traf4a (traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115)


Basic Information

Item Value
gene id traf4a
gene name traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9588789 ~ 9623972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259176.1
CCTAAACAGATGGGATCCGAGCTTTGTCTCCAGGCTGTCAGTGTTATTCTCGACAGGCGCCGCGAACGACTCTCATCGCGTTTCTCTTCGCCCCCGCTCACCGCCGCGTTGACAGCCTCGCGCCGCAGACGGACCGCCGGGTTTGAGCTGTCCCCCCGGTGCCGGATCGAGCCGTGTTGCTCGAAAGAGAGAGCCGAAACGGAACAATACCGACGGAGCTTGTGTGTCGTTGGCAAGTGAATATCATCTTTCGCGAAGGACTCTGTCACCGCGCCTCTGCGAGCGGTGGACAACGCACCACAGTTCCCATAGACGCGTACTGTAAACGCCAGCAATGCCGGGGTTTGACTACAAGTTCCTGGAGAAGCCCAAGAGACGCTTTCAGTGTCCTCTGTGCAGCAAAGCGATGAGGGAACCCGTCCAAGTTTCTACATGCGGACACCGATTCTGCGATACCTGCCTGCAGGAATTTCTCAGTGAGGGGGTCTTCAAATGCCCGGAGGACCAGCTCCCACTGGATTACGCCAAGATCTATCCTGACCCTGAGCTGGAGCAGCAGATACTGGCGCTGCCCATCCGCTGCATTCACAGTGAAGAGGGCTGCCGCTGGACCGGACAGATGAAACAGCTGCAGAGCCACTTTTCAACCTGCGCCTTCAATGTGATCCCCTGTCCTAACCGCTGCTCGGTCAAGCTGACCCGCAGAGACCTGCCCGAGCATCTGCAGCACGACTGCCCCAAACGCAAGGTCAAGTGCGAGTTCTGCGGGAGCGAGTTCACAGGAGAGGCCTATGAGAACCACCAGGGCATTTGTCCGCAGGAGAGCGTGTACTGCGAGAACAAGTGTGGAGCGAGAATGATGAGGAGACTGTTATCCCAGCACACCATGACCGAATGCCCCAAACGCACACAGCCCTGCAAGTACTGTGGCAAAGAGTTCGTCTACGACACCATCCAGAACCACCAGTACCACTGCCCTCGCTTTCCCGTGCAGTGTCCTAACCAGTGCGGCACCCCGAACATCGCACGTGAGGATCTGGCCAACCACGTGAAGGAGAGCTGCGGCAGCGCACTGGTCCTGTGCCCCTTCAAGGAGGCCGGCTGCAAACACAGATGCCCAAAGATGGCAATTGGACGACACCTGGAAGAGAGCACGAAGTCCCACCTGACCATGATGTGTAATCTGGTAGGACGGCAGCGGCAGGAAATCATGGAGTTGAGACGTGAAATGGAGGAGCTGTCTGTGAGTCACGACGGTGTGCTCATTTGGAAACTGACTGACTACTCGCGTAAACTGCAGGAGGCCAAACTGCGCAACAACCACGAGTTCTTCAGCCCGCCTTTTTACACGCACCGCTACGGCTACAAGCTCCAGGTGTCGGCCTTCCTGAACGGCAACGGCAGCGGCGAAGGCTCGCATCTGTCCATCTACATCCGCGTGCTGCCCGGCGAGTACGACAACCTGCTGGAGTGGCCCTTCTCCTACAAGGTCACCTTCTCCATCCTGGACCAGAGCGACCCGTCGCTGTCCAAACCTCAGCACATCACGGAGACCTTCAACCCTGATCCCAACTGGAAGAACTTCCAGAAACCGTGCAGCAGCCGAAACTCGCTGGACGAGAGCACGCTGGGCTTCGGCTACCCCAAGTTCATCTCGCACGAGGAGATCAAGAAGAGGAACTACATCCGCGACAACTCCATCTTTCTCAAAGCTTCCATAGAGATCCCGCAAAAAATAATGGCCTGAGGCCGTGTGAGTGACAATGTGTCTCGACGTACGTCTTTGTGGACCCTTTTTCCTGTCAGAAACTCTGCCGAAAGACTCAGAGCTCGTCTGTCTGGTTATTCGACTGGGACCCACGTAGAAGTGTTTTCGCAAAGTCATCACTTTCGGATTTGCTTTCTAACACTCTCTTCCTCGATCTACAGCAACGCCTTTGGACATTCAGTAGTGCCtagaacatttaatttaaatgttatttttgaagCGCGATTTTTACGTTCTTTCTCTCACAGATGTCAAGTTAAAGATGGAAGCCGACTGTGAAAGGCTATTCGTGAGCTTTGGATATTGAGAATGTTTTTCGGAGCTCTCTGGCATTCGGCGTACTACACACTAACCCTCTTTTACCCTTTCGTGTACCCGCTTTTGCCCGGCATCGGTCCGTGAAAAGGAACTTTCTTCCGGTTTAACTTGTTTTACGTAAACTAACGACAACGGCTGTGAACTAAATGTAGCTTAACTCGCTCTAGCGGTTCGAGACTTGTTAGGTGCATTGTAGTAGTTGATAAGTCAACATTAGGACCGATTCCGAGGTGCTAAAGCATTTTTGTTACTGTACGATGGAAAACGACACATTTTTGAAGCTCATGCACTCCGGGTTCGGATCGAAAGCCATGCGAGAGGTTGTTTACATTCAGTCTGTGAGGATCTACGACGCGGaccagtttttagttttttggtttttggtacTGTAACCTGTATTCTTAACCAGCGTGAGAGGGCTTGTTGCGTTACGACGGAGGGACGGACGAGCGAAAGgaaccaaatttttttttaatatgtgaaaaaaataaataaatgtgagcAAATTATTCGTGTCATAAACGAAGGGTGGTTTCGAATGTGAACTCTGGACTCGCATGCTCAGTCGATTCTTTCTGTTCTTGTCTTACTCTGGCAGATGATGAATAGAAAGGTGCGGGCATTCGCAACGGCCGCCCCAAAGTGCGTCGAGTGCGAGGGCGTCGTATTCGAGCGGCGCTGGTAGCCACGGTTGCCTGTGAACGAGAAGAGAGTTCTTCCATGTGCCTGAGGAAGATGAGCCTTGTGCAATATGGCTGCCATTGCTCCATACAGACTAGTGGAGGACTTTGTCGatacttattatatattatatgtgaatactaattaaaaaaaaaatgcaaaagcacattCTTCTTCACATTTAATCTCGCTACGATACCAGCTAATCTTTTGCAAGGATTTTCAGAAAacctggaaaaagaaaaaacaaaagacatttttttgctAAGATCCTGTATTTTACAAAGTACTTCAGATGTTTTCTACTACACTTTTTTGGCGAGGAGTTTCGGGGATACGTTGACGTTTTATGGACCCTTTTTATGTTTCTCCTCTGTGGCATTTGCTCggtcgttttgtttttgtctggttTGGATTTGGCATATTATGTCTGTATTATTTCCTCTTgagaagtatttattttaaagcgcCATGACATAAGCTTGACAGGAACTGgtgcagatgtttttttatatgttgaTTTGATGATTGCTTGTCGAATATcacttgaaataaaacaatgtctACAA
>XR_006252680.1
CCTAAACAGATGGGATCCGAGCTTTGTCTCCAGGCTGTCAGTGTTATTCTCGACAGGCGCCGCGAACGACTCTCATCGCGTTTCTCTTCGCCCCCGCTCACCGCCGCGTTGACAGCCTCGCGCCGCAGACGGACCGCCGGGTTTGAGCTGTCCCCCCGGTGCCGGATCGAGCCGTGTTGCTCGAAAGAGAGAGCCGAAACGGAACAATACCGACGGAGCTTGTGTGTCGTTGGCAAGTGAATATCATCTTTCGCGAAGGACTCTGTCACCGCGCCTCTGCGAGCGGTGGACAACGCACCACAGTTCCCATAGACGCGTACTGTAAACGCCAGCAATGCCGGGGTTTGACTACAAGTTCCTGGAGAAGCCCAAGAGACGCTTTCAGTGTCCTCTGTGCAGCAAAGCGATGAGGGAACCCGTCCAAGTTTCTACATGCGGACACCGATTCTGCGATACCTGCCTGCAGGAATTTCTCAGTGAGGGGGTCTTCAAATGCCCGGAGGACCAGCTCCCACTGGATTACGCCAAGATCTATCCTGACCCTGAGCTGGAGCAGCAGATACTGGCGCTGCCCATCCGCTGCATTCACAGTGAAGAGGGCTGCCGCTGGACCGGACAGATGAAACAGCTGCAGAGCCACTTTTCAACCTGCGCCTTCAATGTGATCCCCTGTCCTAACCGCTGCTCGGTCAAGCTGACCCGCAGAGACCTGCCCGAGCATCTGCAGCACGACTGCCCCAAACGCAAGGTCAAGTGCGAGTTCTGCGGGAGCGAGTTCACAGGAGAGGCCTATGAGAACCACCAGGGCATTTGTCCGCAGGAGAGCGTGTACTGCGAGAACAAGTGTGGAGCGAGAATGATGAGGAGACTGTTATCCCAGCACACCATGACCGAATGCCCCAAACGCACACAGCCCTGCAAGTACTGTGGCAAAGAGTTCGTCTACGACACCATCCAGAACCACCAGTACCACTGCCCTCGCTTTCCCGTGCAGTGTCCTAACCAGTGCGGCACCCCGAACATCGCACGTGAGGATCTGGCCAACCACGTGAAGGAGAGCTGCGGCAGCGCACTGGTCCTGTGCCCCTTCAAGGAGGCCGGCTGCAAACACAGATGCCCAAAGATGGCAATTGGACGACACCTGGAAGAGAGCACGAAGTCCCACCTGACCATGATGTGTAATCTGGTAGGACGGCAGCGGCAGGAAATCATGGAGTTGAGACGTGAAATGGAGGAGCTGTCTGTGAGTCACGACGGTGTGCTCATTTGGAAACTGACTGACTACTCGCGTAAACTGCAGGAGGCCAAACTGCGCAACAACCACGAGTTCTTCAGCCCGCCTTTTTACACGCACCGCTACGGCTACAAGCTCCAGGTGTCGGCCTTCCTGAACGGCAACGGCAGCGGCGAAGGCTCGCATCTGTCCATCTACATCCGCGTGCTGCCCGGCGAGTACGACAACCTGCTGGAGTGGCCCTTCTCCTACAAGGTCACCTTCTCCATCCTGGACCAGAGCGACCCGTCGCTGTCCAAACCTCAGCACATCACGGAGACCTTCAACCCTGATCCCAACTGGAAGAACTTCCAGAAACCGTGCAGCAGCCGAAACTCGCTGGACGAGAGCACGCTGGGCTTCGGCTACCCCAAGTTCATCTCGCACGAGGAGATCAAGAAGAGGAACTACATCCGCGACAACTCCATCTTTCTCAAAGCTTCCATAGAGATCCCGCAAAAAATAATGGCCTGAGGCCGTGTGAGTGACAATGTGTCTCGACGTACGTCTTTGTGGACCCTTTTTCCTGTCAGAAACTCTGCCGAAAGACTCAGAGCTCGTCTGTCTGGTTATTCGACTGGGACCCACGTAGAAGTGTTTTCGCAAAGTCATCACTTTCGGATTTGCTTTCTAACACTCTCTTCCTCGATCTACAGCAACGCCTTTGGACATTCAGTAGTGCCtagaacatttaatttaaatgttatttttgaagCGCGATTTTTACGTTCTTTCTCTCACAGATGTCAAGTTAAAGATGGAAGCCGACTGTGAAAGGCTATTCGTGAGCTTTGGATATTGAGAATGTTTTTCGGAGCTCTCTGGCATTCGGCGTACTACACACTAACCCTCTTTTACCCTTTCGTGTACCCGCTTTTGCCCGGCATCGGTCCGTGAAAAGGAACTTTCTTCCGGTTTAACTTGTTTTACGTAAACTAACGACAACGGCTGTGAACTAAATGTAGCTTAACTCGCTCTAGCGGTTCGAGACTTGTTAGGTGCATTGTAGTAGTTGATAAGTCAACATTAGGACCGATTCCGAGGTGCTAAAGCATTTTTGTTACTGTACGATGGAAAACGACACATTTTTGAAGCTCATGCACTCCGGGTTCGGATCGAAAGCCATGCGAGAGGTTGTTTACATTCAGTCTGTGAGGATCTACGACGCGGaccagtttttagttttttggtttttggtacTGTAACCTGTATTCTTAACCAGCGTGAGAGGGCTTGTTGCGTTACGACGGAGGGACGGACGAGCGAAAGgaaccaaatttttttttaatatgtgaaaaaaataaataaatATGATGAATAGAAAGGTGCGGGCATTCGCAACGGCCGCCCCAAAGTGCGTCGAGTGCGAGGGCGTCGTATTCGAGCGGCGCTGGTAGCCACGGTTGCCTGTGAACGAGAAGAGAGTTCTTCCATGTGCCTGAGGAAGATGAGCCTTGTGCAATATGGCTGCCATTGCTCCATACAGACTAGTGGAGGACTTTGTCGatacttattatatattatatgtgaatactaattaaaaaaaaaatgcaaaagcacattCTTCTTCACATTTAATCTCGCTACGATACCAGCTAATCTTTTGCAAGGATTTTCAGAAAacctggaaaaagaaaaaacaaaagacatttttttgctAAGATCCTGTATTTTACAAAGTACTTCAGATGTTTTCTACTACACTTTTTTGGCGAGGAGTTTCGGGGATACGTTGACGTTTTATGGACCCTTTTTATGTTTCTCCTCTGTGGCATTTGCTCggtcgttttgtttttgtctggttTGGATTTGGCATATTATGTCTGTATTATTTCCTCTTgagaagtatttattttaaagcgcCATGACATAAGCTTGACAGGAACTGgtgcagatgtttttttatatgttgaTTTGATGATTGCTTGTCGAATATcacttgaaataaaacaatgtctACAA

Function

symbol description
traf4a Predicted to enable tumor necrosis factor receptor binding activity and zinc ion binding activity. Acts upstream of or within establishment of epithelial cell apical/basal polarity; optic cup morphogenesis involved in camera-type eye development; and optic vesicle elongation. Predicted to be located in cytoplasm. Is expressed in several structures, including axial blood vessel; digestive system; immature eye; mesoderm; and nervous system. Orthologous to human TRAF4 (TNF receptor associated factor 4).
traf4 Enables several functions, including WW domain binding activity; enzyme binding activity; and tumor necrosis factor receptor binding activity. Involved in positive regulation of JNK cascade and positive regulation of protein kinase activity. Located in cytosol; fibrillar center; and nucleoplasm.

NR:

description
PREDICTED: TNF receptor-associated factor 4

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007165 signal transduction biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09848 TRAF4; TNF receptor-associated factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259176.1 True 3336 mRNA 0.50 7 9588789 9623972
XR_006252680.1 False 3235 transcript 0.50 8 9588789 9623972

Neighbor

gene id symbol gene type direction distance location
nek8 nek8,LOC107672375,LOC107758702,LOC107661116,LOC107592757,LOC107582647 coding upstream 1687 9577565 ~ 9587102 (+)
trnar-ucu_52 NA coding upstream 13846 9574855 ~ 9574943 (+)
trnat-agu_66 NA coding upstream 14207 9574509 ~ 9574582 (+)
zgc:174895 zgc:174895,LOC107672400,LOC107657114,LOC107752376,LOC103023064,LOC105911024,LOC108443501,LOC108278204,LOC106612798 coding upstream 20281 9566304 ~ 9568508 (+)
LOC122359051 LOC107582609,LOC107672389,LOC107758673,LOC107694033,LOC107592755,LOC107672392,LOC107752375,LOC107582610 coding upstream 30599 9555556 ~ 9558190 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding downstream 55799 9679771 ~ 9696544 (+)
mrm3a LOC107716545,LOC107582598,LOC107672374 coding downstream 220433 9844405 ~ 9847385 (+)
p2rx8 LOC107672369 coding downstream 287684 9911656 ~ 9917112 (+)
flot2b flot2b,LOC107661103,LOC107727921,LOC106581211,LOC105011286 coding downstream 303296 9927268 ~ 9935456 (+)
galnt17 wbscr17,LOC107714690,LOC107582595,LOC107727938,LOC107554251,LOC108411682 coding downstream 325421 9949393 ~ 9965676 (+)
G105002 NA non-coding upstream 45587 9542366 ~ 9543202 (+)
G104974 NA non-coding upstream 196220 9392141 ~ 9392569 (+)
G104973 NA non-coding upstream 196936 9391457 ~ 9391853 (+)
G104937 NA non-coding upstream 338381 9249947 ~ 9250408 (+)
G104925 NA non-coding upstream 358602 9229959 ~ 9230187 (+)
G105101 NA non-coding downstream 74102 9698074 ~ 9698409 (+)
G105106 NA non-coding downstream 82236 9706208 ~ 9706530 (+)
G105112 NA non-coding downstream 110231 9734203 ~ 9738624 (+)
G105109 LOC107727913,LOC108415199,LOC107672419,LOC107582599,LOC107714247,LOC107661107,LOC108277446 non-coding downstream 139899 9763871 ~ 9803117 (+)
G105141 NA non-coding downstream 169776 9793748 ~ 9795843 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other upstream 36661 9549752 ~ 9552128 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 64815 9515955 ~ 9523974 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other upstream 308320 9252508 ~ 9280469 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other upstream 827373 8756327 ~ 8761416 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other upstream 835971 8747803 ~ 8752818 (+)
G105011 NA other downstream 45662 9669634 ~ 9673345 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other downstream 79454 9703426 ~ 9715689 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other downstream 469483 10093455 ~ 10110443 (+)
G105248 NA other downstream 580867 10204839 ~ 10207452 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 729189 10353161 ~ 10390600 (+)

Expression


Co-expression Network