pak4 (pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790)


Basic Information

Item Value
gene id pak4
gene name pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13962453 ~ 13975188 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259197.1
CGACGGTCAGTTCCCGGATGAAGGCTGATCGTGAATATGGCGCAGAGAGCACGAGCAGCGCGCTCGTGAGGTTTCTGTGACTGATATACGCGCACTTAGCCAGCTTAAGCTAACTTTACACACAAGAAACTTCACCGACTCTATGAAGTTTATTTCTCCGCGGACACACTTCTCACTACAGGTCTGATGCTTTGCTGCAGCCATGTTCAGCAAGAAGAAGAAGTCACGCATCCAGATCTCGGCCCCCTCGAACTTTGAGCATCGCGTTCACACTGATTTTGATGAGCAGGAGCAGAAGTTTGTGGGGCTTCCTCGCCAATGGCAGAGCCTCATTGAGGACACAGCCAAGAGGCCCAAACCTTTCATCGATGCCACTGTCATCACTACTGTAGAGCCACGCAAGGCCATTGTACGGGGTCGTAAGATCGGTGATGATGGCTCTCTCACATGGCTTCTGGATGAGTTTGAGACCATGTCGGTGATCCGCTCAAACTCCCTCCGGAGAGGAAGCCCACCACTTCAACCCCGGCGAGACTCTGGATCATCAGGAGGGGGCCATGAGAATGGGGAACACCCTCAATACAGACACCATGATCGATACGGAGACAGCAAAGAGAGGGAGAAACCGCATCAGGAGCATCCAGGTTCTGATCCCAGACAATCTCAGCGCCCATCCCGTTCATCCAGAGAGGATGGCCGACCTCACCAGCAGCCTCGTGGTCAGGAGCCCAGCAGACACAAAGAGCCTGACTGGACAGGAGGCACAGCCCCACAGCCCCAGCCCAGAGAACGAGACCGAGAGCCTCGTGATTATCATGATCAGGTGGTGAGGCGAGAGGGGGCCAATGATAAGAGGCCCAAATCTAGCTACACTGGAAGGGACAGCAGCCCTCAGTCACCCCGTGAGAAGAGACCACTGTCTGGGCCAAATATCCGCACCCCTAACCTACCTGTTACAGAAGGAGTGATAAAAAACGCACAGCAGACCGGACGACCTTTCAACACATACCCTCGAGCAGAAAGTGACTCTGGGAGGAGCCCCAGCGGTCAGGATTTAAAACCAGGAAAATCTCATGACCCTTCCCACCACAACGGCCCCTCTACTGGGGCAGTCCGGAGCGTAAACAGCGGCAGTAAAAGTACTACTCAAGGGCAGCACAGAGCAGAGCCCCAGCATCACGCTTCCCACCCAGCCTTAGGCCCCGAGCCCCCCCACAGCCAGCAGTTGCCTCCTGCACCAAAACCTTCAGGCCAGGCTGCACCGCCTCAGCAGACACGCTCACCTCAGAGGGAGCCGCAGCGAGTCTCCCACGAGCAGTTCCGTGCTGCCCTGCAGATGGTGGTTGACCCTGGAGACCCACGCACGTATTTGGACCACTACATCAAGATCGGGGAAGGTTCCACCGGCATCGTTTGTATTGCTACTGTGAAGACCACAGGCAAGTTGGTGGCTGTGAAAAAGATGGATCTGCGAAAACAGCAGCGACGAGAATTGCTGTTTAATGAGGTGGTGATCATGCGGGACTATCACCATGAGAACGTGGTAGAGATGTACAACAGTTACTTAGTAGGCGATGAACTCTGGGTTGTTATGGAGTTCCTTGAGGGTGGAGCTTTGACTGACATAGTCACACACACCAGgATGAATGAGGAGCAGATTGCCACCGTATGTCTGTCGGTTCTGAAAGCTCTCTCTGTCCTTCACTCCCAGGGAGTCATTCACAGAGACATTAAGAGTGACTCTATTCTTCTCACCCATGATGGCAGGGTGAAGCTGTCAGACTTTGGCTTTTGCGCCCAGGTCTCAAAAGAGGTGCAGCGCAGGAAGTCTCTTGTTGGAACTCCCTATTGGATGGCTCCTGAGCTCATCTCAAGACTCCCATACGGACCAGAGGTGGATATTTGGTCACTTGGCATAATGGTCATTGAAATGGTGGATGGAGAGCCGCCATATTTCAACGAGCCACCGCTCAAGGCCATGAAGATGATCCGGGACAATTTGCCACCCAAGCTTAAAAACCTCCACAAGGTCTCGCCACTTCTAAAGGGTTTTTTGGACAGGATGCTCGTACGAGATCCTGCCCAGAGGGCCACAGCTCAAGAGCTGCTAAAGCATCCCTTCCTGAGTAAAGCGGGCCCTCCCTCTTGCATTGTTCCCCTCATGAGACAAAACCGCATGAGATGAGAAGAGAAATCGGTGCGGGATCTTTTAGGCCCTCTGAGCTCAAAGCAAAGACCCAAATGCAAAGATGGAGTCCGTACTCTGCACAGTTTAAACATCTGAAATGATTGTACAGGTCAAGACTTTTAGGAGGAAAGGCCATTGATGCTATGGACATTAAgagggtttttttccccccaaacaTTTTTACCACTGTTTTTATTACACTAGAATACATCAAATTTGGTGACACGAAATAGACATGATTAGATCCTTCACAGTGTTCTGCTATAAGAGGTTTCCCTCTCTGGCTAATTCAGAAACACAGGAACGTGTGTCCTCTGTGGTTTCACGTCTGACCTCTAAGATTGTGCTTTTGATTGAACTGAGTTAAGGAGGTTTagacatttatgaaaatgaaccACTAGGAGATTCTAATCTGCCCTCAATGTAAAGCAACAATTTTATGGATTTGTTCCAAACCtcaagctttttttcccctgcactTCATCTTTTGCACCATGACCACACTACTCATTAATCCATTTTTAACAGGGAAAACAACTACTGAAGAAAAccttttacttaaaaaatgaaaCTCTAGGCTCCTGTTACAACACTAAGCAATGGTAAACACTGGAGGCtttactttttgttcatttttttccagaccgtttttaattttgttttaatgaaagtaGAGCGTTATATTGGTTTTCATATTGCATTTTGAGTGACAGTGTGATTGTTTTAAACACTGTTCTGAGATTAAGCTGCACTCGAATATGCAACTTCCTCCTTTGATTCattgttccattttttttttcttatataataaAGGGGGAAGGGTTGGATGTagggtggttttttttttttttttttttttgttagttttttttttcacaaaacttTCACCACGGCGCCACGCCACATTAGCTGAAGAGGCCGAGTTGTTTTCAATGTAGGGCAGCCTGTCCTTTCATGTGCACCCAAATCCTCCAGCTAAGAAGCTTACATCTTTGAAGTATCGTGGCCTTTCTCCGACGGATTCATTGTGGTTGATTTTTGTCTGAGAGATGTTGAACTATACGAATGTATAGGTGAGCGTTACATATGCTCTACTTTGAGAGCTTATTCAAAGGAGGTGGACCATATAGATACAGATCGAGATTGATCccacacatttaaatgtaggCCATAGTAGTCATGTAATTGGTCATGTAAACTACAATGTTTTGATATAAGAGCAACATGACATTCAAGGAATAAGAGAGGAGTAGTGGAACAACCAAAGACTGTTTGAAATACTGAAggttaataatactaattagtCCGAGTACACTACATCACTTTAAAGGAGTGTTTACCCAGATTGGAAAATTCTGTTACCATTTATTAACCCTCATTACCTGTGTAGCGTCCTTTCTTCTTAGTGTTGTTTTGGCCCTTTTTAAAAAGGGCATCATGTTGCACAGAAGTCATATAGGTCTGACACggcacaagggtgagtaaatattggcagaattttatattttgggttAACTGTCCTTTGTAAGACTTTATCTTTCCTTGCTCAGTCACAAAGATCCAGGACCAAAGTGGATGgggaaaactgaaaaatatatgaaaaaaaaggccatttaaaaattaatcgGATACGTGTAGTGACTCTAAATGTGAATACTAGCTGATCATTAATGAGAGTTGATACACGTTTGTGAGAAGATCGAGGTCATTTACATTCGGTAATTTACAAAACGTTTGAAGATGAATTGTAGAGATTAATGCTAGACTGAAACGGTAGCTTATGTgtttctaaaagttgttttcttttgctgAGAGCCTAAACATAACTCTAATTGTAGATGTGAAGGTTTGAGAAAATTAATGACCATTATTGACAGAcgttattaatataaaaatactactagaatttgtttgtttgttttttccaccagtaaaagttttttttgtttgttttttatgcatACTGGAATTGTTACTTTTTCAGGaggtgaaacaaaaataatgacaatcAGGCATTGGAAGAAAGCatgtacacacatttaaatgtatattcagagatgaataaataatgcagttgACAGGATAAAGTTTATAGGTATTGTATAGTTGTTTGACCTCCTCAGTGCACTGAAACAACAGATGAGGTTAGCATtcatacaaacagaaaaaaaacgcCTTTATGCATCTTTGATGCAGAACTGAAACTGAACACACTCTCCACAGTATGCCACTTGATTTGTGACCAGCCACACATTTAAATTCATCTGCTAATGTTTAATGATTATTGGCTGTTTATAAAGAGGATACCACAAGCCTTATTTGGGGTGAATGGATGAGAGAAAATTGCCTAATGCATCACTTTCTCAAAAGACTGGTCCGCTGAACGTGTTGAATAGCTTTCAGAAACTGCTTCTCTATTTTCTGAATTGCATTCCCAGGGCCGATCAGAGCATGATCTTTCATGTGGTAAGATAATGATCTGCTTTTCTGTGTTCTGTTTCCAATTTTGTTCCTCATGTGGTGCTCACAAACAGTACTGCAAATGCTCTCTGGAAGGGtacattgtattataatatgGCTTTCACTTTTCTCATTTAGTCTGTGTTTCAGATTGTCACTGCATTAAATCCTAATGGATTGCCCACATTCTGCTGTTGACATATTTTAAGCCTAATAGGTTTCTGATTAATCTTGCactgtatttttcaaaaaatgttcttttcttcaTCATGTAGATAGTTTTAAAGAAACTTGATCTTTGTGCATGATCTTGATGTTCCCTCATATCTGACAGACCCGTTTAGACTGACAGACTAatcatcttttatatatatatatatctcatcttcaacatctttttatttctaagtattgtcatttttgatgCACAGCCGTTGGAGTTCCCTCTAAAATATGTGAATTTTTACTGGTGGTAAAATGGactttaaactgattttttttttttttccaaatacagtttttaaaa

