ngef (ngef,LOC107585734,LOC107745214)


Basic Information

Item Value
gene id ngef
gene name ngef,LOC107585734,LOC107745214
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21226152 ~ 21251420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258636.1
GGGCCAAAGGACAGGTTTGCTAGACCGGAGAGgactcagagagagaaagacagatttTAGACTTCTGAACTAGTCAGAAACAACACGCCTGCCCCTCAGgcagaggaaaaagaaagaggCGAAAGAAGAATGAGAGAGTTGATTATCTAGAAAGGGTGCATAGCTTCTCTGTGACTGTGGTAGGATTGTGTGTTTGGGAGCTCGAACTTTTGGATTCGCTCTGGATGGGAATTCCTGCTGCGCTTGTCAGATGGGGATTATTCCATGAACGGCTGGATCTCGTTACTGATAGCTGATGGCGATGACAGCCCTGTTCCGAATGAAGTGGGGACATAAACATCAAGTGGTCCAGACCAAACCTCAGACGCCGGCGCCCCAGCTGCCCAGCGAGgatgacgacgacgacgacgacgagaCGTTGTCCGGGAGACCCCCGATACGCAGGAATTCGCGGTTTTACCGTTCAATGCGAAAGAAAAAGCTGTCTTCGTCTTCAGAGCAGCAAGAAAGCCCCACCTCCTCTCCTAAAATGGCAGTAGACCCCGCCTCCTACAATAGGCTCAGCCCATCTGCAGCGAATCGGCTTTCACCCTCTCCCAGAATGCCTCATCCACCTTCTCGTTCTGGAATCTCGTTGCCGGGCAACGGGATTACTGTGCTGGGAGGAGTTCGCTCTCGGTCTCCGTTGGCGACGCCGGGAGGTTGGTCGCGTAGACAAGAAATGGAAGAGCTGAGTGAACGGACGACAAGTGCTTGCACTATGCAGGACAATGACATTCACACCACGGCCGACCCGGACAACATCACACTCCGGCTGGTGAGGAATGGTGACAGTCCGCAGAAGATGGCAGTGGAGAATTCCTGCCGCAATCTCAACATTGTGAAGAGTGTCGATGTGTTGTATCAAGAGTACCGTGACACCTCGAAGCAGCAGGAGATCGAGCAGCGTCGACAGAGAGATGGCCTTCCGACCGCGGGGTCAGGGGTCACGGCTGCGCCTGCGTTACAGCTGCAGCTGAGGAACAGCACGCATTCACTGAGCCTCTGGCAAAACCTGGAGGCCGTGAAAGACAGCGGATATCTGAAGGCGCTAGAGCCAAAGGAGATCATACTGCAGGAGGCCATGTTTGAACTGGTGACCTCTGAGGCGTCGTACTATAAAAGCCTGGAGCTGCTGGAGACCCATTTTCTGCGAAACTCTCAGCTTGTCAACATTTTGAGTCAGTCTGACATGCACTTCTTGTTCTCCAACATTGAGGACATCATGAAGGCAAGCGagagATTCCTCATGGATCTGGAGCACAGGATCGAAGAGTCCATCCTGATCTCAGATGTGTGCGATATTGTTCACTTTCACGCCGTTAAACACTTCCAAGTCTTCATAAGCTACGTCATCAACCAGGCATACCAGGAGAAGAACTACCGACGGATACTACAAGAAAATGCTCTTTTTCGAGAGAACATGTCCATTTTGGAGAATCAGCCGAAAGTGAAGGGCCTCTCGTTTACTTCCTTCCTCATCCTCCCTTTCCAGCGAATCACACGGCTCAAGCTACTTGTTCAAAATATTCTGAAGAAGGTGGAGGAGaattcagagagagaaaagaccGCAATATTGGCTCACCAAGAGTTGGAAAGGATTGTGAAGGAGTGCAACGAAGGAGTGAGGAAGATGAGCCGTACCGAGGAGCTGATCAGCATCGAGAAAACACTGGAGTTCAAGTCGAAGTCGGTGCCAGTGATCTCTCACTCTCGCTGGCTCCTGAAGAAGGGAGAGGTGCAGCAGATGTCCGGGCCCAAGAGCACCAGGACCATGCGGAGCCGCAAACTCTACCACCCCATATATCTGTTCCTGTTCAATAACCTGCTGCTCATCACCAAACGCAGCTCCAGCGGAGAGAAGTACCAGGTTCTGGACTCTTGCAGCCGCTCCATGCTGAGGACTGAAGACCTGGAGGATCAGGGTCAGATGCTGGCCTGTGCGTTTGTGCTGAAGCTGCTGGAGAACCAGGAGGACCGAGAAGTCAGCTACATGCTCAAGACCGAAAGCATAAGCGATAAACTGCGCTGGATATACGCTTTGACTCCAAACCGGCGTACGAGATTCCTCTCGACCAGCACCCATCAGCCAGATTCCCCGCAGGTTCAGTGCATCCAGTCGTACTCTTCTCAGGAACCTGACGAGTTCTCTGTAGAAATGGCTGATGTGCTGCACATTCTGGAGTGCACCGATGATGGCTGGATGTTGGGTGAAAGGTTGCACGACGGCGAGCGAGGCTGGTTCCCGACCCGCGTGGTGGAGAGGATCATGAACGCAGAAGTTCGGGCTCAGAACCTCAAAGAGTGTCAGCGGATCCAGCAGGCTCAGGAAGGAGCGCAGGGGGCCCGGGCCGCCTCCAGGGGCCGCCGCCCGGCCAAAAGCCCCCAATACACTCCCACCTGGACTGACCTGTAGATAAGGAGCGAGAAATAACATCGCGTAACCACcaccgccgccgccgccgccgttCGTTCTTCTAATTCTTGACCCGGTAACCTGGAAACAGCGCCCCCTAGATGTCGCGGCGGACATGTAGTCATTCTGTGTCCAGTGTTTTATTGAATACGTCTCCGGCGTCCCACCGAGGACTCGACAGGGTCGTGGAAGAGCTCTTGCACTACAAGCACTTGTGTTTTTGAATCGCTGCTTCCATACAGTCCTAACACGCTGTTAGCATGAAGGATTTCAACCTCCGCAATCACAACACGGGACCACTTTTCTGACGCACACGAGGTGAAGGACTTTTTTACGTCAGGACTTTTGTGAAGTCGTAACGCTTCTTTGGAAAAGGAATGTATTAATGTGCATGGTCACACCTTACTGACATTACAGGTTTGCGTTTTTAAACTAACCTCTGAGGACAAAGGGGATGTACTGTACCGTACCGAGCTCGTTCTCCTCCCATCCACTTGAAGAACAAAATGAGaataagagagaaaatgaaCTAAGATAATCGAATGCACATGTACGGCGTTTTGAatgcgtctttttttttttgggggattaaaaatgcagatgaagAACACCGAGGCGTTTTTTGCACGTGCTGCATGAAAGTGTGTGTACGATCACACATTAAACAATGTTttcctacacaaacacactacaCACAGGAAAGTAATGTTGTTAAACCAGTCTAACAACCGTGTCCTAACCAGATGCAACAAGCTATTTGTTAGACATAAaggtgtgtatgtatatatatatatatagagagagagagagagagagagatagagagagagagagagagagagagagattatgaTTTAAGAAGCACAATTTACTATACTGATGTTGTCCGAGttttttgaagtctttttaattttttttctctttaatccACAGTTATGTAAAACGTGCAAATATAGCGAAATATGATACCCTAAAATGTTTCCCCTCATCTTGTTCCGAACTTAACCAGATTTTCTCTTGTGAACCACAGGAgcagattttagttttttttgtttccatagTCAAAAACATCCATTTTACGAAGAATAGATGCTTTTCTTATTTCGTCAGCGGCATCTGGTTTGGACACGGACACTTCTTTTCTAAGAGAGAATGTAACTTTCATGAAAGTAGGTGTTTTTATAGTCGTGTGCATGTTCATATGAAGACCTCTCACGTTCAAAGATGTGGTAAAGAGTTGTTGCCAAATAATTGTCccatttcattttgtaaaaagatAATTTATTGTTGATGAAAATAAATCTTGAATGTTGAGACCTTGACATCACCTCATCTAATAAATGACAAACCCCTGCTTTCTGTAA

