tiam1b (tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792)


Basic Information

Item Value
gene id tiam1b
gene name tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22220210 ~ 22274827 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258691.1
ATCTGAACTGCGCTGTCTGTatttcgGACGTCACCCGGCATGGTGGTAGGCGCTGATCTGTATGCAGAGTGAAATCTATCATGACTGTGATGTCATCGGCACACCGCAGATACTGAGCCATGGGTAACACAGAAAGTCATAGCGGTGGCCATGGTTACTATGGAGATGGTCAGCGCCACCTCTCCCGTAAGCATATGTCCCGTTCGCTCCGCCTGTCCAGCAAGCAGACGTACTGTTCCCGCCGAACGGCGTCCGGAAAACCGGAGCACCGCAACTCCGAGACCAGCACCCGCTCCAGCAGCACTCCCAGCATCCCACAGTCGCTGGCCGACCACGGCCTGGAGCCCTTCAACGACTCCGACATGCTGCCCGACTTCAGCGGCCCTATTTGGGTGGACCGCGTGGCCATGAATCTCCGGCCCATGTCCTTCCACAATCACCCGGCTCATTCGCCCGCCGCCAAACAAGCCGTGCAGGACGCCGCCGAGCCGCCGGAGGACGCCCTCGTCCAACGCACGCGAGACTCCCAAGACGCCTCCAGCTTTAAAAAGAAGCGCTCTAAGTCTGCGGACATGTGGAGGGAGGACTCGCTGGAGGTGTCCTTATCCGACCTGAGCCAGGAGCACCTGACCAGCACGGAGGAGATCGGAGACACCCCGGACGACTGCGAACCCTGCTTGCAGTCGTCCGCTCAGGACCGAGCCAATTCTTTAGACGAGCTCTACGGGCCGAAGAGCCCCGCTTGCAGGCCCACACACGGACGCTACGCCAAATGGCACAAGGGAGGCGGGACAAGCAGAGAAGGTGATGAGGATAAGATGATCTCACCCTGTGAGGACGACGGGGCCGCGTACGGCGCCTACACACTGCCCTGCCGTCGATCTCACTGTCTGTCAGAGGGACCGACCAATCATCAAGGAGTTATGCAAGGGAGGCGGGCACAAACCATACAAGATGTCACAGCAGGAGACGGCAGCGATTACGAGGACAGTGGTATCGATGGGCTGACGGGGGACAGCGAGGCGTCTCAGCACCACGCTCGTCGCTATAAGACCATGTCTGCGTCTTTCTCGGCTTACTCCACGTCAGCAGGGGGCGCCTTCGCCGGGAGCGACAGTGGGAGCAGCAGCGGGGCTGGAGCGGGACCCTCAGAGGGCACACAGggaGTCTACGAGAACTTCCGCCAGGAGCTGGAGCAGAACGTGAGCCCGGCGGAGGTTCCCGAGGAGAGAAGCTCGGCGTTCAGCGACGAGCAGAGCAGCGTGACCCTGAGCTCAGCGTATCACACCGACCCTCTGCTGAACGTGGCCGCCGTACAGGGAACCGTGCGCAAAGCTGGGCGCCTCGCCGTCAAAAACTTCCtggtgcataaaaaaaacaagaaggtGGAGCTCGCCCCTCGCCGCAAGTGGAAGAGCTACTGGGTGTCCctcaaagGGTGCACGCTGTTTTTCTACGAGACGGACGGCCGGTCGGGCATCGATCACAACAGCGTCCCTAAACACGCCGTGTGGGCCGAGAACAGCATCGTCCAGGCCGTCCCAGAACACCCCAAAAAAGATTTCGTCTTCTGCCTGAGTAACTCGCTCGGAGACTCCTTCCTTTTTCAGACCTGCAGCCAAACGGAGCTTGAGAACTGGATCACGGCCATCCACTCGGCCTGCGCCGCCGCCGTCGCTCGACAACACCACCGCGAAGACACGGTGCGCCTGCTGCGGGCCGAGATCAGAAAGCTGGAGCAGAAGATCGACATGGATGAGAAGATGAAGAAAATGGGAGACATGCAGCTCTCCGCCGTCACTGACGCCAAGAAGAGGAAGACCATTCTGGAGCAGATTTTCCTGTGGGAGCAGAATTTAGAGCAGTTCCACATGGATCTGTTCCGCTTCCGCTGTTACCTGTCCAGCCTGCAGGGCGGCGAGCTTCCCAACCCCAAACGCCTGCTGGCCTTCGCCTCTCGTCCCACCAAACTGGCTATGGGCCGCCTAGGCATTTTTTCGGTCTCGTCCTTCCATGCACTGGTGGCGGCTCGCACTGAGAGCGGCGTGAGGCGTCGGACACAGGCGATGTCACGCTCCACCAGCAAACGCAAGAGTCGCTTCTCCTCACTATGGGGTCTGGACACCCACTCCAAGAGAAAGAGTAAAGGTCATCCCAGCATTAACCAggtttttGCAGAAGGGGATGATCCAGTCAAAAGTCCTCTAGAAGGCATGTTTGAGGGTTCTTCTAGTGAGACGACGAAAGACACCAAGACCCCAGTCAAAGGTCTGCCAAGACCCAGCACGGATCATGACATCTGGTCCCGAGACCACCTCACTCCATCATGGGTGCTGCTGCCAAACGACCAGCCTGTGTTAGCCATCATCCAACCCGGAGAGTCGGCCCTCGACATGCTGGAAACCATCTGCAAGGCTCACCAACTGGACCCCACTAAACACTACGTGCGGCTTAAGTTCCTCATTGAGAACCAAGTGCAGTTTTATATCCCCAAACCGGAGGAGGATATTTATGATCTGCTGTATAAGGAAATCGAGCTGTGCTGTAAGATCAGGAAGGTCATCCAGTTTGATCGGGATGAGTCCTGCATGATCGGCTACGgTTTTTCCATTTCAGTGGTGGAGGAGGACAGCGTTCAGCAGCTCTATATCACTGACGTGAGAGCTGGAGGATTAGCGTTCGCTAAAGGTCTGAATGCGGGAGATGAGATTCTGCAGCTGAACGGGAAGGACGCCCGCACTCTGACCTTCGCTGACATGAAGGTGGCGTTCGCccaggtctctctctctctcaccgtcAACACGCTGCCCCCTGTCGACCGCCGGCAGCTCTGCTTCCTGCCACCGAGACGCTCGGACGCTGTAGACAACCTCTACACAGACATCTTCTCTCAGAGTCAGGAGGAGATTCTGGACGACGGAGTGGGTCTGATCGTGGAGACTTCAGGAGACAGTTTAGACGACGACTCGGAGCTCTTCGCTGAGTTTGATGACTATGGAAAGagtACGGAGCAGGTCGCAGCTTTCTGCCGCAGTCTGCACGAGATGAATCCCTCATCTGAGATCGTCTCTTCCTCGTCCGGCCCGGAGTCTTCCTCGCTTCCTCCGAGCAACGCCACTCCACGACAGCTCTCCGATGCCGACAAACTCCGCAAAGTCATCTGCGAACTGGTGGAGACAGAGCGCACCTACGTCAAAGATCTGAACTGTTTGATCGGGCGATATTTAACCCCGCTGCAGAAGGAGTCTTTCCTCACTCAGGATGAGCTGGACGTGCTGTTCGGAAACCTCCCGGAGATGCTGGAGTTTCAGGTGGAGTTTCTGAAGACCCTGGAAGACGGGACCCGACTGGTTCCTGACCTGGAGAAACTGGAGCGAGTGGAAGAGTTCAAGAAAATCCTCTTTTCTCTGGGCGGCTCGTTCCTGTATTACGCCGACCGCTTCAAGATCTACAGCGCTTTCTGTGCCAGCCACACCAAAGTGCCCAAAGTGCTGGTCAAAGCAAAAACAGATACGGCCTTCAAGGCGTTTCTGGACGAGCGCAACCCCAAACAGCAGCATTCGTCCACGCTGGAGTCGTACCTGATCAAACCCATCCAGAGAGTGCTGAAATACCCTCTTCTCCTGAGAGAACTACACTCGCTCACAGACCCCGACAGCGAGGAGCACTACCATCTGAACGTTGCAATGAAAGCCATGAACACAGTTGCCAGTCACATCAATGAGATGCAAAAGATCCACGAGGAGTTTGGAGCCGTCTTTGACCTCCTCATCTCTGAACAGACCGGAGACAAGAAAGAGGTTGCTGACTTGTCTATGGGAGATTTACTCCTCCACACCAGCGTGACATGGATCAACCCGTCCTCCTCACTGGGAAAGTGCAAGAAAGAGCCACAGCTGGCCACATTCGTGTTCAAAATGGCTGTAGTGTTCATTTGTAAGGATTACTccaaacagaagaagaaaatggGTGGTTCTCACAGAGCGTCAATCTCAGGTGAAGAGAAAGATCCGTTCCGTTTCCGTCACATGATCCCCACGGACGCACTTCAGGTGCGCACACTGTCCAGTACAGATGGAGAGAGCGCAGCGGTGTGTGAGATCATCCACGTGAAGTCTGAATCAGAAGGAAGACCAGAGAGAGTGTTTCAGCTCTGCTGCAGCTCTCCTGAGAGTAAGAAAGACTTCTTGAAGACGGTTCACTCCATCTTGAGAGATAAACAGCGCCGTCAGCTGCTGAAGACCGAAAGCCTTCCTCTCAGTCAGCAGTATGTTCCCTTCGGAGGAAAACGCTTGTGTGCCCTTAAAGGAGCCAGGCCGGCCATGAACAGAGCAGTCTCCGCTCCGACACGCACGCTGGGCCGCAGGAAACTGGTGCGGAACCGCTTCACCATCGACACGGACATCGTTTTCGACACCGAGCCCGACAGCGACTCGCCGGACTCCCAGCACGCTCAGCAGCAGGGCATCGTCCCGGCGGGCGACACCGACCGCTGGGTGGAGGAGCAGTTCGACCTCCAGCGCTACGAGGAGCAGGAACAGGACGTGAAGGAAACGGACATCCTGAGCGACGACGACGAGTTCTGCCAGTCCGCTCTGAGCCCGTCCACCGACCCGGACCTGGAGGGACCGCTTTCCGCCCTCTCGCTGGAGGGAGACACGGccgaggaggaagaggaggaggaagaggacgcCAAGAGGGACTGCAAATCCCAGCATGCCAAGCTGTCTCATTTAGGGAAGCAGTGCGCCATGTCGGTGGCCAGTGTGGACGAGCAGGTGTCCGGTGAAGACATCTGGGTGCGGCGGGACAGCAGCACGGACAACGAGACACAGGACGATACCCAGAGCTGAAACGCATCAGGAGACGGACTCCGTTAAAGAAATAATTCGCTCCGAAATTCTAATTTGCCGAACGCTTAATCGCCCGCAAGTTTGTTTTCCCGCATCAGATCAGGCGAAACGTAGCATTACAtcagtgtctcagcaatggatgctctgcggtgaatgggtgccgtcagaataagagtctgATAACATGTCTTTCTGTACTGAAAGCTGAATCTGAAAACTTTAATTCAGGAGAGAAGTCTCGCAAATCAAGCATCGTTTACAAGCCAAACAGTCAAGCTCtgataaacagattttaatgtgAGAGAGACATCATTATggattatatttacatttattcatttatcagacacttttatccaaagcaactggGGGATACATCAAGCGATTAATCCTATCATCAAGTTTGAAggaaaatgttgaattttttcTGTTAATGGCCCGTCCGTTAATATTTCAGCCAGAGATCTAAAAGAGACTTTTCGgactcgttctgacggcacccattcactgctgagaaAGTACTGCTACGTTcatccagatctgatgaagaatcAAACCCGTCTGCATCTCAGATGACCTGAAGACGATtacagcaaattttcatttttgggtgaactattgctcgCCAGTCAAACACATCAGCCGATGCATGACGACAGTCTCTCCATGCTAATACTCCGAATGTTAGACATTCCTTTCCAAGTAGCTGTAAGATACGACGCTTTAAACACATTAGATGAGCTCTACGTGTGCGCTGTGGCCAATCAGAAACCGCAGGAAACGTGGTGGTACAATCAATAGAATTAGAATTGCACATTCAGACCTTTCCGTTTCGTTCTTGACGTCGTTAATTCCAAAATAAGGGCtgggatttatttattatgtccTTCGGATGTAAGAAGAACGACAGCCTGGTTAAATATCTCGCTTTTTCGTTATTTTTCTTCAGCATTGGCTCATACTTGTACAGAGAAGCTGCCTTTTCTTCTTTGAgttgtaaatatttgtgtttatttctttgcGATTTATCCGAAGTGTACATACCGACGCTATTCTGACCTGAAATCTACATGCAATTTCAATATTCACGTAGTAGTTGTGTTGAATATCGATTTAGATGCGTACATCTCAGGTCAGAATAATGCAGAATTAAtttttacgatttttttttttttatatagctcATTCTGCGTAGGTCAACTATGTCCTGTTTTACTTGAATTTTGTTGATAAATGCAATATGATTTTTAGCTGATGGACTGTTCTGTTCCtgttttaaatggtttgttGTGGTTCAGCTCTACACGAACGACACATAATGAACCGCGATTTAAACACGAGCCCTTACGCAGacgaaaatgtatttttttttcatttatcttctttttttttttttatctcgcGTTTAAACTTCGGTTTCACGTTTTTTAAATTCCAAAATTTGCTGAATGCAATCAAGAGAAGCCACtggaaaatattttagatgatATTGCTTTCTAATTGAAAACGTTCCCATTGAGCTATAGagactgcatttttattttgtatatagaGCTGTGGATTgatattatatcaaataaattggTTTCGTACATATCAAAAA

