mrm3a (LOC107716545,LOC107582598,LOC107672374)


Basic Information

Item Value
gene id mrm3a
gene name LOC107716545,LOC107582598,LOC107672374
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9844405 ~ 9847385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259174.1
CCGTGACGCAGGCGATGGGCGGCGAAGAAACATGGCGGCGCTCGTGTATAACGTGAGTCGAGGATTCGTTGTTTTCGGGGAACGTAGTTTATTACTCAGAGGGCATAATAACCACCGGATCTCGGTCAGTGCGAGGCGATATGTCCGAGGCCTCCGGCGGAGACCAGTGGCGGTCCTGTACCCTGATGGTGAACGAGAGAGATTAATTAGGTCCAACGAAGCAGCTGATAAAATGAACCGGAAGCTGTTCGCACAGAAGGACAGACACGGAGAGAAGGTCTCAGAGAGAGCTGGCAGCCGGCAGTGGAGCGGACATGTCTCTGAAGACACAGAAGAGTCTTCACTGATGAGGGACAAACTCGCTGGGCTCCGCTTCGAGAAAGCCCCCCCCGGAGACGACAGGCTCGCGAAGGTGGCCAGTGTCGCCCGGTCCAGAGCGCTTCAGGATAAGGAGGGTAAGGTGCTGCTGGAGGGCAGGCGTCTGATCTGTGACGCTCTGTCTGCCGGGGTGTCTCTTCAGACGCTCTTCTTCAGTGCGGTGGAACGACTGCACGAGCTTCCTCTGGATAAACTACAGCAGGCCAAGCTCATCAAGGTCAGGTATGAAGACATGAAGACCTGGTCTGACCTGGTCGCTCCTCAGGGTGTTATAGCTATATTCTCAAAACCGGATGCCTCCCGCCTggagtttccaaaagaaatgcgTCTTCAGTCAGTTCCTTTGTTTCTGTTATGCGACAATATACGTGACGCGGGGACCCTGGGGACTGTTTTACGCTGTGCTGCTGCCGCTGGCTGTGAGCGTGTTCTCCTGTCCAAAGgttgtgtGAACGCCTGGGGGCCCAAAGTTCTCCGAGCAGCAATGGGAGCTCACTTCCGCCTTCCGGTCTTTTCTAATTTAGACTGGGATGAAATTTCTGAGCACTTACCAGAGGACGTGGTGGTCCACGTAGCAGATGACGGCACACAAGCTCCAGGACAAACAGAAGAAGGTTTTTCAGACGATTCCAGTGACGAAGAGTCCGACGATGAGCTTTCGCTGGCAGGTCTGAAGCCTCGGGTGTACTGTGAGAGCTGGGCTCAGAGGAGCACGGCGCTGGTGATCGGCGGAGACTCGCACGGCCTGAGTCCGGAGGCTCTGCGACTGGCTGTGGAGACGGAGGGCAGGAGGCTCTTTGTGCCCGTAGCCCCGGGAGTGGAGAGCCTGAACTCTGCCATGGCTGCTAGTGTACTGCTGTTTGAAGGCAGACGGCAGCTTCTGCAGTTGTCGGACAAAACACGGCGAAAAACAAGATCTAAAATCTCTAAATGAGTGTTTTCCTTAAAGCATTAAAGATCTTTCACTTTA

Function

NR:

description
rRNA methyltransferase 3, mitochondrial

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0032259 methylation biological_process
GO:0008173 RNA methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259174.1 True 1348 mRNA 0.55 4 9844405 9847385

Neighbor

gene id symbol gene type direction distance location
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 147861 9679771 ~ 9696544 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107661116,LOC107592757,LOC107582647 coding upstream 257303 9577565 ~ 9587102 (+)
trnar-ucu_52 NA coding upstream 269462 9574855 ~ 9574943 (+)
trnat-agu_66 NA coding upstream 269823 9574509 ~ 9574582 (+)
zgc:174895 zgc:174895,LOC107672400,LOC107657114,LOC107752376,LOC103023064,LOC105911024,LOC108443501,LOC108278204,LOC106612798 coding upstream 275897 9566304 ~ 9568508 (+)
p2rx8 LOC107672369 coding downstream 64271 9911656 ~ 9917112 (+)
flot2b flot2b,LOC107661103,LOC107727921,LOC106581211,LOC105011286 coding downstream 79883 9927268 ~ 9935456 (+)
galnt17 wbscr17,LOC107714690,LOC107582595,LOC107727938,LOC107554251,LOC108411682 coding downstream 102008 9949393 ~ 9965676 (+)
gdpd1 gdpd1,LOC107672421,LOC107554273,LOC107659934 coding downstream 239292 10086677 ~ 10092950 (+)
clptm1 clptm1,LOC107727917,LOC107715057 coding downstream 331881 10179266 ~ 10187171 (+)
G105168 NA non-coding upstream 353 9843836 ~ 9844052 (+)
G105145 LOC107714397,LOC107672358 non-coding upstream 29015 9813991 ~ 9815390 (+)
G105109 LOC107727913,LOC108415199,LOC107672419,LOC107582599,LOC107714247,LOC107661107,LOC108277446 non-coding upstream 41288 9763871 ~ 9803117 (+)
G105141 NA non-coding upstream 48562 9793748 ~ 9795843 (+)
G105112 NA non-coding upstream 105781 9734203 ~ 9738624 (+)
G105225 NA non-coding downstream 282166 10129551 ~ 10131865 (+)
G105199 LOC107582590,LOC107715485,LOC107701431 non-coding downstream 302577 10149962 ~ 10169712 (+)
LOC122358545 NA non-coding downstream 324477 10171862 ~ 10177828 (+)
G105240 NA non-coding downstream 325922 10173307 ~ 10175622 (+)
G105242 NA non-coding downstream 330487 10177872 ~ 10178226 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 128716 9703426 ~ 9715689 (+)
G105011 NA other upstream 171060 9669634 ~ 9673345 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other upstream 220433 9588789 ~ 9623972 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other upstream 292277 9549752 ~ 9552128 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 320431 9515955 ~ 9523974 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other downstream 246070 10093455 ~ 10110443 (+)
G105248 NA other downstream 357454 10204839 ~ 10207452 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 505776 10353161 ~ 10390600 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 874587 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 1522863 11370248 ~ 11372691 (+)

Expression


Co-expression Network