Function

symbol description
ngef Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Orthologous to human NGEF (neuronal guanine nucleotide exchange factor).

NR:

description
PREDICTED: ephexin-1

GO: NA

KEGG:

id description
K07525 NGEF, EPHEXIN, ARHGEF27; neuronal guanine nucleotide exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258636.1 True 3819 mRNA 0.49 15 21226152 21251420

Neighbor

gene id symbol gene type direction distance location
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding upstream 16047 21202849 ~ 21210105 (+)
cab39 cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174 coding upstream 24934 21193051 ~ 21201218 (+)
robo2 robo2,LOC107741616,LOC107745189 coding upstream 398237 20461144 ~ 20827915 (+)
LOC122358393 sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521 coding upstream 778066 20439195 ~ 20448086 (+)
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding upstream 787326 20405710 ~ 20438826 (+)
trnai-aau_69 NA coding downstream 1322 21252742 ~ 21252815 (+)
trnaw-cca_2 NA coding downstream 2057 21253477 ~ 21253548 (+)
trnag-ucc_4 NA coding downstream 3514 21254934 ~ 21255005 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding downstream 3763 21255183 ~ 21263444 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding downstream 33967 21285387 ~ 21295902 (+)
G108427 NA non-coding upstream 23643 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 35779 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 376237 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 387574 20833494 ~ 20838578 (+)
LOC122359467 NA non-coding upstream 873768 20351597 ~ 20352384 (+)
G108553 NA non-coding downstream 365236 21616656 ~ 21617193 (+)
G108555 NA non-coding downstream 379909 21631329 ~ 21908852 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding downstream 382781 21634201 ~ 21911355 (+)
G108561 NA non-coding downstream 391163 21642583 ~ 21920410 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding downstream 475640 21727060 ~ 21727570 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 11659 21211810 ~ 21214493 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 971881 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 976180 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 1010673 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1451767 19721284 ~ 19774385 (+)
LOC122358705 NA other downstream 472984 21724404 ~ 21726266 (+)
G108571 NA other downstream 480561 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 483594 21735014 ~ 21735718 (+)
G108573 NA other downstream 485260 21736680 ~ 21737687 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 1524229 22775649 ~ 22777725 (+)

Expression


Co-expression Network