cldn8.1 (cldn8,LOC107722270,LOC107670101,LOC107705635,LOC107669885,LOC107578419)


Basic Information

Item Value
gene id cldn8.1
gene name cldn8,LOC107722270,LOC107670101,LOC107705635,LOC107669885,LOC107578419
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22286790 ~ 22288670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258754.1
GATTTCATAGCAACCAGCCCGGAGTTCCCTCCCTCCCCTGAGCGAGAGGGCGGAGGCTGGGAACAGGTGAATGCCTATCAGCTCCCATTCCAGCGGGATGCAAAACCTCACAGTCTAAACCAGTCCTCACTCTTCAGGCTCCCGGAATCATGGCGAGCGGCGCCCTGGAGATCGTGGGAATGTGCGTGAGCCTGATCGGCCTCATCGGGGTGGCGGCTAGCACCGGGATGCCGATGTGGCGGGTCACGGCGTTCATCGGGGAGAACATCATCGTGATGGAGACCCGCTACGAGGGCTTGTGGATGAACTGCTTCCGGCAGGCCAACATTCGGATGCAGTGTAAGGTGTACGACTCTTTGCTGGCGCTGTCTCCAGACCTCCAGGCTGCCCGGGGTCTCATGTGCTGCTCTGTGGCGCTGACCGGGCTGGGTTTACTGATTGCCATCGCCGGGATGAGGTGCACGGCGTGCATCCAAGGGAACGACCGCGCCAAGCGCATGGTTCTGATCATCGCCGGCTGCATGATCCTAGCGGGCTGCCTCTGCTGCATCATCCCCGTCTCCTGGACCGGACACGCCATCATCCAGGATTTCTACAACCCCTTGCTCATCGATGCCCAGCGTAGGGAGCTCGGGGAGGCGTTGTACATCGGTTGGGTCTCTTCCGCCTTCTTATTCGCCGGCGGGTGCATATTCACCTGCTGCAGCGGGCCCCTGGACAAGGGCCCGGATCCGAGGTACATGTACACCAGGAACCCACCCTATGTGGCCTATCAGCCGCAACCCGTGGCCTATCACCCTCAGCCTCGCTCGGTGTACAGTCACCCGTCCGGGCCACCGTCGTTCATCGAGCAGTCGTACCAACCGTCCAGACAGCAGTCGTTCATTCAGCCGTCCCGACATCCGTCCGCCCGCAGCGCCGTGGCTTATCTCTAAAATCCAGCTGGACGTCTCACAagcttgtgtgtttatgttagAGACAGATGAAAAGGACAGGCTTCTaaccaaaagtttttttttttttttttaagtatatttggaaacaaaactgtttcatttttgggaacGTTTTCGGCTATGTTTAGATGTTATTTCTACTCATATCTATGCAGGAGCGGATGACAGATGTGAAGAACGTCTaaccaaagcttttttttttacacaaggtaaagatatttggaaatatttaaaaaggggttacacttcattttaaggtgtccttgctACAGTTTAATTCTACATTTAAAGAAGGAGTACTTTATAAGTAGAGCttggcttagggttacttgcatgtaattatacataatttattgttattataatagtaaatacacagcatgtaacatatataaaaacaacaccttaaaataaaatgttatctctgttttaaatttaacaaaCGTAggcctacatttatttatttatttttctgttccaTTCTTAAGAATGTTTTTGAATGCCATTTCTAATTTGGCTTTTTAAGtaggaaagaaaaaatgaatttcTAGCCATGggtgttacaaaaaaaaaaaaaaaacattttataaacttGGGcctgcatttcatattttttttttttttggggagaACGATTTTGACAGAATAGTTAATATAGTAAGAGAACTTTGAGAACTGTGACTAAGATGAAGAattgtttttaagatttttttgttgttgtttttatatgattCAATGTAAAGTACAGATAACAGATCATACCTCAGGATGTTGTAAAGTATGTTAATCGAGGTATTTTTGTATTATCTCAAAGCTGTCTATAATAGAAATgaggaaataaatgttttatattgagatatgtgtttttatgtgaataCCAAGGCGcaaaaaacaatgctttaactcaataaacaagtaaaaaata

Function

symbol description
cldn8 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Located in endoplasmic reticulum and plasma membrane.

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258754.1 True 1881 mRNA 0.45 1 22286790 22288670

Neighbor

gene id symbol gene type direction distance location
LOC122358834 zgc:110333,LOC107722269,LOC107670094,LOC107585751,LOC107669883,LOC107705634,LOC107558842 coding upstream 2758 22282680 ~ 22284032 (+)
LOC122358842 NA coding upstream 7562 22277988 ~ 22279228 (+)
tiam1b tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792 coding upstream 11963 22220210 ~ 22274827 (+)
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding upstream 81689 22183548 ~ 22205101 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding upstream 112248 22167114 ~ 22174542 (+)
LOC122358830 LOC107722268,LOC107585749,LOC107670104 coding downstream 1260 22289930 ~ 22293389 (+)
grik1b grik1b,LOC107670116,LOC107669874 coding downstream 6646 22295316 ~ 22325707 (+)
slc8a2b slc8a2b,LOC107670115,LOC107725154,LOC107585757,LOC107558827,LOC107669914 coding downstream 71368 22360038 ~ 22443692 (+)
acsl3a acsl3a,acsl3,LOC107585759 coding downstream 158924 22447594 ~ 22471189 (+)
kcne4 LOC107669903,LOC107725203,LOC107733928,LOC107558850,LOC107670090 coding downstream 185334 22474004 ~ 22475711 (+)
G108713 NA non-coding upstream 108160 22177392 ~ 22178630 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding upstream 249952 22028437 ~ 22036838 (+)
G108648 NA non-coding upstream 260481 22025798 ~ 22026309 (+)
G108561 NA non-coding upstream 366380 21642583 ~ 21920410 (+)
G108723 NA non-coding downstream 52062 22340732 ~ 22355913 (+)
LOC122358849 NA non-coding downstream 57781 22346451 ~ 22349630 (+)
G108736 NA non-coding downstream 103013 22391683 ~ 22446892 (+)
G108743 NA non-coding downstream 213101 22501771 ~ 22511258 (+)
G108740 NA non-coding downstream 234080 22522750 ~ 22564181 (+)
G108573 NA other upstream 549103 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 551072 21735014 ~ 21735718 (+)
G108571 NA other upstream 553683 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 560524 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1072297 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 486979 22775649 ~ 22777725 (+)
G108990 NA other downstream 660470 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 667041 22955711 ~ 22959679 (+)
G109132 NA other downstream 958105 23246775 ~ 23271291 (+)
G109193 NA other downstream 1220762 23509432 ~ 23510315 (+)

Expression


Co-expression Network