sgpp2 (sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257)


Basic Information

Item Value
gene id sgpp2
gene name sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22167114 ~ 22174542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258742.1
gttatttttgttctaattaaatattagtgctgatgcttcaataatttattttattgtcaagGATATGATCTGTTTTTGTGTGCTGCTATAAATAAGATCAAAGCGCCTTAGCTTGATCactttattatttctgaaaaacGCTTTCAGATACGTCACCAAAAGACTAGAATGACactatattaatttcttttaaagtcACAGTGTCAAAGGTAGGCTACTGCATGGCAGGAACGACCCACCTGTGCAGGTACGACAGGCAGGTAATTTTCCGTAAACATGTCAGCCAATCAAAACCGCGAGGAGCGCCTACGTCAGCACACTTTCACGCTCTGTCACCTGCAGCTGTAAAACACCTGTGCACGCGGGCTGGGTGCGGaagcgcgtgcgtgcgtgcacCGAGAACTCAAACTCCGCGCGGCCATGCGGGGGTTCATCTCGTACCTGAACAGCCCCGAGCTGGTGGCCGGTTTCCAGCGGTGCTGCGGCCTGGTTCCGAGAGAGACGCGCGCGCAGGTCAGCCAGAACGGACTCGTTCAGGACGGTCCGGTCACGAGCCACCGGCGCCGAGCGGAGCGGGTGGCGAACGGGACGTCGCGCGCGCACGACCGTAACTCCAACTATAAGCCCGGCAGCTCACCGCGTGAAGCCCAAGGCGAAGGGCGTCCCAAATCTCGTTATGAGGTGAGGAACTGGCTcttctacttcctgtttgtgACTTCGGCTACTCTGGGCCATGAGGTCTTTTACATCACCTTTCTGCCCTGCATCCACTGGAACCTCGACCCGTTTCTGTGCAGACGGCTCGTCAACGTGTGGGCTGTGGTGATGTATATCGGGCAAGCGATGAAGGATGTTTTGAAGCTGCCCCGTCCTCCGTCTCCTCCTGTGGTCAAACTGGAGACTCGCGTGGACGCGGAGTACGGGATGCCTTCCACGCACGCCATGGCGGCCACGGCCATCTCATTTACTCTACTTCTGAGCGCTCAGGAAAGAGTGAAGTTCCCGTTTGAACTGGGACTGATTGTGGCCGTGGTTCTCTCTGCGCTGGTGTGTCTGAGTCGTCTTTATACCGGCATGCACTCTGCTCTGGATGTGATCTGTGGCGTTGTTATTTCAGTCGTCGTCATGGCTGCGTCGTACCCGTACTGGGGAACCATTGACTACCTTCAGCTGCACAGCCCTCTCTCCCCCGTAGTGGGGCTGGTTCTGCCCCTCTTCCTGTCCTATAAGTACCCCGAGCTGGACCATTACAGCACCACACGGGGGGACACCACCATCATTTTAGCATGCTGTTCGGGATGTTCAGTCGGATACTGGGTGAATGAGCGATTGggcttgacctttgacctcgcCGGGCCTTTTCCAGCGACCCTTCCCCCGCTGACCCTCGCAGCCTTGGGTCTCGGTGCGGCGCGGTTCCTGGTCGGGGTAGGGATGCTGGTTTTGACCCGGCAGACGGTGCGCTGGGTGAGTCTGAGGGTGCTCTGTCGAATCTACGGAGCGTCTGTGAGCGACGTCGACGCACGCAGGAGGAAAGAGATCGAGGTGCCGTATAAGTTCAGCACGTACGTTGCCATCGGACTGGTCAACAGTATCTTGGCGAACAGGGTGTTCGTGATGATGGGACTCTGGGATTTGGGAAATTCGGTGTAATTTCTCGGTGTTTACAGGCAAGAATTAAATATCAACAcactgaacagttaaactgaaaTCTACTCACGAGTGACGTCCACTCTCTCGGTATGTTCAGATTCGCACACTCTTGCAAACTATTCTAACTCAAACTTTCCAACCGAGGGTCGAAAGAGTTGTCAGAAGTTCAATGGCACTGAAGTCGTTTGACTGGACAAGTTTTTCTTCTGACAGATGTATTTACGCTTGTCCATTTGTGGAGATCATCACAAAAAGCGTAAGAATACTATACTTTTATCGGCCCCAGAGCTTATTTTCTCCAGTGATCCAAAAGCCAATGGAAAAatcatattgtgtttttatcagcttacCAGGGCGATGCTAACTTCCTGTTTTGGTCTACTAAAGTTACGTAACCTCTGCCCTAAACACAGCTGGTCAAGTCAGTGCTTTAACATTTCACCTTCAATCTCTTTTAACAGCGTCTACAGCAAACTGTGGATTTCTTTCTGTCATGACCTACATCTAATTACAAAGTGCAAATACAGACGTcattgcaaatgcatttttctcaggGTAAACGGTTGATAATATCGTTTTCTGTGGTAACTACtaacttgaatatttcttttgatattttcttAAAGACAGCGTCGCCTTAAATGTCTAATCTTGCACTATAAGCCACAGATTATGCTCAGGTGTGTTCTTCTGCGGTTGAGTGGTTTTCGGCTGCGAGActtcaattgtttttaatggaAATCCATGTAATCTGGAAGATTTTGTGACTTGATTCAAGATGTTTGcccaaatttatttatatggtATGAATTTGCCGCTGTTGGCCGACAGAAAGCTTGcttaatttgaaaatgatttctgCAATAGGCTTTTTTGCAGCAAAATGTTGCAAAAGTGAGCACATTGAGTGGATGAAATGACAAACCGAtgttagcatttttttctttactatgAATTTACAtatgaatttaatatttcttacaaagcaatatataacatattttgtaTAGTGAGTGGTGTGACACTcaggatgtgtgtgtttacgAGCTTTTACAGATGTggtaaaagaaatgaatgaacacAGTAAAACCGTCTCCcctc

