tyr (tyr,LOC107670098,LOC107669900)


Basic Information

Item Value
gene id tyr
gene name tyr,LOC107670098,LOC107669900
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22714506 ~ 22731196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258729.1
tgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgaaggaggcAGGCAGATCAGGGAGTAAAGAGCAAGCGAGCTGCAGTTCTCCTAACTCCTCTGTGTCTAATGCCTGTCAGAGTCATGTCTCTGGCTCTGCTTCTGTTCTTCACTCAGCTCTGGTCTCGCTCTCTCCAGCAGTTTCCCCGGCCGTGCTCCACCTCGGACGTCCTGCGGAGCAAGCGCTGCTGTCCGGTCTGGCCGGGCGACGGCTCGGCGTGCGGCTCTCTGTCGGGTCGAGGCTTCTGTCAGGACGTGGCGGTGTCCGACCTCCCCCACGGGCCTCAGTACCCGCACTCGGGCCTGGACGACCGCGAGCGCTGGCCCCTGGTCTTCTACAACCGAACCTGTCAGTGCGCCGGGAACTACATGGGCTCCGACTGCGGCGAGTGCAAGTTCGGTTACTTCGGCGCCGGCTGCGCGGAGCGGCGGGAGTCCGTGCGCCGAAACATCCTCCAGCTGTCCGCGCCCGAGAGGCAGAGGTTCATCTCGTACCTCAATCTCGCCAAGACCACCGTCAGCCGGGACTATGTGATCGCCACGGGCACCTACGAGCAGATGAGCAACGGCTCCGCGCCCATGTTCTCCGACGTCAGCGTGTACGACCTGTTCGTCTGGATGCACTACTACGTGTCCCGCGACGCGCTGCTCGGGGGCCCCGGGAACGTGTGGGCCGACATCGACTTCGCGCACGAGTCGGCTGCGTTTCTGCCCTGGCACCGAGTTTACCTGCTGTTCTGGGAGCACGAGATCCGGAAGCTGACCGGAGACTTTAACTTCACCATCCCGTACTGGGACTGGCGCGACGCTCAGGACTGTGAGGTGTGCACCGATGAGCTGATGGGGGCCCGCAGTCCTCTCGGCCCCAACCTCATCAGCCCGTCCTCGGTGTTCTCCTCCTGGAAGGTGATCTGCTCTCAACCCGAGGACTACAACCAGCGCGAGGTTCTGTGTGACGGCTCTCCGGAAGGACCGCTGCTGCGTAATCCAGGGACCCACGACCGAAACCGTGTCCCGCGGCTGCCCACCTCCGCAGACGTGGAGTCGGTGCTGAGCCTGACGGACTACGAGACGGGCCTGATGGACAGGCGAGCCAACATGAGCTTCAGGAACGCTCTGGAAGGGTTTGCGAGTCCAGAGACGGGGCTGGCAGTCACGGGTCAGAGCTTGATGCACAACTCCTTACACGTCTTCATGAACGGATCCATGTCTTCAGTGCAGGGATCTGCCAACGACCCCATCTTCCTTCTACATCACGCTTTTATCGACAGCATCTTTGAGCAATGGCTGAGGAGACACCAGCCGCCCCGAACACACTACCCGACCGCCAACGCCCCGATCGGACACAACGACGGATATTACATGGTGCCCTTCATCCCTCTCTACAGAAACGGAGACTACTTCCTCTCCACTAAAGCTCTGGGTTATGAATATGCGTATTTACAGGACCCAAGTCAGCGGTTCGTGCAGGAGTTTCTGACGCCGTATCTGGAGCAAGCCCGGCAGATCTGGCGCTGGCTGCTGGCCGCGGGGATCCTCGGGGCGGCCGCGGCGGGAATCGTCGCGGTCATCATCGCCGTGGTGTTTCGCAGGCGGCCGAAGAGGAGGAAGTCGTACGGGGAGAGACAGCCGCTGCTGAACAGCAGTGAAGAGGAGGGATCGACTTCCTATCAGACGACGCTGTGACC
