LOC122358818 (si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474)


Basic Information

Item Value
gene id LOC122358818
gene name si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21791606 ~ 21833216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258726.1
TGAGCATCGTACCTTACCTGAAACCTTTCAGCGACTCTCATTGGTTCTTCTGTTTAATTTGGATGCATTTTTAACCACCTCGCTGAATTTTCCAATTGTCTAAGTGTGAGAGAAATCAGCAAGAACAGAAAGACCGGAGGAGTTTTACTACAATGAATCGAATATTGATCCCGATGCTGCTCGCTCTCGGGCTGTCCGGCGTGCGCGCGCACAGAGTGAATAAGCACAAGCCGTGGATCGAGAGCTCATACCACGGCGTCATCACAGAAAACACGGACGTGGTTCTGCTGGATCCTCCTTTAGTGGCTCTGGACAAAGACGCTCCGGTTCCGTATGCTGGTGAAATCTGTGGCTTTCACGTGCAGGGTCTCAGCGCTCCGTTCGAGGCCGTGGTTCTGAACCGTACGTCAGGGGAGGGCCGTCTGCGAGCGCGTGGACTGATCGActgcgagagacagagagagttcACCTTCATCATTCAGGCTCACGACTGCGGCACGGGGCCGGAGGGACACGCGGAGAAGAGATCACACaaGGCCGTGGTGCGTGTGCAGGTGGGAGACGTGAACGAGTTTTCTCCGGTGTTCGCTCAGTTGGAGTATCACGGCTCGGTGACGGAGGGCAAGGTGTATGACAGCATTGTGCAGGTGCAGGCGTCGGACCAGGACTGCTCTCCTCAATACAGCCAGATCTGCAACTACCAGATCACCTCTCAGGACGCAGCCTTCGCCATAGACCGCAACGGTAACATCAGGAACACGGAGAGCCTGAGCTTTGATAAGATGTCGCATTACAAAATCCGCGTGACGGCGCTCGACTGCGGTCAGAAGAGAGCGGCGCGGGACGCCGTCGTGCACATCCACGTCAAGCCTGTATGCAAGCCCGGATGGCAGGgCTGGAGCAAGCTGGTTGACTACGAACCGGGGACGGGCAGTAAGCTGTTATTTCCCAAGATGCACCTGGAGACGTGTGCGGGGTCGGTGTCGTGGATCAGGACCACGGTGGAGCTGGAGACCAGCGGTGCCGGGAGAGGCTGTGACAGACAGTCTTACTCTGAGCGCTCCTTACAGAAGCTCTGCGGAGCCTCATCAGGCAGCACAGATCTTCTGCCGGCCCCCAGCGGTGTTTTTAATTGGACGGCGACTCTTGTGACGGACGGCGGCCTGGACAGTGACCTCACATACCGCTTTGATGGTCGTCAAGCTGCCAAGATCCCAGACTGGGTCGTACTGCAGAATCTAACCCATCAGTTTACCATAACCACGTGGATGAAGCACGGGCCGAGTCCAGGACAGAGAGCCGAGAAAGAAACACTGCTCTGCAACTCTGACAAAACAGAGATGAACCGACACCATTACTCTCTGTACGTGCATAACTGCAGGCTGGTTTTCCTGCTGAGGACGGactacacacagacagactccTTCAGACCGGCCGAATTCCACTGGAAATTAGAGCAGatCTGTGATAAGGAGTGGCATTATTACGTCATCAGCGTTGATTTCCCAGTGGTGTCTCTGTATGTGGACGGCGTGACCTATGACCCGTATCTGGTGACGGACGACTGGCCCATCCACTCGTCTCAGATCGACGTGCAGCTCACCGTAGGAGCCTGCTGGCAAGgtgGTGAGGTCTCTAAAGCAAAGTTTACGCAGTATTTCAGAGGCAGTTTGTCTGGACTCACGGTACGAGCAGGAAAGATGGAAAGCCAGAAGATCATCTCCTGCCTACAGGCCTGCAAAGAAGGACTGGACATCACCTCACTGGAAAACCTCGGACAGAGGATAAAGGTTACACGCACATATCCGCCTAACTTTATAAAAACGCTGTACAAAATCTAAATCACAAATCCGAATGAACGAGCTACAGCCTCTTCAAGGTCACAGTTTTGATTGCACGTTCTGGAAAACGTTACACTGCAAGTCGCATTGCATTAGTCCTGAAAAGGAGTTCGCCCGTGAATAA

Function

NR:

description
PREDICTED: calsyntenin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258726.1 True 1965 mRNA 0.54 10 21791606 21833216

Neighbor

gene id symbol gene type direction distance location
LOC122358927 NA coding upstream 67626 21715201 ~ 21723980 (+)
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding upstream 208699 21567245 ~ 21582907 (+)
fat3a fat3,fat3a,LOC107564369,LOC107705473,LOC107585783,LOC107698854,LOC107745210 coding upstream 237066 21420083 ~ 21554540 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding upstream 495704 21285387 ~ 21295902 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding upstream 528162 21255183 ~ 21263444 (+)
clstn2b si:ch211-276c2.2,LOC107698872,LOC107669856,LOC107739921,LOC107585786 coding downstream 9447 21842663 ~ 22014307 (+)
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding downstream 218374 22051590 ~ 22065594 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding downstream 333898 22167114 ~ 22174542 (+)
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding downstream 350332 22183548 ~ 22205101 (+)
tiam1b tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792 coding downstream 386994 22220210 ~ 22274827 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding upstream 64036 21727060 ~ 21727570 (+)
G108553 NA non-coding upstream 174413 21616656 ~ 21617193 (+)
G108427 NA non-coding upstream 589097 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 601233 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 941691 20848722 ~ 20849915 (+)
G108648 NA non-coding downstream 192582 22025798 ~ 22026309 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding downstream 195221 22028437 ~ 22036838 (+)
G108713 NA non-coding downstream 344176 22177392 ~ 22178630 (+)
G108721 NA non-coding downstream 432616 22265832 ~ 22323620 (+)
G108723 NA non-coding downstream 507516 22340732 ~ 22355913 (+)
G108573 NA other upstream 53919 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 55888 21735014 ~ 21735718 (+)
G108571 NA other upstream 58499 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 65340 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 577113 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 942433 22775649 ~ 22777725 (+)
G108990 NA other downstream 1115924 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 1122495 22955711 ~ 22959679 (+)
G109132 NA other downstream 1413559 23246775 ~ 23271291 (+)
G109193 NA other downstream 1676216 23509432 ~ 23510315 (+)

Expression


Co-expression Network