Function

symbol description
sgpp2 Orthologous to human SGPP2 (sphingosine-1-phosphate phosphatase 2).

NR:

description
sphingosine-1-phosphate phosphatase 2

GO: NA

KEGG:

id description
K04717 SGPP2; sphingosine-1-phosphate phosphotase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258742.1 True 2754 mRNA 0.48 5 22167114 22174542

Neighbor

gene id symbol gene type direction distance location
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding upstream 101520 22051590 ~ 22065594 (+)
clstn2b si:ch211-276c2.2,LOC107698872,LOC107669856,LOC107739921,LOC107585786 coding upstream 152807 21842663 ~ 22014307 (+)
LOC122358818 si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474 coding upstream 333898 21791606 ~ 21833216 (+)
LOC122358927 NA coding upstream 443134 21715201 ~ 21723980 (+)
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding upstream 584207 21567245 ~ 21582907 (+)
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding downstream 9006 22183548 ~ 22205101 (+)
tiam1b tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792 coding downstream 45668 22220210 ~ 22274827 (+)
LOC122358842 NA coding downstream 103446 22277988 ~ 22279228 (+)
LOC122358834 zgc:110333,LOC107722269,LOC107670094,LOC107585751,LOC107669883,LOC107705634,LOC107558842 coding downstream 108138 22282680 ~ 22284032 (+)
cldn8.1 cldn8,LOC107722270,LOC107670101,LOC107705635,LOC107669885,LOC107578419 coding downstream 112248 22286790 ~ 22288670 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding upstream 130276 22028437 ~ 22036838 (+)
G108648 NA non-coding upstream 140805 22025798 ~ 22026309 (+)
G108561 NA non-coding upstream 246704 21642583 ~ 21920410 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding upstream 255759 21634201 ~ 21911355 (+)
G108713 NA non-coding downstream 2850 22177392 ~ 22178630 (+)
G108721 NA non-coding downstream 91290 22265832 ~ 22323620 (+)
G108723 NA non-coding downstream 166190 22340732 ~ 22355913 (+)
LOC122358849 NA non-coding downstream 171909 22346451 ~ 22349630 (+)
G108736 NA non-coding downstream 217141 22391683 ~ 22446892 (+)
G108573 NA other upstream 429427 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 431396 21735014 ~ 21735718 (+)
G108571 NA other upstream 434007 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 440848 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 952621 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 601107 22775649 ~ 22777725 (+)
G108990 NA other downstream 774598 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 781169 22955711 ~ 22959679 (+)
G109132 NA other downstream 1072233 23246775 ~ 23271291 (+)
G109193 NA other downstream 1334890 23509432 ~ 23510315 (+)

Expression


Co-expression Network