>XM_043258730.1
TGGAGTCACGTTAAAGGCTTTAGGGAGGGACTGAAACCTGTAATTAAAGCTCGACACCCGCTAAAAGAGGTTCAACGCAGAACTTCCCCGGACGGCGTGCGAGTCTATAGAGGAGCGACCGAAGCAGAGCACCGACTCCATTCACTGAGAGTCTTGGCGTTCGTCCACAGCTGACGGGCAGAAGCTCAACTCACACCGCCGCCTGTAGACCACTCGAGGTATTCAAGTCAAGTTCAGCGCTCGTGGAGTAATCGCGGTCGGGCAGAGGGCCAGCGCATGCCACTGACACGAAGAACTAGGCTACATTTAGATGACTGCTCCTTCAGACGCATGTGGTCGCGTTTATCACGCTAACTTTCCCCGGCCGTGCTCCACCTCGGACGTCCTGCGGAGCAAGCGCTGCTGTCCGGTCTGGCCGGGCGACGGCTCGGCGTGCGGCTCTCTGTCGGGTCGAGGCTTCTGTCAGGACGTGGCGGTGTCCGACCTCCCCCACGGGCCTCAGTACCCGCACTCGGGCCTGGACGACCGCGAGCGCTGGCCCCTGGTCTTCTACAACCGAACCTGTCAGTGCGCCGGGAACTACATGGGCTCCGACTGCGGCGAGTGCAAGTTCGGTTACTTCGGCGCCGGCTGCGCGGAGCGGCGGGAGTCCGTGCGCCGAAACATCCTCCAGCTGTCCGCGCCCGAGAGGCAGAGGTTCATCTCGTACCTCAATCTCGCCAAGACCACCGTCAGCCGGGACTATGTGATCGCCACGGGCACCTACGAGCAGATGAGCAACGGCTCCGCGCCCATGTTCTCCGACGTCAGCGTGTACGACCTGTTCGTCTGGATGCACTACTACGTGTCCCGCGACGCGCTGCTCGGGGGCCCCGGGAACGTGTGGGCCGACATCGACTTCGCGCACGAGTCGGCTGCGTTTCTGCCCTGGCACCGAGTTTACCTGCTGTTCTGGGAGCACGAGATCCGGAAGCTGACCGGAGACTTTAACTTCACCATCCCGTACTGGGACTGGCGCGACGCTCAGGACTGTGAGGTGTGCACCGATGAGCTGATGGGGGCCCGCAGTCCTCTCGGCCCCAACCTCATCAGCCCGTCCTCGGTGTTCTCCTCCTGGAAGGTGATCTGCTCTCAACCCGAGGACTACAACCAGCGCGAGGTTCTGTGTGACGGCTCTCCGGAAGGACCGCTGCTGCGTAATCCAGGGACCCACGACCGAAACCGTGTCCCGCGGCTGCCCACCTCCGCAGACGTGGAGTCGGTGCTGAGCCTGACGGACTACGAGACGGGCCTGATGGACAGGCGAGCCAACATGAGCTTCAGGAACGCTCTGGAAGGGTTTGCGAGTCCAGAGACGGGGCTGGCAGTCACGGGTCAGAGCTTGATGCACAACTCCTTACACGTCTTCATGAACGGATCCATGTCTTCAGTGCAGGGATCTGCCAACGACCCCATCTTCCTTCTACATCACGCTTTTATCGACAGCATCTTTGAGCAATGGCTGAGGAGACACCAGCCGCCCCGAACACACTACCCGACCGCCAACGCCCCGATCGGACACAACGACGGATATTACATGGTGCCCTTCATCCCTCTCTACAGAAACGGAGACTACTTCCTCTCCACTAAAGCTCTGGGTTATGAATATGCGTATTTACAGGACCCAAGTCAGCGGTTCGTGCAGGAGTTTCTGACGCCGTATCTGGAGCAAGCCCGGCAGATCTGGCGCTGGCTGCTGGCCGCGGGGATCCTCGGGGCGGCCGCGGCGGGAATCGTCGCGGTCATCATCGCCGTGGTGTTTCGCAGGCGGCCGAAGAGGAGGAAGTCGTACGGGGAGAGACAGCCGCTGCTGAACAGCAGTGAAGAGGAGGGATCGACTTCCTATCAGACGACGCTGTGACC

