGGTGTTATTTGCAGGAGAAGCTACACACAGGTCTTTCTTCTCTACGGTGCATG
>TCONS_00012898
CAGTTGTTCAGCGTTGATGGTCTCCCTTCATTTAAAAGTCTTTCACTTGTAATGTGtgtgcatatttactgtacataacttgtcagtgaactatgagggcaaaaaaattaataaatacaaaaataaaataatcgttcgtTAATCGTAAtccagttaaaatgttcaattaatcgtgattttgattttaggccaaatcgctcaGTCCTAGTTATGAtaacctttctttctttttattttttgcaggatACATGAAGAAGCATCAGAACACTTTTCTGAGTCCTTCTTTTCCACTGCACAAACTACACTCCATTCAGAGAATGGGCTTTGGGACGAACAACAAGATCTTTGTTGAGTTTGAGCAGCCTTTCTGGGATGAAGACTGTGAACTTATTTACCTTGTATGGGAGGACGAGACCCATCTTACTGATGTTGTTTCTGATTTGAAGATGTCCTGGATTAGGAAGTTGACTGGGTTCACTGTGCTGAAGCCCACTGAAAGATTTGGACATGTGCTCTGTGGATGGATCGCAGGGCAGGAATCGGAGTACATGGAATCTCTGTCTGAACTAGAAGTGCTGCAGACTGTCACACAACTCCTTCGCATATTTACTgGAAATCCAACTATTATGCCAAGGAAGCTGTTACGATCTCAATGGTTCCATGAGCCCTATTCCTGTGGATCTTACTCCTACGTGGCCAAAGGTTGCTCAGGATATGACATCGATAACCTCGCTGAACCCTTGCCGTTGAAAGGCTCCAACTCAAAGCCTTTGCAGGTGTTATTTGCAGGAGAAGCTACACACAGGTCTTTCTTCTCTACGGTGCATG

Function

symbol description
si:dkey-275b16.2 Predicted to enable polyamine oxidase activity. Orthologous to human PAOX (polyamine oxidase).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0046592 polyamine oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-204 Predicted to enable polyamine oxidase activity. Orthologous to human PAOX (polyamine oxidase).

Ensembl:

ensembl_id ENSDARG00000003380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012897 False 2762 mRNA 0.40 7 30655172 30662403
TCONS_00012899 False 780 lncRNA 0.40 2 30656430 30657492
TCONS_00012898 True 828 lncRNA 0.41 4 30656430 30659381

Neighbor

gene id symbol gene type direction distance location
XLOC_006692 zcchc24 coding downstream 9207 30579260 ~ 30645965 (-)
XLOC_006693 CT025887.1 coding downstream 22953 30632105 ~ 30632219 (-)
XLOC_006691 NA coding downstream 84029 30568567 ~ 30571143 (-)
XLOC_006690 NA coding downstream 103663 30549409 ~ 30551509 (-)
XLOC_006689 NA coding downstream 404608 30245673 ~ 30250564 (-)
XLOC_006695 rassf4a coding upstream 2416 30664819 ~ 30700460 (-)
XLOC_006696 CT025887.2 coding upstream 21783 30684186 ~ 30685913 (-)
XLOC_006697 tmem72 coding upstream 41958 30704361 ~ 30713236 (-)
XLOC_006698 NA coding upstream 146560 30808963 ~ 30812183 (-)
XLOC_006699 CR762493.2 coding upstream 192916 30855319 ~ 30872439 (-)
XLOC_006471 BX537274.2 misc downstream 20390267 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29828947 825904 ~ 826225 (-)
XLOC_006682 NA non-coding downstream 669670 29984877 ~ 29985502 (-)
XLOC_006703 BX005005.3 non-coding upstream 380111 31042514 ~ 31051156 (-)
XLOC_006704 BX005005.2 non-coding upstream 390133 31052536 ~ 31061816 (-)
XLOC_006705 BX005005.1 non-coding upstream 413430 31075833 ~ 31075947 (-)

Expression


Co-expression Network