LOC122358711


Basic Information

Item Value
gene id LOC122358711
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22824063 ~ 22834787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258552.1
AAAGCGAGCAGAAGACAGAAACGCGGAAGTGAAGTGGAGTTTTGACATATTTTCACCGGATGTCGTATTATTTATAGTTCGCATGTGTGACAGAGGTTCCCGGTTTTCAGAGTCGGGCTTTATCTTTAGTTTTCATGGCTCAGCAGTCCAACAAGAGGTTTGGGAATACTTACATCACTCTTAGGAAACACTAGTACAgagtctttgtttattttaaataggagATTGAGATCCAGAACCATCCAGAAGAAAAATTAAGATACTGAGGAACATACAGGTACAAACTCCAGGTGCATCAGCTGAAATCTGTGACGTATCGCGATAAAGATggagtttattaaagaggaggTCGATGACATGAGCTATCCAGAGCCACCCAGAATAACACGTGAAGATGCTGAGGAGCAAACAGATCTGGTGGATCTGAGGATCAGACAATGATCACGTCACGCCTACAGTGAAGCCCCTCCCACAACAATTCACCTATAAATACTGGAGAGTATTCACATCGTCCTACAAGAGAAGAACAAACTCCAGGAGCAGCGGCTGAAATCTGTTAAAGATggagtttattaaagaggagattGAAGACATGGGTTATCCAGAACCATCCAGAATAAAACAGGAAGATGCTGAGGAGCAAACAGaCTCTATTGAAGTAAAACGGCAAAGAAGGAATCTAAACGAAGATAAAAAGGAAGACCGCAGAATACAAAATTCAAGAAAACCAGGCAAACAGCTGCAGACCTGCTCACAGTGCGGAAAGAGCCTCAGAGACAAAGGAAACCTTAAGAAGCACATGagaatccacaccggagagaaaccgtactCGTGCCctcagtgcggaaagagcttTACAGCAGCATCGACTCTCAGTTATCATCTGCACGTTCACTCCGGAGAAAAGCCGTTCGGCTGCGATCGGTGCGATAAAAGGTTTATTTCATCGTCACAACTAAAAAAACACCTGACGGCTCACGAGAAGCCTCACGTGTGTCCTTACTGCGGGAAGAGTTTTTTACGCCTGGAGAGTTATAAGCAGCACCAGAAAATACATAATGGAGTGAAAGATCACGTGTGCTGCGAGTGCGGGATGAGCTTTACTGCGGCTGGTGATCTGACACGGCAccagaggatccacaccggagaaaGACCTTATAACTGCTCGTACTGCGACAAGAGCTTCACTCGCTCTGGAAGCCTGAAAAAGCACGAGCgcgttcacaccggagagaagctgTATCGCTGCgctcagtgcgggaagagctttaCTGCAGCTGGCCATCTGAAGCAGCAccagaggatccacaccggagaaaagCCTTACAAGTGCTCGTACTGCGACAGGAGCTTCACTCGCTCTGGAAGCCTGAAAAAGCACGAAAGacttcacaccggagagaagccgtatCGATGCGCTCAGTGCGGAGAGAGTTTCAAAGACGCGTCGAGTCTCAGGAATCACCTGCTCGTTCACTCCGGAGAAAAGCCGTTCGGCTGCGACCGGTGCGGGAAAAAGTTCATCTCGTCGTCGCACCTGAAAAGTCACCTGATAGTTCATTCGGACGAGAAGCCTCACGTGTGCTCTTACTGCGGAAAGAGCTTTTCGAGGCTGTATAGCTGTAAGCAGCACCAGAAAACGCACAACGAGACGATGCCacttaaattgtttttgtcCATGCTGCAGGGTCACGATGCGAAGACTAAATCCTCACGAGCTGCTATTAGTGCACATAAAGATGAAGTCCTGAAAGATTTTACTCCGTACCAGCTGATggagtttattaaagaggagattGAAGACATGGGTTATCCAGAACCATCCAGAATAAAACACGAAGATACTGAGGAACAAATAGaCCGGATTGTAGTACAGCAGCAAAGATTGAAGCCGAATGAAGTTAAAAAGGAAGACTGTCAAATGCAAAATTCAAGGAAACCAGCCAAACAGCTGCACACGTGCTCACAGTGCGGAAAGAGCTgcaagaaaaaaggaaaccttaaGAAGCACATGagaatccacaccggagagaaaccgtacaAATGCTCccagtgcggaaagagttttGCCGCAGAATCAAGTTTCAGCTACCATCTGCACGTTCACTCCGGAGAAAAGCCGTTCGGCTGCGATCGGTGCGATAAAAAGTTCATCTCTTCATCGCAGCTCAGAAAGCACCTGACGGTTCACGAGAGGCCTCACGTGTGCTCTTTCTGCGGGAAGACTTTTTCGCGCCTGGAGGGTTATAAGCGGCACCAGAAAAAACACAACGGAGTGAAGGAGCACGTGTGCTGcgagtgcgggaagagctttaATAAAGCTGTTGATCTGAAGCGGCACCAAATGATCCACACCGGGGAAAGACCGTACAAGTGCTCGTACTGCGACAAGAGCTTCACTCGGCCCGGAAGCCTGAAAACTCATCACCgcgttcacaccggagagaagccgtatCGATGCGCTCAGTGCGGAGAGAGCTTCAAAAACGCGTCGAGCCTCAGGAATCACCTGCTCGTTCACTCCGGAGAAAAGCCGTTCGGCTGCGACCAGTGCGGGAAAAAGTTCAAATCGTCGTCGCATCTAAAAATTCACCTGATAGTTCATTCGGACGAGAAGCCTCACGTGTGCTCTTACTGCGGAAAGAGCTTCGCGAGACTGTATAGCTGTAAGCAGCACCAGAAAACGCACAACGAGAAAAACGACATGGGGTTTATCAAAGAGGAGACTGAAGACGTGGGTTATCCGGAACCGTCCAGAATAAAACACGAAGATgctgaggaacaaacagacTGGATAGAGTTAAAACAGCATGAGGCGAACGAAGCGGAGGAacactttaaaatcaaaactcCTGGAAATAAAGGCAAACAGCTGCACACCTGCTCTCTGTGTGGAAAGAGCTTCTCGCACAAAGGAAACTTTAAGAAGCACACGAGAAtgcacaccggagagaaaccgtacaCGTGCCctcagtgcggaaagagcttcACCGCAGCATCGAGTCTCGGTTATCATCTGCACGTTCACTCCGGAGAAAAGCCGTTCGGCTGCGACCAGTGCGATAAAAGGTTCATCTCCTCGTCGTGTCTAAAGACTCACCTGAAAATACATTCAGGTGAGAGGCCTCATGCGTGTTCCTACTGCGGAAAGAGCTTTTCAAGACTGGACGATTGCAAACACCATCAGAAAACGCACAGCAAGGTGAAAGATCACGTGTGCTGcgagtgcgggaagagcttcaccaGAACCGTCGATCTGAAGCTGCATCAAAGAaatcacaccggagagaagccgtacaAGTGCTCGTACTGCGACAAGAGCTTCGCCGTGTCCGGCAGCCTGAGAACACACGAGCgcgttcacaccggagagaggcCGTACCGCTGCGCTCAGTGCGGGAAGACTTTCACCGTGTCCGGAAACCTGAGAGACCACGAGCGCGTCCACGTCGGAGAGAAGCCGCATCGCTGCGCCCGCTGCGGGAAGAGATTCACTCGGTCGAGATCTCTGAGGGCTCACGTTAAAATGCACTGCTCTGCGTCGGAGTGAGCGAATGGTTTTAACGCTTTCGACATGCAGAGGCGGTAAATGAGATGAGCTCAAATGATCGAGGAAAAACAAGTATTTAGTCGCTTTAATCTTGCTGTACGTCGAGGATTTTTATTCGTGCGGTCTGCTGACGACGAAACGCTCAAATTATGTAACCAAGCAGTTATTTGTCTGTATGTAATCAATTGCTTTTAATGAGTTTTAATAACTGAATAGTTATTAATGGAATAATATAAGCTGGgccctttttttttgcttatacaTAGAAATAAGCAACCATCCTATAAAACCATTCATATGCTAAAGAGTAACCATAAAAATGCTccatatttttaacaataaacgCACATTGAGAAATAA

