LOC122358990 (LOC107586958,LOC107704764,LOC107752630)


Basic Information

Item Value
gene id LOC122358990
gene name LOC107586958,LOC107704764,LOC107752630
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18993345 ~ 18995991 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259015.1
agatagatagatagatagatagatagtcacGACTTCACTTCGTTTATCACATTACATACTGTAAGGACAATGGCAGTTATCATCTAggacattttgtaataataataataaaaataataatgatttattcttattattattataaaagacCTTTGCCGATATAATAACACGATAGGAAAGATATGACCAGTACctaaatatgcaaaatgctCTACTATACCATAAAAAGGTGAAATTATTCGAATCATAATCAGTGTAAACAATGCAAGCGCAAACAAACCCCGCCACACACTTTTGCTTCTCGTGGTGGAAgcttaacaaacattttaaggAAAAGTGTGCCCTCTGATGGACGAGAGAAGAAAAAACTAGCTTCAAAACGATTGAAAGCGTCAACCGAGACGTGACGTTGTCAGCGTGCGCGATCAAAAGAATTCTGAGCGGTGATTGGCCGTCAATCAAACGAGAGTGAAGTGCGTCTCCTAGCAACCGGCCAGAGTCTCGTCTTGTTCATAGCAGCAGGCTCTAGTTCGGACATGGAAAGATACAAACAGGAAAATGTACATCCTTTGCCGAAGCGTGTGATTCAGCGGGACAGAGATGTGACCCACCTTCATCTCGCCAGAAGAGGATTGACTTTCATTCCAGATTTGTCAAGGTTTTCCATGCTGAGATGCGTGTGGCTTAACAATAACAGGATCCGAGAGGTTTCCAGAGCTTCATTTAACTGCTGCTTAACAGAACTTTATCTACAGGACAATGACATTTCCTCTATTTCAGGGGCATTGAGACACCTGACGTGTCTTCAAGTGCTGCTCCTATTCAATAATCAGATGAAGTGCTTGGAGGAGACAGTGTCAGAGCTGAAGAACATGCAAGACCTCCACACTCTCTCTTTATATCTCAACCCTTTCACGCAAGATCCTGATTACCGGCAATACGTGCTGCATCATTTACCATCTGTGAAGTTTTTAGATAGAAAAGAAGTGACGCAGGAAGAAAGAAGACGGGCATTTAAGCTCTTCGGTGTAGAAAGACAAAGGGTGCTTGATACCATCGCCTTTGGCAGACGAGCACTACCGCCTCCTACAGGAAGAAAAACGACCAACTCCATCACAAAACCAGTCGGTCAGCAAGGCTCAAGAAAGAGGTGTACAGACAGTCGTTCTGATGATCGAGAAAACCCATCAGTGCCCAAATCCATCATCCAGTTCTCCATTATGAACTGGACCGGTTCAAGCACGTCTCAGTGGAACCATCTACATGACTCAAGCAAACCTGCGTCTGGTATACTCACTGTCAAACTCGGATGA
>XR_006252666.1
agatagatagatagatagatagatagtcacGACTTCACTTCGTTTATCACATTACATACTGTAAGGACAATGGCAGTTATCATCTAggacattttgtaataataataataaaaataataatgatttattcttattattattataaaagacCTTTGCCGATATAATAACACGATAGGAAAGATATGACCAGTACctaaatatgcaaaatgctCTACTATACCATAAAAAGGTGAAATTATTCGAATCATAATCAGTGTAAACAATGCAAGCGCAAACAAACCCCGCCACACACTTTTGCTTCTCGTGGTGGAAgcttaacaaacattttaaggAAAAGTGTGCCCTCTGATGGACGAGAGAAGAAAAAACTAGCTTCAAAACGATTGAAAGCGTCAACCGAGACGTGACGTTGTCAGCGTGCGCGATCAAAAGAATTCTGAGCGGTGATTGGCCGTCAATCAAACGAGAGTGAAGTGCGTCTCCTAGCAACCGGCCAGAGTCTCGTCTTGTTCATAGCAGCAGGCTCTAGTTCGGACATGGAAAGATACAAACAGGTATGACTGCCCGTATGGATGGACTGCGTTTTAATATAGATGAATtaacttatgtttttttttcctttcccctCCGCAGGAAAATGTACATCCTTTGCCGAAGCGTGTGATTCAGCGGGACAGAGATGTGACCCACCTTCATCTCGCCAGAAGGTGCttagagaaaaatataaagaaataataaaataaaataaaaaatatatatacataaagttTTTAGACAATAAGATgtgatatatatctatatctatatatatgcatgtaaaaatgtattagaatGTACAATGTGCATAAGAATGatttaacatgaaaaatatttgcatttatttgtatatttccCTTTCGTTTTCCATCTGTTTTTAGAGGATTGACTTTCATTCCAGATTTGTCAAGGTTTTCCATGCTGAGATGCGTGTGGCTTAACAATAACAGGGTTAGATTGCCTGACTAATAGTAGAATTTTACCTTGTAGCttttgctgcttaaaataacattttgaagcttaaaataatgtttgttttaaaaataaaactttcagTCTAACAAGAGTGAGCGACTTTACAGATCCGAGAGGTTTCCAGAGCTTCATTTAACTGCTGCTTAACAGAACTTTATCTACAGGACAATGACATTTCCTCTATTTCAGGTCAGCTTGTGCAGTAAAGGTGTTTTATATTTACGTACCTTTGGAGTTTCTTAAGTTCTAACCTTTTTTCTGTCTGCATTCAGGGGCATTGAGACACCTGACGTGTCTTCAAGTGCTGCTCCTATTCAATAATCAGATGAAGTGCTTGGAGGAGACAGTGTCAGAGCTGAAGAACATGCAAGACCTCCACACTCTCTGTGAGATCCCGAGACCACCATCTGTCCTTCAACCAATGCATTCCCTAGTATAGTTAACTATAAACACTCCTTGgtatttaaaagttaatatagCATTTAATTAAGACTTTAAAAGCTAATTTTACACCATTTGTAcaaccaaaatataaaagtattggTATTATAatgattgtatatatttttttcaagtaattgTTTTggcaaaaagtcattttagatcTTCTGTTTCAGCTTTATATCTCAACCCTTTCACGCAAGATCCTGATTACCGGCAATACGTGCTGCATCATTTACCATCTGTGAAGTTTTTAGATAGAAAAGGTTGGCATTCATATTCATACGAACTTCCAATATTAGAACAATTCACCAAAACCGATCAAAGATACCACATGAATAATTATGTGATTGGATAAACTAATTagaaagcagttgtgctgctttattattttgttaaccGTTTTGGGTGAGATTTAAATCGGTATATAAGAAAGATTTCTGAACGATCATGCGACACCTAATGcgaaaattaagctttgccgtcacaagaataaattacattttacaatatattaaaacggaaaacagctgttttggattgtaataatatttcagaatactACCGTTTTTACTGTacgtaaataaatgcagtcttggttaGCATAAGGGTCTTcgttaaacacattaaaagtcTTAAATGCTCCAGACTTTTAAGCAGTGAGGTACTGTATAATTGGCAGAAGTGACGCAGGAAGAAAGAAGACGGGCATTTAAGCTCTTCGGTGTAGAAAGACAAAGGGTGCTTGATACCATCGCCTTTGGCAGACGAGCACTACCGCCTCCTACAGGAAGAAAAACGACCAACTCCATCACAAAACCAGTCGGTCAGCAAGGCTCAAGAAAGAGCAGTCGTTCTGATGATCGAGAAAACCCATCAGTGCCCAAATCCATCATCCAGTTCTCCATTATGAACTGGACCGGTTCAAGCACGTCTCAGTGGAACCATCTACATGACTCAAGCAAACCTGC
>XR_006252667.1
agatagatagatagatagatagatagtcacGACTTCACTTCGTTTATCACATTACATACTGTAAGGACAATGGCAGTTATCATCTAggacattttgtaataataataataaaaataataatgatttattcttattattattataaaagacCTTTGCCGATATAATAACACGATAGGAAAGATATGACCAGTACctaaatatgcaaaatgctCTACTATACCATAAAAAGGTGAAATTATTCGAATCATAATCAGTGTAAACAATGCAAGCGCAAACAAACCCCGCCACACACTTTTGCTTCTCGTGGTGGAAgcttaacaaacattttaaggAAAAGTGTGCCCTCTGATGGACGAGAGAAGAAAAAACTAGCTTCAAAACGATTGAAAGCGTCAACCGAGACGTGACGTTGTCAGCGTGCGCGATCAAAAGAATTCTGAGCGGTGATTGGCCGTCAATCAAACGAGAGTGAAGTGCGTCTCCTAGCAACCGGCCAGAGTCTCGTCTTGTTCATAGCAGCAGGCTCTAGTTCGGACATGGAAAGATACAAACAGGTATGACTGCCCGTATGGATGGACTGCGTTTTAATATAGATGAATtaacttatgtttttttttcctttcccctCCGCAGGAAAATGTACATCCTTTGCCGAAGCGTGTGATTCAGCGGGACAGAGATGTGACCCACCTTCATCTCGCCAGAAGGTGCttagagaaaaatataaagaaataataaaataaaataaaaaatatatatacataaagttTTTAGACAATAAGATgtgatatatatctatatctatatatatgcatgtaaaaatgtattagaatGTACAATGTGCATAAGAATGatttaacatgaaaaatatttgcatttatttgtatatttccCTTTCGTTTTCCATCTGTTTTTAGAGGATTGACTTTCATTCCAGATTTGTCAAGGTTTTCCATGCTGAGATGCGTGTGGCTTAACAATAACAGGGTTAGATTGCCTGACTAATAGTAGAATTTTACCTTGTAGCttttgctgcttaaaataacattttgaagcttaaaataatgtttgttttaaaaataaaactttcagTCTAACAAGAGTGAGCGACTTTACAGATCCGAGAGGTTTCCAGAGCTTCATTTAACTGCTGCTTAACAGAACTTTATCTACAGGACAATGACATTTCCTCTATTTCAGGGGCATTGAGACACCTGACGTGTCTTCAAGTGCTGCTCCTATTCAATAATCAGATGAAGTGCTTGGAGGAGACAGTGTCAGAGCTGAAGAACATGCAAGACCTCCACACTCTCTGTGAGATCCCGAGACCACCATCTGTCCTTCAACCAATGCATTCCCTAGTATAGTTAACTATAAACACTCCTTGgtatttaaaagttaatatagCATTTAATTAAGACTTTAAAAGCTAATTTTACACCATTTGTAcaaccaaaatataaaagtattggTATTATAatgattgtatatatttttttcaagtaattgTTTTggcaaaaagtcattttagatcTTCTGTTTCAGCTTTATATCTCAACCCTTTCACGCAAGATCCTGATTACCGGCAATACGTGCTGCATCATTTACCATCTGTGAAGTTTTTAGATAGAAAAGGTTGGCATTCATATTCATACGAACTTCCAATATTAGAACAATTCACCAAAACCGATCAAAGATACCACATGAATAATTATGTGATTGGATAAACTAATTagaaagcagttgtgctgctttattattttgttaaccGTTTTGGGTGAGATTTAAATCGGTATATAAGAAAGATTTCTGAACGATCATGCGACACCTAATGcgaaaattaagctttgccgtcacaagaataaattacattttacaatatattaaaacggaaaacagctgttttggattgtaataatatttcagaatactACCGTTTTTACTGTacgtaaataaatgcagtcttggttaGCATAAGGGTCTTcgttaaacacattaaaagtcTTAAATGCTCCAGACTTTTAAGCAGTGAGGTACTGTATAATTGGCAGAAGTGACGCAGGAAGAAAGAAGACGGGCATTTAAGCTCTTCGGTGTAGAAAGACAAAGGGTGCTTGATACCATCGCCTTTGGCAGACGAGCACTACCGCCTCCTACAGGAAGAAAAACGACCAACTCCATCACAAAACCAGTCGGTCAGCAAGGCTCAAGAAAGAGCAGTCGTTCTGATGATCGAGAAAACCCATCAGTGCCCAAATCCATCATCCAGTTCTCCATTATGAACTGGACCGGTTCAAGCACGTCTCAGTGGAACCATCTACATGACTCAAGCAAACCTGC

