nufip2 (nufip2,LOC107714169,LOC107666195,LOC107592914,LOC107756500,LOC107587528,LOC107682614)


Basic Information

Item Value
gene id nufip2
gene name nufip2,LOC107714169,LOC107666195,LOC107592914,LOC107756500,LOC107587528,LOC107682614
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16423297 ~ 16433885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259059.1
TGTGGCCTTGACTGGGAAGCTTCCACGCCTTGCATCGCGACGCACTAAACACCGCCCGCCTCTCTCTGGCACCCCCAAACGCAGGCGGTGATTGGGCAGCGCAAATGTCTCAACTCCCCTCGTCCACCGAGCACCGGTTGAGCACATTTTGTCACTTGCGCTAGCGTTAAATGGAGGAACGTCCCTGCGAAGGGGCAACCGGAGTATATATCAGTCATGGAGCAGAGAACGGCCCTGATCGATCGAACATATCGGTAAACAATGATCAGAACCACAGTCAGTTCCAGAACGAGAAAACGCAGACGAAGAAAACAGaaaatggcaaaataaatggaACTCTGAAGGAGGGAGAGGTGACTCCCGCTTCCTTTAACCCAGACAGCTCCCTGCACCCCACGAACAGCAATGGCGACAGACACCTGCTAGACATCAACTTGAAACAGAAGCCCACTCGACGGGCCTTCACCGCTGACTCAACAGGGGACAGAAAAGGTAGAAACACTAGCAGAAACAGCATGGACTTCAAAAATGACAAGCCCTCAGAGTTGAACACACTTGAGGGCAAAAAAGAGGCTCTGGCTACTCTGAACGGTGTGGTGTCACTCAACTCTGTACTGCTTACCAACGGTTACCCTAGCAAACCTGGAGCGGATAATGACGGCAGTGGCTCCGAGAGTGGATACACTACTCCCAAGAAGCGCCGGGCTCAGAGGAATGGCAAAGCCGGGGAAAATGTGACTGCTTCTGCCCAGGGAAAAGCCATGCAGCAGGGCAGCAAACAAGACCACGGGCCTGTGGCGCCGGACTCAGCCTATGGCTCTCAGGTGGAGAGTGGTAGAACCGGTTCAAAAGCCGAGCTGCACCTAAAAGCCAAGGAACCACCTGCCTCCGCCACCCCACCTCCTCTGCCGGTGGCTGAACTTCAGCGTAAGAACTCGGACAGCAAAGCGGCTGGCAAGCGGTTCGAGGATCGCTCCAGCAAGGTCAAGGTGGCTACCTCCACCAAAGAGGACTCATGGACTTTGTTCAAGCCTCCGCCTGTCTTTCCTGTGGACAATAGTAGCGCTAAGATTGTGCCTAAGATCAGTTATGCAAGCAAAGTGAAGGAGAACCTCAATAAGACTGCCCAAGCTGGCGGGGAGGCTCTCACTCATGCTCCCCAGGTGCCTGGGAGACCGCCACAGGTCCCCATGTCTGCGGTGAAAACCATCACCTCGGCTAGCTTTACCAACGGTCCCCTTCCGGGGGAAGGGAATGGCTGTCCCCTGCCCGGCCCCCATTTCAGCGCAGGCCCTCTGCTGGTGACCCCGGCTGTTGCAGCTGAGAATGTAGCATCTCCCCCTGGTAGCGGCACTTCGGCCGTCGGAAGTTCTGCGATCTCTGTGGCTGAGCCCAGGAAGCCCAGTCTGTTCGTTTACCCTGTCACCTCCTCCAATATGCAACTCTCGCTCCCTAGTGGCCGCCAAGCCGATCCCCCTGCTGCTCCGACAAATCAGAAGTCTCTGGGGGACATTTTTCAGAATCAGTGGGGCTTGTCCTTTATCAACGAGCCTAGCGCCGGACCAGAAGGCGTGGCGTGCCGCTCGAACGGAAAGGACGTGCCGGTGGAGGTGAGCTTTCAGGGAGGCTGTCCTGCTACAGTGGCCACTCAGACTTCCAGTACCTCTCAGAGACCGGATCAACCACCCTTCCCCAAGGCTCATGAGCCAGAGAAACGGACTAACGCTCAGAATCTGAGTCGAGGTGCGAGCGGCGGTGCCACGGCGGCTAGCGGGGCCGTACCCGAGACCTCTGTCGTCAACCAGGATGCCCAGAGAGATGAGACGGGGGTTCATGGTGCAATAGTGTTTTGTTCTTCCTCTAAGGACATTTGTGCCGAGCTGCCTCCCACCTCCCCAGCTGCACCTAAGGTGGCTTTGGCCAAGGACCAGGGCCATACTAAGGGCTTTGACAGGAGGTCTAGTTGGGGGTCGTTTGATCTAAAAGCTGCTGTAATTTATCACACTAAAGaaatggaatatattttgaatttgcaaaaacaagATCCAAATCGAATAGTCCTCTACAGCGAGTCATGGGATGGACCTGCTCAGTGAAGCTGCGTCTGGACACTATATCTCAGATGAACTCTGCTGCAAAAAGATGTGCTTGAGGAACGTGGCTGCTGCCTCTGAACATCCCGAATCAGAACTAATCCAATGGTTTAGAAAGGACCTTGTTACCCGTCAGCAGTCAAGGCTGAGCGCAGAGGAACAGAGCGCGCTTGGGGAAAACGGGTTAGCTGGTTTTAGGATATTAGAATGGAAGAACGGGAGCTGTGGAACTCAACTCTAATGCGGATATGTTGCTGAAGACAATATCAATGACTTTGGGGACATACAACTCACACGTCAAACACTCATGATAACCGCTGTCATGACATTTGGTTGGGCGGGAAGCTTCTCCTTTAAGTACTCGCAGACCTAAAGAGAGCATCCAGGAGGAAAGCATGTCACCGCGTGTGCCCTCTTGAATTCAAATAATCATGTAGTGGTCACATTGAATTCATTTGGGCACAGAACCCGAAGAGAGTCGCTCTACGGTGAATTAACATACTGTGGCCAGAGGAACtacatggcttttttttttttttttttttttttgttttgtttagttttttttgtggagATTCAGGGGAATCGAACTCCACTTATGTGTGGGGGGCGGTTAGTTTCAAGCCTTTGGGATTAAATAATtgtcttaatttaatttctggACAAGATTGGGTCAGTGCTGTTAGTGACGCGTCtccactttgttttttttcttcttcttctttcttttttttttttttttttcattgaaatacTTAAAAACTCCCAGGGCAGGTACACTCGGATTGGGAAACCACACGCCCTGTAGTGTGCATGTTGCAGTATGCTGCTCTGTGCGTCCTCTTTTGGAAGAGTTCAAAGTGCTATCGTTCAATAGTCTTATTGTCGTCTCTTCACGCTTCTGTCACCTGACAGCCGTTTGAGTCTCTTGCTcgttgtgtgagtgtgtaaacTGAGGGCAGAGATCACGCTATACTCTTTTTATCTcgagtgtttttatgtttttaatttttaagtagcCGTTAGAACCCAGAACTAATCAATAAGACGTGCCACACCACAGAGTTGCTTTAGCTTCGATGCTATAGGTACATTATGGAGGCTTTAGTTAGCGTTGGTTAAGTTCTGCAGAGCTGCTCTTTGAAATagggttttggttttttttgcctGGAAAGGCAGTAGCGACTACTTTTGCTTTAGGACTACACCACATTTTAGAGGGAACCTAGAGAGCAGTCGCCGTGGCGAACGATCTGGACTTTTTATTTCACTCAAGAACTAGAAGCccctagtgtttttttttgtttgttttaattattattattattattattgagcaCCACAATCacacttttattctttttatttcttgtctGTTTTAATTTGTACCCGAGTTTCCATGCTTATCGGTTAAACGCTTGCTAAAGCACATATGAGCCTCATCAGTAGAACCGCCGTTGACAGGAATTCTGCCGTTGTgtaaatgtttctctttttaatgTCGGAAAACGCATTCTAAACTTACAGTCTGTCCTCTGTTTTATCATTTCACAGATTAATTGATTTATACATAAGAATCAGTAGCACTTTATGTATTATGTTCTTGAATTGTATTTCCTTAAACATTGACATATCAGTACATATTTGAAATTCTAGTAATTAATCATAGGCTACTAACTTTAACCTCTACCTAAGGACTGTCTGTCCGCAatctcaaaagaaaataaatataaacaaaagaaaataataaaaaaaaaaaaagcgaaaaaggaaagaaaataaaaaagacactCAGGTAGAATTAGGGCAGTGTTCTTctatctaacaaaaaaaaaatgcaccaaCAGTGTTATTGCCAAATATGAAAAGAACGTCCCATGTTTGTACCagctgttttttaaattgtaacctTTTGAGGGATTTAATTTTTGACTGAAAGCCAATGCTTGCATCTTTACACGTATCATTTGGCATTGATGTTTTCTGTACGTGACCATGAAACACTGCCAGGTGAAAAGATTTAAGTACACATGGAAGACGTTAACCACACTACGTATCTTTGTCGTTACTTTGCaagaggtttttttatttttttttttttttttaatgttttaaatgcagcatGTAATGGTTTCCAATGTGGTCTGTCTTCAGAAAACGTGGGATGTTTCATGATTGTTCTTAATCTGTTCTCGAGGTATCCGGCGTCTGTTCGATGTCTTGGTTCAAAAGATATTGCAGCTGTCGATGAAACGGATGTACGGTTGTTAAATTCTGCTTCATCTTTTCTAATTCCGTTTGGATTCCACTTAAAAGCTTTGTGCAATGTAGAGAAATCCATCGATTGATAATTAGCTCGTTCCTTGGCTTTTTAGGTGCACATCTCATCGTTGCTTCACTTGAGTTTTATTGTAGTTATCTAAATTCTGTCTTTAAACGACTCAcatagagctttttttttttttttttttttttgatatccAAGGGATTTGCTTAAGGAGTTACTGATGTAGGCATAATTTATAACCATCTGTTATTACATTAACTTAATTATGAAATACCTCTGTGAACATGCATTGTCCCGGTATCCCTATTCCCCCTTAAAGGGGTCTTTCACATCAAAATTAATatcctgtcatcattcactcaacctcacgtcattccaaacctgtgagaCTTACTGGCCCTATACCAACGTATAGTGAATGTCTTGTCTGTTCCGGACCCCAACTGACTTTGAAAAGCGGTTTAATCCGGTTGGGAATAAcgcgagggtgagtaaataacggCAGGATTCGGATTTTGGGTGAGCTGTCTCCTTTACTCAGTTACGTGTTTATAAACGCTGTCAGCAGAATGAACTGAACCTGGCCTTTGTTTCAAAAAAACTCAACTCCAGGGGTCAAATGCACATATAGAGGTTCTATGCACAGAATGCAAACAGAACAGAGTTTATATTTTGGGGGGGGTTGCACATTAGCTTAATTTCCTCAATTTAAATAAGCACTTACTACCCCACAAATGATATAATtgcaatataaattatttacataaatccTAAATAGCTCCCCTTAGTGTTTAAAGCAATGAGAGCACGTACGGATGGGAGAGAGGTACAGAGAGACTTAAATGGTGTGTTTGATTGCGAGGTCTGTACCGAGAGAAATGCATCTTTGTTGGCATATTCAAACTTCACGTGTTTTCTTGATGTATGAATGATACTTTGTCCTGTCCTGACAACTCAACTGGTTTTTCGCGTGTggatgcatatgtgtgtgttcgtgtgcaAGCATGTGTATTTGTCTTCATTCATACGCTCAATTATATGCAAAGTTAATATTGCGAACTTTTCAAGTTCAGGGTGCCTGTGTTAAGCGATATATTAAACGGAATCACATCAGAACATGAAAAACTCTTGCTTTTCCCCTGTCCCTACACCCCTATTATCCCCCAAACGATCTTCAGTTGTGCCATGTTTTGACTGTTAAAagtttgaattaatatttcattttatgtcgCTCCCACTGAATATCCTACGGTGGATATGAAGCGGGGGTTACATTATGTCTCAAGAATCTTTGTCACTGCTAATAAACTTGTTGAAAAAGA

