trpc4b (trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445,LOC108433784)


Basic Information

Item Value
gene id trpc4b
gene name trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445,LOC108433784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18221272 ~ 18237305 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259084.1
TTACGTAATATAGCCTAACTACTAATTTGGTAATCGTTTTCACCATCATCCACGTCAGACCGGGGCTCATCTGAACTGGAACAACAGACGAGAAGAAATGCTAATACAATGCACTGTGGACAATGACAGACGTCTACTGGGGCGTAATGGATAATTGCAATTCCAGCATGATTACAGCGGTGCGTCGGTGCCGTGGCTGCACAACATCCGTGCGCAATCCTCATGTGGTCGTAGGAATAATcctcaaaaagtattttcgGTGATGAATCGGCGAAGTTGATCGCATCAGCTCTATACACGTGAGAATCAAAGTTGCTCCGACAGCAAGTCACGATGTCGCAGCTGTACTATCGCAGAAGCAACAATTCTTCGTACCGGGACCGCATTCCGCTGCGGATAGTGCGCGCCGAGGCGGAGCTCTCGGTGCAGGAGAAGTGCTACCTCAGCGCCGTGGAGAAGGGCGATTACGCCAGCGTCAAACTAGCGCTGGAAGAGGCGGAGATCTACTTCAAGATCAACATCAACTGCATCGATCCCCTGGGGCGCACCGCGCTGCTCATCGCCATCGAGAATGAGAACTTGGAGATCATTGAGCTGCTCCTCAGCTTTAACGTATATGTCGGGGATGCTCTGCTCCACGCCATCCGTAAAGAGGTGGTGGGAGCCGTGGAGCTCCTGCTGAACCACAAGAAGCCCAgcggagagaaacagGTACCACCCATCCTGCTCAATAAGCAGTTCTCAGACTTCACTCCTGACATCACTCCCATCATCCTGGCAGCCCACACCAACAACTACGAGATCATCAAGATGCTGGTTCAGAAAGGTGTTTCGGTCCCTCAGCCTCACGAGGTGCGCTGTAACTGTATGGAGTGTGTCTCCAGTTCGGATGTGGACAGCCTGCGGCACTCACGCTCCCGACTGAACATCTACAAGGCCCTGGCCAGCCCCTCTCTCATCGCCCTGTCCAGCGAGGATCCTTTCCTCACCGCCTTCCAGCTCAGCTGGGAGCTCCAGGAGCTCAGCAAAGTTGAAAACGAATTCAAGGCAGAATACGAGGAGCTCTCCCATCAGTGCAAACGCTTTGCGAAGAACCTCCTGGACCAAACCCGGTCCTCACGCGAACTGGAGCTGATCCTCAATTTCCGTGATGATGTAAACCTGCTGCAGGATGAGGCCAATAATGAGCTGGCTCGACTGAAGTTGGCCATCAAATACCGCCAAAAAGAGttTGTAGCTCAGCCAAATTGCCAGCAGCTGTTGGCCTCACGCTGGTATGATGAATTTCCTGGCTGGAGGAGACGTCACTGGGCTGGCAAGTTCATCACCTGCGTCTTCATCGGCCTCATGTTCCCCCTGCTCTCCCTCTGTTACCTGGTGGCACCTAAGAGCCGCTACGGCTTGTTCATTCGCAAGCCTTTCATCAAGTTTATCTGCCACACAGCCTCCTACCTGACCTTCCTCTTCCTGCTACTGCTAGCCTCTCAGCACATAGTCTCTAACAATCCCGATCGCCAGGGTCCAAAGCCCACCACAGTGGAGTGGATGATCCTACCCTGGGTTTTAGGATTCATATGGACAGAGATCAAGCAGATGTGGGATGGTGGATTTCAGGATTATATCCATGACTGGTGGAATCTGATGGACTTTGTGATGAATTCCTTGTATCTTGCAACCATATCCCTGAAGATTGTTGCATATTTTAAGTACAGTGGTTGTAAACCCAGGAACACCTGGGAAATGTGGCACCCCACACTAGTGGCTGAGGCAGTTTTCGCCATTGCCAACATCTTCAGCTCACTACGCCTTATCTCACTCTTCACAGCCAACTCTCACCTAGGTCCTTTGCAGATATCATTAGGACGGATGCTTCTGGACATCCTAAAGTTCCTCTTCATCTACTGCCTGGTGTTGCTTGCTTTTGCGAATGGACTCAACCAGCTTTACTTCTACTATGAGAGTAGCAATAGCACGGAATGCAAAGGCATCCGCTGTGAGCGTCAAAACAATGCCTTCTCTACGTTATTTGAGACCCTGCAATCGTTGTTTTGGTCCATTTTTGGGTTGATCAATCTGTATGTGACCAATGTCCAAGCTGACCACAAGTTTACAGAATTTGTGGGTGCCACCATGTTTGGTACATATAATATCATCTCTTTGGTGGTCCTTCTCAATATGCTCATTGCCATGATGAACAATTCCTATCAGCATATCGCTGACCATGCTGATATTGAGTGGAAATTTGCCAGAACTAAATTATGGATGAGTTATTTTGAGGAAGGAGGCACCTTGCCACCTCCCTTCAACATTATTACCAGTCCTAAATCCATATGTTACCTGATTACATGGATTAAAGTGCATGTGTTCAAGAGGAGGTCAAAGAAGACTGAGTCATTTGGGACGTTAGGGAGAAGAGCTGCTGAAAACGTGAGACTCAACCATCAATACCAGGAGGTCTTGAGAAACTTGGTAAAACGATATGTGGCGGCTATGATTCGAGACGCCAAGACTGAAGAGGGACTCACAGAGgaaaattttaaaGAGATGAAGCAGGATATCTCTAGCTTCCGCTACGAAGTCATCGGAATGATGAAAGGCAACCGGAAAAGTACTCATGCAAACAAGACGGCCACAGCGGCCTCCGATGATTCTCATCCAGACAGCTCACTTCAGTATTCCTCGGCTCTTCcgcagaaaaaaatacagcatttttacaatgtcacagcAGCGCTACAGcagcaaaaagctgaaaatacGAGGGAGTCTCTTGGCTGTGTGGCCAATGGATCGGCGGTAGTTTTAAATGACCTGATACTCAAAGACAAAGCCAGGAAGGATTTCACTAAGGATTTTACAGACTTTGGGTTATttccaaagaaacaaaacagccTCAACTCAAATAAGATCTACTCCCTCGCTGAAGAGGCAAAGGAATCAGATTCTGACATATTAGACTGGGTGAGAGAGGAAACGGCTGAGAAACCCTTGGCAAAAGAAGCTGAACAGGAAGAAAATGAATCAAAGTGCCTgatggaggaagaggaaagTGTGTTGGAGGACCAAGAGAAAGAGCACATTGCATCTTCGCATGAACTTTAGATACACAAAcactcattttttttgtatccaAGGATTATCTGAATCTCAAATGTAACTGACATGCTTTGTCAGGGATGAAACAGTTTCCTTTCTAATGCACAGAGGTGAGGTTTTGCAAGGCGAATTGTCTCAGGAAAAGGTATTTGCTTAGTTgctttttggctcagaaaaactCAGCATTACAGATGCCAAAAGCAACTATAAATCGGGAGGATAAGAAAAGAACGAAAAGCACTAGACAGTGTCCAACAGACCTGTTGAATagtgttattttctttttattattatctttttcttATGTATTTAACCTCAAGTTTTCACTGTGCAGCATCCTCTCATCCTTTTTTGAGAAAAGAGACAATCATGTTAACAATCATGTTTTCAATGACCAGAGAAAGCGTCTgatattattagtattactgcagggttttttttttaagaaataatatttctattttgaaaggatgcattaaattgagcaaaggtgacagtaaagacatcgataatttctataataaatcct