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 72-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259015.1 False 1313 mRNA 0.43 9 18993345 18995991
XR_006252666.1 True 2423 transcript 0.36 3 18993345 18995960
XR_006252667.1 False 2340 transcript 0.36 4 18993345 18995960

Neighbor

gene id symbol gene type direction distance location
arl4aa arl4aa,LOC107704720,LOC107752852,LOC107588218,LOC107582295 coding upstream 195021 18797439 ~ 18798324 (+)
vwde vwde,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 218695 18772258 ~ 18774650 (+)
tmem106ba tmem106b,LOC107704771,LOC107587075,LOC107752274,LOC107582242,LOC107730846,LOC107683194 coding upstream 222951 18766852 ~ 18770394 (+)
LOC122358576 NA coding upstream 259107 18727691 ~ 18734238 (+)
LOC122358577 NA coding upstream 265789 18724523 ~ 18727556 (+)
tspan13a tspan13a,LOC107704717,LOC107752827,LOC107582238,LOC107683454,LOC107730871,LOC107579983 coding downstream 6682 19002673 ~ 19005341 (+)
lta NA coding downstream 39984 19035975 ~ 19040881 (+)
tnfb NA coding downstream 50492 19046483 ~ 19048861 (+)
ppt2a.2 LOC107730851,LOC107683375,LOC107582233,LOC107752135,LOC107704757,LOC107586894 coding downstream 137034 19133025 ~ 19137062 (+)
si:ch73-95l15.5 si:ch73-95l15.5,LOC107752121,LOC107704750,LOC107683319,LOC107730848,LOC107586839,LOC107586854 coding downstream 142135 19138126 ~ 19146425 (+)
G107866 NA non-coding upstream 34570 18956820 ~ 18958775 (+)
G107874 NA non-coding upstream 44730 18948395 ~ 18948615 (+)
G107873 NA non-coding upstream 45287 18947718 ~ 18948058 (+)
G107872 NA non-coding upstream 45960 18947047 ~ 18947385 (+)
G107871 NA non-coding upstream 46464 18946537 ~ 18946881 (+)
G107996 NA non-coding downstream 175896 19171887 ~ 19221052 (+)
G107999 mrpl44 non-coding downstream 220890 19216881 ~ 19218097 (+)
G108011 LOC107752015,LOC107683384,LOC107582227,LOC107586802 non-coding downstream 226749 19222740 ~ 19227382 (+)
G108055 NA non-coding downstream 492235 19488226 ~ 19535847 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding downstream 518990 19514981 ~ 19517474 (+)
G107777 NA other upstream 149490 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 197363 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 232848 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 234509 18756343 ~ 18758836 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other upstream 876392 17832072 ~ 18116953 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 725293 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 1188129 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 1193042 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 1212179 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 2215819 21211810 ~ 21214493 (+)

Expression


Co-expression Network