Function

symbol description
nufip2 Predicted to enable RNA binding activity. Predicted to be active in cytoplasmic stress granule; nucleoplasm; and polysomal ribosome. Orthologous to human NUFIP2 (nuclear FMR1 interacting protein 2).

NR:

description
PREDICTED: nuclear fragile X mental retardation-interacting protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259059.1 True 5702 mRNA 0.45 4 16423297 16433885

Neighbor

gene id symbol gene type direction distance location
LOC122358452 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding upstream 174667 16244788 ~ 16248630 (+)
LOC122359064 LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107589737,LOC107756533 coding upstream 182941 16230809 ~ 16240356 (+)
zgc:153372 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding upstream 295654 16124547 ~ 16127643 (+)
nrip1a LOC107714172,LOC107587564,LOC107666194,LOC107682571,LOC107756533,LOC107589737 coding upstream 302731 16110508 ~ 16120566 (+)
gucy2f gucy2f,LOC107714181,LOC107666202,LOC107589733,LOC107682463,LOC106613073 coding upstream 427305 15986079 ~ 15995992 (+)
nlk2 nlk2,nlk,LOC106581270 coding downstream 9021 16442906 ~ 16508088 (+)
nos2b nos2,LOC107588374,LOC107666185,LOC107756441 coding downstream 80463 16514348 ~ 16525658 (+)
mrps23 LOC107746708,LOC107588353,LOC107666184 coding downstream 91840 16525725 ~ 16528161 (+)
LOC122359007 NA coding downstream 371539 16805424 ~ 16807691 (+)
omgb LOC107587445,LOC107672106,LOC107746657,LOC107592923,LOC107682744,LOC107756362 coding downstream 375352 16809237 ~ 16816847 (+)
LOC122358549 NA non-coding upstream 65675 16336814 ~ 16357622 (+)
G107232 NA non-coding upstream 78642 16344382 ~ 16344655 (+)
G107145 NA non-coding upstream 256292 16139813 ~ 16167005 (+)
G107141 NA non-coding upstream 353556 16069484 ~ 16069741 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding upstream 421166 16000215 ~ 16002131 (+)
LOC122358872 NA non-coding downstream 95395 16529280 ~ 16578656 (+)
LOC122359009 NA non-coding downstream 349194 16783079 ~ 16787674 (+)
G107305 NA non-coding downstream 424350 16858235 ~ 16859096 (+)
G107307 NA non-coding downstream 425819 16859704 ~ 16860627 (+)
G107308 NA non-coding downstream 426885 16860770 ~ 16860988 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 186956 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 380032 16004869 ~ 16043265 (+)
G107107 NA other upstream 539787 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 710858 15706513 ~ 15712439 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 1495072 14912911 ~ 14928225 (+)
lyrm9 lyrm9,LOC107756492 other downstream 79423 16513308 ~ 16514221 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1355960 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 1398187 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 1611132 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 2322458 18756343 ~ 18758836 (+)

Expression


Co-expression Network