Function

symbol description
trpc4b Enables cation channel activity. Acts upstream of or within cation transport. Is spanning component of plasma membrane. Is expressed in integument; olfactory bulb; and olfactory placode. Orthologous to human TRPC4 (transient receptor potential cation channel subfamily C member 4).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: short transient receptor potential channel 4-like

GO: NA

KEGG:

id description
K04967 TRPC4; transient receptor potential cation channel subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259084.1 True 3622 mRNA 0.46 11 18221272 18237305

Neighbor

gene id symbol gene type direction distance location
LOC122358680 frem2b,LOC107752721,LOC107683412,LOC107730863,LOC107704782,LOC107582282,LOC108433801 coding upstream 181973 18037113 ~ 18039299 (+)
fhdc4 LOC107752494,LOC107704784,LOC107682937,LOC107559008,LOC107587915 coding upstream 433403 17778597 ~ 17787869 (+)
arfip2a arfip2a,LOC107587234,LOC107704786,LOC107559011,LOC107752500,LOC107682914 coding upstream 443719 17769204 ~ 17777553 (+)
dchs1a dchs1a,LOC107587256,LOC107558986,LOC107683408,LOC108433795,LOC108278281,LOC107704701 coding upstream 470905 17660921 ~ 17750367 (+)
brca2 brca2,LOC107752535 coding upstream 585448 17623734 ~ 17635824 (+)
postnb LOC107704781,LOC107752481,LOC107587216,LOC107730854,LOC107582252,LOC107682985 coding downstream 3344 18240649 ~ 18254051 (+)
spartb spg20,LOC107752446,LOC107683015,LOC107730857 coding downstream 32731 18270036 ~ 18283210 (+)
dclk1b LOC107752421,LOC107704780,LOC108433804,LOC107683036,LOC107730822,LOC107582281 coding downstream 47654 18284959 ~ 18317179 (+)
mab21l1 mab21l1,LOC107730834,LOC107683054,LOC107587182 coding downstream 151622 18388927 ~ 18396708 (+)
inpp5ka inpp5ka,LOC107704774,LOC107582245,LOC107683418,LOC107730810 coding downstream 475160 18712465 ~ 18720857 (+)
LOC122358481 LOC107575069,LOC107748074,LOC107682967 non-coding upstream 149040 18054268 ~ 18072232 (+)
LOC122358482 NA non-coding upstream 361468 17857907 ~ 17859804 (+)
G107547 NA non-coding upstream 404447 17816132 ~ 17816825 (+)
G107477 NA non-coding upstream 654396 17566193 ~ 17566876 (+)
G107468 NA non-coding upstream 741224 17479848 ~ 17480048 (+)
LOC122358786 NA non-coding downstream 205390 18442695 ~ 18443413 (+)
G107688 NA non-coding downstream 288300 18525605 ~ 18526233 (+)
G107689 NA non-coding downstream 296244 18533549 ~ 18534339 (+)
G107693 NA non-coding downstream 322175 18559480 ~ 18559755 (+)
G107713 pds5b,LOC107587120,LOC107582244,LOC107683122,LOC107730842,LOC107752691,LOC107704775 non-coding downstream 433025 18670330 ~ 18675897 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other upstream 104319 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other upstream 174368 18045017 ~ 18046904 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other upstream 410069 17789845 ~ 17811203 (+)
lyrm9 lyrm9,LOC107756492 other upstream 1707051 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1984931 16089757 ~ 16236341 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 519038 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 522277 18759582 ~ 18760497 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other downstream 556775 18794080 ~ 18795982 (+)
G107777 NA other downstream 604971 18842276 ~ 18843855 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other downstream 756040 18993345 ~ 18995991 (+)

Expression


Co-expression Network