Function

symbol description
pak4 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within embryonic morphogenesis and myeloid leukocyte differentiation. Predicted to be active in cytoplasm. Is expressed in post-vent region. Orthologous to human PAK4 (p21 (RAC1) activated kinase 4).

NR:

description
PREDICTED: serine/threonine-protein kinase PAK 4-like isoform X2

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0000910 cytokinesis biological_process
GO:0002573 myeloid leukocyte differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K05734 PAK4; p21-activated kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259197.1 True 5174 mRNA 0.43 10 13962453 13975188

Neighbor

gene id symbol gene type direction distance location
LOC122358866 cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 coding upstream 165608 13775064 ~ 13796845 (+)
LOC122359191 LOC107709114,LOC107677520,LOC107586244 coding upstream 206361 13752142 ~ 13756092 (+)
LOC122358500 LOC107718289 coding upstream 295042 13604091 ~ 13667411 (+)
LOC122358501 LOC107690467,LOC107743726,LOC107585604,LOC107664918,LOC107718289 coding upstream 368774 13577002 ~ 13593679 (+)
si:ch1073-145m9.1 si:ch1073-145m9.1,LOC107592629,LOC107690475,LOC107718303,LOC107743751 coding upstream 397731 13560833 ~ 13564722 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding downstream 1656 13976844 ~ 13981992 (+)
npat LOC107743659,LOC107664943,LOC107585592,LOC107744791,LOC107685055,LOC107592638 coding downstream 20538 13995726 ~ 14003601 (+)
tsr1 tsr1,LOC107743656,LOC107585596,LOC107685058,LOC107592627,LOC107744794,LOC107664951 coding downstream 68550 14043738 ~ 14053249 (+)
hic1 LOC107743655,LOC107664949,LOC107585597,LOC107685059,LOC107744795 coding downstream 91178 14066366 ~ 14078109 (+)
rtn4rl1b LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107685061,LOC107592642 coding downstream 349445 14324633 ~ 14456594 (+)
G106249 LOC107585585,LOC107743723,LOC107685050,LOC107664929 non-coding upstream 46768 13915241 ~ 13915685 (+)
G106385 NA non-coding upstream 48663 13913579 ~ 13913790 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding upstream 78372 13882121 ~ 13884081 (+)
G106370 NA non-coding upstream 151354 13799301 ~ 13811099 (+)
G106234 NA non-coding upstream 164205 13258236 ~ 13798248 (+)
G106603 NA non-coding downstream 106863 14082051 ~ 14083858 (+)
G106614 NA non-coding downstream 191205 14166393 ~ 14166613 (+)
LOC122359060 NA non-coding downstream 191796 14166984 ~ 14178264 (+)
G106648 NA non-coding downstream 280663 14255851 ~ 14256663 (+)
G106678 wdr81,LOC107664921,LOC107743652,LOC107685063,LOC107744800,LOC107562947 non-coding downstream 556029 14531217 ~ 14531538 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 646 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 45191 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 1113786 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1864807 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1931904 12027555 ~ 12030549 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 937723 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 1731325 15706513 ~ 15712439 (+)
G107107 NA other downstream 1905926 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 2029681 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 2114569 16089757 ~ 16236341 (+)

Expression


Co-expression Network