Function

GO: NA

KEGG:

id description
K09191 GTF3A; general transcription factor IIIA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258552.1 True 3910 mRNA 0.48 9 22824063 22834787

Neighbor

gene id symbol gene type direction distance location
lrrc51 LOC107706076,LOC107558849,LOC107670099,LOC107669906 coding upstream 10793 22808780 ~ 22813270 (+)
naalad2 naalad2,LOC107560856,LOC107737433,LOC107670141,LOC107669901,LOC107731810 coding upstream 59101 22751534 ~ 22764962 (+)
tyr tyr,LOC107670098,LOC107669900 coding upstream 92867 22714506 ~ 22731196 (+)
actn4 actn4,LOC107669904,LOC107570110,LOC106612603 coding upstream 207310 22572491 ~ 22616753 (+)
zgc:85932 NA coding upstream 254272 22547353 ~ 22569791 (+)
LOC122359067 NA coding downstream 872 22835659 ~ 22837519 (+)
LOC122358712 NA coding downstream 4404 22839191 ~ 22852649 (+)
LOC122359069 NA coding downstream 10123 22844910 ~ 22847878 (+)
LOC122359065 NA coding downstream 18471 22853258 ~ 22856816 (+)
LOC122358713 NA coding downstream 21690 22856477 ~ 22857439 (+)
G108949 NA non-coding upstream 48490 22774778 ~ 22775573 (+)
G108906 LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104 non-coding upstream 157770 22660985 ~ 22666293 (+)
G108777 LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915 non-coding upstream 175718 22587935 ~ 22648345 (+)
LOC122358854 NA non-coding upstream 194951 22619676 ~ 22629112 (+)
G108762 NA non-coding upstream 290836 22532872 ~ 22533227 (+)
G108981 NA non-coding downstream 2898 22837685 ~ 22838122 (+)
G108986 gria4a non-coding downstream 34788 22869575 ~ 22988641 (+)
G109006 LOC104959606 non-coding downstream 163743 22998530 ~ 23006786 (+)
LOC122358995 NA non-coding downstream 206283 23041070 ~ 23066216 (+)
G109017 NA non-coding downstream 276769 23111556 ~ 23113058 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other upstream 46338 22775649 ~ 22777725 (+)
G108573 NA other upstream 1086376 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 1088345 21735014 ~ 21735718 (+)
G108571 NA other upstream 1090956 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 1097797 21724404 ~ 21726266 (+)
G108990 NA other downstream 114353 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 120924 22955711 ~ 22959679 (+)
G109132 NA other downstream 411988 23246775 ~ 23271291 (+)
G109193 NA other downstream 674645 23509432 ~ 23510315 (+)

Expression


Co-expression Network