Function

symbol description
tyr Enables catechol oxidase activity. Acts upstream of or within several processes, including dopamine biosynthetic process from tyrosine; iridophore differentiation; and melanosome organization. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; male organism; melanoblast; neural crest; and presumptive retinal pigmented epithelium. Used to study color blindness and oculocutaneous albinism. Human ortholog(s) of this gene implicated in melanoma (multiple); ocular albinism; oculocutaneous albinism (multiple); retinoschisis; and vitiligo. Orthologous to human TYR (tyrosinase).

NR:

description
tyrosinase precursor

GO: NA

KEGG:

id description
K00505 TYR; tyrosinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258729.1 False 1724 mRNA 0.62 5 22720951 22731196
XM_043258730.1 True 1902 mRNA 0.61 7 22714506 22731196

Neighbor

gene id symbol gene type direction distance location
actn4 actn4,LOC107669904,LOC107570110,LOC106612603 coding upstream 97753 22572491 ~ 22616753 (+)
zgc:85932 NA coding upstream 144715 22547353 ~ 22569791 (+)
dhrs12la flj13639,LOC107725108,LOC107670134,LOC107669913,LOC103025652,LOC108433977,LOC108278219 coding upstream 206723 22499146 ~ 22507783 (+)
scg2a LOC107585745,LOC107670131,LOC107725137 coding upstream 220887 22489884 ~ 22493619 (+)
kcne4 LOC107669903,LOC107725203,LOC107733928,LOC107558850,LOC107670090 coding upstream 238795 22474004 ~ 22475711 (+)
naalad2 naalad2,LOC107560856,LOC107737433,LOC107670141,LOC107669901,LOC107731810 coding downstream 20338 22751534 ~ 22764962 (+)
lrrc51 LOC107706076,LOC107558849,LOC107670099,LOC107669906 coding downstream 77584 22808780 ~ 22813270 (+)
LOC122358711 NA coding downstream 92867 22824063 ~ 22834787 (+)
LOC122359066 NA coding downstream 96154 22827350 ~ 22829929 (+)
LOC122359067 NA coding downstream 104463 22835659 ~ 22837519 (+)
G108906 LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104 non-coding upstream 48213 22660985 ~ 22666293 (+)
G108777 LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915 non-coding upstream 66161 22587935 ~ 22648345 (+)
LOC122358854 NA non-coding upstream 85394 22619676 ~ 22629112 (+)
G108740 NA non-coding upstream 150325 22522750 ~ 22564181 (+)
G108762 NA non-coding upstream 181279 22532872 ~ 22533227 (+)
G108949 NA non-coding downstream 43582 22774778 ~ 22775573 (+)
G108981 NA non-coding downstream 106489 22837685 ~ 22838122 (+)
G108986 gria4a non-coding downstream 138379 22869575 ~ 22988641 (+)
G109006 LOC104959606 non-coding downstream 267334 22998530 ~ 23006786 (+)
LOC122358995 NA non-coding downstream 309874 23041070 ~ 23066216 (+)
G108573 NA other upstream 976819 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 978788 21735014 ~ 21735718 (+)
G108571 NA other upstream 981399 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 988240 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1500013 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 44453 22775649 ~ 22777725 (+)
G108990 NA other downstream 217944 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 224515 22955711 ~ 22959679 (+)
G109132 NA other downstream 515579 23246775 ~ 23271291 (+)
G109193 NA other downstream 778236 23509432 ~ 23510315 (+)

Expression


Co-expression Network