LOC122359050 (LOC107672392,LOC107582610,LOC107758683,LOC107752375,LOC107694033,LOC107592755,LOC107672389,LOC107582609,LOC107758673)


Basic Information

Item Value
gene id LOC122359050
gene name LOC107672392,LOC107582610,LOC107758683,LOC107752375,LOC107694033,LOC107592755,LOC107672389,LOC107582609,LOC107758673
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9549682 ~ 9555407 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259166.1
acctggcaaccctgctcAATCTGACCAAACAGTCAGCTGTCCATCATTTGATCTTCGCGAGAGCAACAAGTAACATGGATCGCTGGAAAGGCAGGGTTGCTCTGGTCACCGGGGCTTCGGTGGGAATCGGGGCAGCTATCGCAAAGTCTCTTGTCCGGCACGGCATGAAGGTGGTCGGCTGTGCCAGGAACGTGGAGCAAATCCAGACATTGGCAGCAGAATGCGTGAGCAGCGGCTTCAGCGGCACTCTGATCCCGTATAAATGCGATCTGTCCGTAGAGGACGACGTGTTATCCATGTTCTCCTGGATCAAAGTTCATCATCAGGGCATTGACGTGTGCGTTAATAATGCCGGATTGGCTCTCCCGGAGCCTCTGTTGGGCGGAAAAACAAGTGCCTGGAGAACTATGATAGATgtgaacgtCATTGCCTTGTCGGTGTGCGCCCGCGAAGCTTACCAGTCCATGAAAGAAAACACTCACGACGGTCACATCATTAATATTAACGGTATGTGTGGACATCGTGTCCTCCGCAATGCTGATTTACACTTCTACACTGCCAGCAAATACGCGGTGACCGCTCTCACTGAGGGTCTTCGTCAAGAGTTACGAGAGGCCAAAAGCCACATACGTGCCACATCTATATCTCCTGGTTTAGTGGAAACGGAGCTATCCTACCGGCTCTTTAGTCAAAACCCAGAAAAGGCTGCTGCTGCTTATAAAAGCATGAAGTGCCTGCAAGCGGAGGACATCGCAAACGCGGTGGTGTATGTCCTGAGCGCTCCTCCTCACGTTCAGGTTGGCGACGTTCAGATGAGGCCTGTGGAGCAGCTGACGTGAACCGCGCGGAGAGACGGAGCGAAACATCTCTGACGTCTTTAAAGACGATTGTCGTAAAAAAGTTAGATTTGTCAAATggattttgaaatgcattttgtgaaaACACTAAACACTTCCGTTTCATCgcgatgattattattattatttttttttactgcgaTGCCTGAAATCATTTAATGTAGGCTACTGGTGTTAGACACAATGCTTGaggtttgtgtttaaaaagtgCCGACTATATCATAGAGAGCTGATACATgtccatattttaatgttaaagatATGGATAGAGGGATTTCCTCACCCTCAAattgctccaaacctgtatgtatttcttttggaagaatgttggtaaccaaacagttgccaCTGACCgtgcaagaacaaaaaaaagctaacactttatttccatAGTCTACTCTACACAGTGTCACAACAACAACAGGCTAGCAAACACATGTTGACTAGCGGTCATTAGAGTACTGGTAGACcctctgcttaatatcttctaacactttattttaatggcttCGCAACAtactatgagaaactttgcaagcaTATGTTAACTTACAcactaacctaaacctaactatCTAGTTAGTAAACATTAGATGCAAATGAATGAGGATTAGCTGACGTccagttacaaagttacttctAGTTAGAATGTCTGAGGTGGACTGCCGAGATAAAGtgtaacaacaaataaatttgTCACTTCAAATAAAATTCACTGCAAGAATGTCTAAACACGCAA
>XM_043259167.1
TTAAGCACGGTTTACTGAACTTTACCGGCACGCTGGAAAATGCGTAAGTAAAACTTAACAGCAAACTATGTGAGAAACGGCAACCATTTCTTGTGAAGGCAAACCGGCAAAAATCTTGGAGGAACGGGCAGGATTCAAGCGCGCTGCTCGGAAGAATCGGAAGTGCATCGCTATTGGCTAGATGAGTGTAAAGATCACCGCAACCTGCCCGCAGATGATCTGGGAGAGTTTCGTGAACTTGTAACATGGATCGCTGGAAAGGCAGGGTTGCTCTGGTCACCGGGGCTTCGGTGGGAATCGGGGCAGCTATCGCAAAGTCTCTTGTCCGGCACGGCATGAAGGTGGTCGGCTGTGCCAGGAACGTGGAGCAAATCCAGACATTGGCAGCAGAATGCGTGAGCAGCGGCTTCAGCGGCACTCTGATCCCGTATAAATGCGATCTGTCCGTAGAGGACGACGTGTTATCCATGTTCTCCTGGATCAAAGTTCATCATCAGGGCATTGACGTGTGCGTTAATAATGCCGGATTGGCTCTCCCGGAGCCTCTGTTGGGCGGAAAAACAAGTGCCTGGAGAACTATGATAGATgtgaacgtCATTGCCTTGTCGGTGTGCGCCCGCGAAGCTTACCAGTCCATGAAAGAAAACACTCACGACGGTCACATCATTAATATTAACGGTATGTGTGGACATCGTGTCCTCCGCAATGCTGATTTACACTTCTACACTGCCAGCAAATACGCGGTGACCGCTCTCACTGAGGGTCTTCGTCAAGAGTTACGAGAGGCCAAAAGCCACATACGTGCCACATCTATATCTCCTGGTTTAGTGGAAACGGAGCTATCCTACCGGCTCTTTAGTCAAAACCCAGAAAAGGCTGCTGCTGCTTATAAAAGCATGAAGTGCCTGCAAGCGGAGGACATCGCAAACGCGGTGGTGTATGTCCTGAGCGCTCCTCCTCACGTTCAGGTTGGCGACGTTCAGATGAGGCCTGTGGAGCAGCTGACGTGAACCGCGCGGAGAGACGGAGCGAAACATCTCTGACGTCTTTAAAGACGATTGTCGTAAAAAAGTTAGATTTGTCAAATggattttgaaatgcattttgtgaaaACACTAAACACTTCCGTTTCATCgcgatgattattattattatttttttttactgcgaTGCCTGAAATCATTTAATGTAGGCTACTGGTGTTAGACACAATGCTTGaggtttgtgtttaaaaagtgCCGACTATATCATAGAGAGCTGATACATgtccatattttaatgttaaagatATGGATAGAGGGATTTCCTCACCCTCAAattgctccaaacctgtatgtatttcttttggaagaatgttggtaaccaaacagttgccaCTGACCgtgcaagaacaaaaaaaagctaacactttatttccatAGTCTACTCTACACAGTGTCACAACAACAACAGGCTAGCAAACACATGTTGACTAGCGGTCATTAGAGTACTGGTAGACcctctgcttaatatcttctaacactttattttaatggcttCGCAACAtactatgagaaactttgcaagcaTATGTTAACTTACAcactaacctaaacctaactatCTAGTTAGTAAACATTAGATGCAAATGAATGAGGATTAGCTGACGTccagttacaaagttacttctAGTTAGAATGTCTGAGGTGGACTGCCGAGATAAAGtgtaacaacaaataaatttgTCACTTCAAATAAAATTCACTGCAAGAATGTCTAAACACGCAA

