capns1b (capns1,capns1b,LOC107669758,LOC107587742,LOC107682413)


Basic Information

Item Value
gene id capns1b
gene name capns1,capns1b,LOC107669758,LOC107587742,LOC107682413
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15889354 ~ 15893250 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258631.1
CAAATTGACGCGTTGACGCAAAACCTCCGCAGTGTTGTTCGTGAACTTGGCGGACTGGTTTTAGGACCCGGAGTTTGACAAATCAGTGAACTGGGTGTGTAGAGTTTTCCATCCAGAACAGAATCGCCTTTGGGAGAAGCTGCGTTTACTTTTGCCTGTTTAACGTTACCTGAGCGGCGGGGCTTTTCTGGTTTTCTTCCTCTGCACCTTTCTGCTAGACCTTCCGTGCTCAAGATGTTTTTGGCCGACCGAGCTCTTAAAGGGCTCATAAATGTTGTCAGCAACATTGACCAGTTTCTTCCTTCAGATCCTCCTCCTCCCAGAAGACCACTCGCATACGCCAACCAGAATGAAACCGATGAAGAAAGGAAGTTTCGTAAAGTGTTTCAGCAGCTTGCGGGCGACGACATGGAAGTGAGCCCCAATGAACTGATGGGCATCCTTAACAAGATTATTGCCAAACATGGCGATCTGAGAACAGATGGTTTCACTATTGAGTCCTGCAGAAGCATGGTGGCAGTAATGGATAGTGACAGTACTGGAAAACTGGGATTTGAAGAGTTCAAGTATCTTTGGAATAACATCAAGAAGTGGCAGggcatttacaAGAATTTTGATGCTGATCGCTCTGGTTTGATTGGGTCTGATGAGTTACCAGGAGCTTTTAAAGCAGCAGGGTTCCCACTCAATGACCAGCTTTTCCAATTGATCGTTAGGCGTTACAGCGATGAAAAGGGCAACATGGACTTTGACAATTACATTGGATGTCTTGTGCGCCTGGATGCTATGTGTCgtGCCTTCAAGACACTTGATAAAGACAACAATGGCACCATTAAAGTCGACATTCAAGAGTGGTTGCAGCTGACGATGTACTCTTGAATATGAAAGAATATACCTCGCCATCTTGATTATGTTCTTTTGTCCGTTCATCTTTGTTGCCTGTCATTGTCAaaagtcttttgttttttaataactgacataattatttgtttcattgttcTCTGTGACAGCATGATCATACTGTGCTTTTACACTAGGTGGCAGCTTTGTTGCCACTCATCCTTGTTACATCCTTAGAGGTTCAGTTTATGTCGTATTTCCATGTTTTATTCCATGCTATTGCGcccttttaattttattctatggatttataattttacaaagagCCTTCAACCAAAGTTTAAAAGCCACGTTCAGAATAGTATAGTTTTAGAATACATAACAGCTATTAAGTACATGCTAGAGCTACACTATTTAATCACTGAGAATGAGTCGGCTGTCCGTTTTGCCAAAGTATTGTGCTGATGCTTAAATAAACGTTATTTGTGTTGGA

Function

symbol description
capns1b Predicted to enable calcium ion binding activity. Is expressed in several structures, including digestive system; epidermis; nervous system; pectoral fin; and periderm. Orthologous to several human genes including CAPNS1 (calpain small subunit 1).
capns1 Enables calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in positive regulation of cell population proliferation. Located in cytosol and membrane.

NR:

description
PREDICTED: calpain small subunit 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258631.1 True 1333 mRNA 0.42 11 15889354 15893250

Neighbor

gene id symbol gene type direction distance location
si:ch211-137a8.4 si:ch211-137a8.4,LOC107669730,LOC107714190,LOC107548596,LOC107756666,LOC107682371,LOC107589723 coding upstream 11499 15872081 ~ 15877855 (+)
si:ch211-137a8.2 LOC107714189,LOC107669729,LOC107548595 coding upstream 23944 15845574 ~ 15865410 (+)
clip3 clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746 coding upstream 51446 15826161 ~ 15837908 (+)
gipr gipr,LOC107548593,LOC107714193,LOC107685094,LOC107756746 coding upstream 70208 15800729 ~ 15819146 (+)
LOC122358489 LOC107756729,LOC107589721,LOC107685095 coding upstream 227699 15658988 ~ 15661655 (+)
zgc:101731 zgc:101731,LOC107587749,LOC107669759,LOC107757427,LOC107714187,LOC107683430,LOC108425805 coding downstream 147 15893397 ~ 15900634 (+)
zgc:113149 LOC107669760,LOC107714186,LOC107587722,LOC107756630 coding downstream 8044 15901294 ~ 15906396 (+)
rap1gap2a rap1gap2,rap1gap2a,LOC107666198 coding downstream 17236 15910486 ~ 15969203 (+)
gucy2f gucy2f,LOC107714181,LOC107666202,LOC107589733,LOC107682463,LOC106613073 coding downstream 92829 15986079 ~ 15995992 (+)
nrip1a LOC107714172,LOC107587564,LOC107666194,LOC107682571,LOC107756533,LOC107589737 coding downstream 217258 16110508 ~ 16120566 (+)
G106941 NA non-coding upstream 251325 15637174 ~ 15638029 (+)
G106924 NA non-coding upstream 318192 15502558 ~ 15571162 (+)
G106926 NA non-coding upstream 378244 15510317 ~ 15511110 (+)
G106898 NA non-coding upstream 406682 15397722 ~ 15482672 (+)
G106873 sarm1,LOC107548548,LOC107669752,LOC107743642,LOC107685076,LOC107756984 non-coding upstream 598191 15290829 ~ 15291163 (+)
G107113 NA non-coding downstream 883 15894133 ~ 15894624 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding downstream 106965 16000215 ~ 16002131 (+)
G107141 NA non-coding downstream 176234 16069484 ~ 16069741 (+)
G107145 NA non-coding downstream 246563 16139813 ~ 16167005 (+)
LOC122358549 NA non-coding downstream 443564 16336814 ~ 16357622 (+)
G107107 NA other upstream 5844 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 176915 15706513 ~ 15712439 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 961129 14912911 ~ 14928225 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 1927547 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 1972092 13916573 ~ 13917262 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 111619 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 196507 16089757 ~ 16236341 (+)
lyrm9 lyrm9,LOC107756492 other downstream 620058 16513308 ~ 16514221 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1896595 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 1938822 17832072 ~ 18116953 (+)

Expression


Co-expression Network