Function

symbol description
tiam1b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity; positive regulation of axonogenesis; and small GTPase mediated signal transduction. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in cytosol; plasma membrane; and synapse. Orthologous to human TIAM1 (TIAM Rac1 associated GEF 1).

NR:

description
PREDICTED: T-lymphoma invasion and metastasis-inducing protein 1 isoform X1

GO: NA

KEGG:

id description
K05731 TIAM1; T-lymphoma invasion and metastasis-inducing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258691.1 True 6456 mRNA 0.52 29 22220210 22274827

Neighbor

gene id symbol gene type direction distance location
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding upstream 15109 22183548 ~ 22205101 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding upstream 45668 22167114 ~ 22174542 (+)
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding upstream 154616 22051590 ~ 22065594 (+)
clstn2b si:ch211-276c2.2,LOC107698872,LOC107669856,LOC107739921,LOC107585786 coding upstream 205903 21842663 ~ 22014307 (+)
LOC122358818 si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474 coding upstream 386994 21791606 ~ 21833216 (+)
LOC122358842 NA coding downstream 3161 22277988 ~ 22279228 (+)
LOC122358834 zgc:110333,LOC107722269,LOC107670094,LOC107585751,LOC107669883,LOC107705634,LOC107558842 coding downstream 7853 22282680 ~ 22284032 (+)
cldn8.1 cldn8,LOC107722270,LOC107670101,LOC107705635,LOC107669885,LOC107578419 coding downstream 11963 22286790 ~ 22288670 (+)
LOC122358830 LOC107722268,LOC107585749,LOC107670104 coding downstream 15103 22289930 ~ 22293389 (+)
grik1b grik1b,LOC107670116,LOC107669874 coding downstream 20489 22295316 ~ 22325707 (+)
G108713 NA non-coding upstream 41580 22177392 ~ 22178630 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding upstream 183372 22028437 ~ 22036838 (+)
G108648 NA non-coding upstream 193901 22025798 ~ 22026309 (+)
G108561 NA non-coding upstream 299800 21642583 ~ 21920410 (+)
G108723 NA non-coding downstream 65905 22340732 ~ 22355913 (+)
LOC122358849 NA non-coding downstream 71624 22346451 ~ 22349630 (+)
G108736 NA non-coding downstream 116856 22391683 ~ 22446892 (+)
G108743 NA non-coding downstream 226944 22501771 ~ 22511258 (+)
G108740 NA non-coding downstream 247923 22522750 ~ 22564181 (+)
G108573 NA other upstream 482523 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 484492 21735014 ~ 21735718 (+)
G108571 NA other upstream 487103 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 493944 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1005717 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 500822 22775649 ~ 22777725 (+)
G108990 NA other downstream 674313 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 680884 22955711 ~ 22959679 (+)
G109132 NA other downstream 971948 23246775 ~ 23271291 (+)
G109193 NA other downstream 1234605 23509432 ~ 23510315 (+)

Expression


Co-expression Network