Function

NR:

description
PREDICTED: dehydrogenase/reductase SDR family member 11-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15890 FOHSDR; NADP+-dependent farnesol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259166.1 False 1596 mRNA 0.45 8 9549682 9555407
XM_043259167.1 True 1767 mRNA 0.45 7 9552678 9555407

Neighbor

gene id symbol gene type direction distance location
ca4b LOC107672388,LOC107758897,LOC107694023,LOC107752374,LOC107592803,LOC107578356 coding upstream 621 9545957 ~ 9549061 (+)
si:ch211-105f12.2 si:ch211-105f12.2,LOC107592752,LOC107582611,LOC107752380,LOC107758659,LOC107672390,LOC108410847,LOC107694022 coding upstream 9759 9537114 ~ 9539923 (+)
c2cd3 c2cd3,LOC107752384,LOC107694017,LOC107758810,LOC107577194 coding upstream 33824 9501435 ~ 9515858 (+)
med29 med29,LOC107752392,LOC107694027,LOC107592747,LOC107758885,LOC107672381 coding upstream 49032 9499090 ~ 9500650 (+)
si:ch211-149e23.4 LOC107758610,LOC107672406,LOC107582615 coding upstream 55630 9484603 ~ 9494052 (+)
LOC122359051 LOC107582609,LOC107672389,LOC107758673,LOC107694033,LOC107592755,LOC107672392,LOC107752375,LOC107582610 coding downstream 149 9555556 ~ 9558190 (+)
zgc:174895 zgc:174895,LOC107672400,LOC107657114,LOC107752376,LOC103023064,LOC105911024,LOC108443501,LOC108278204,LOC106612798 coding downstream 10897 9566304 ~ 9568508 (+)
trnat-agu_66 NA coding downstream 19102 9574509 ~ 9574582 (+)
trnar-ucu_52 NA coding downstream 19448 9574855 ~ 9574943 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107661116,LOC107592757,LOC107582647 coding downstream 22158 9577565 ~ 9587102 (+)
G105002 NA non-coding upstream 6480 9542366 ~ 9543202 (+)
G104974 NA non-coding upstream 157113 9392141 ~ 9392569 (+)
G104973 NA non-coding upstream 157829 9391457 ~ 9391853 (+)
G104937 NA non-coding upstream 299274 9249947 ~ 9250408 (+)
G104925 NA non-coding upstream 319495 9229959 ~ 9230187 (+)
G105101 NA non-coding downstream 142667 9698074 ~ 9698409 (+)
G105106 NA non-coding downstream 150801 9706208 ~ 9706530 (+)
G105112 NA non-coding downstream 178796 9734203 ~ 9738624 (+)
G105109 LOC107727913,LOC108415199,LOC107672419,LOC107582599,LOC107714247,LOC107661107,LOC108277446 non-coding downstream 208464 9763871 ~ 9803117 (+)
G105141 NA non-coding downstream 238341 9793748 ~ 9795843 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 25708 9515955 ~ 9523974 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other upstream 269213 9252508 ~ 9280469 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other upstream 788266 8756327 ~ 8761416 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other upstream 796864 8747803 ~ 8752818 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other upstream 915711 8628860 ~ 8633971 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other downstream 33382 9588789 ~ 9623972 (+)
G105011 NA other downstream 114227 9669634 ~ 9673345 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other downstream 148019 9703426 ~ 9715689 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other downstream 538048 10093455 ~ 10110443 (+)
G105248 NA other downstream 649432 10204839 ~ 10207452 (+)

Expression


Co-expression Network