dixdc1a (dixdc1a,dixdc1,LOC107713457,LOC107701411,LOC107699911,LOC107717189)


Basic Information

Item Value
gene id dixdc1a
gene name dixdc1a,dixdc1,LOC107713457,LOC107701411,LOC107699911,LOC107717189
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10663810 ~ 10672600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259270.1
GGGGGAAGACGAGGAGCGAAGAGAAACAGAAGGGCAGAGAAAAAATACCTTAAAACTGCCTCGACAGAGACACAAAAACTAGGAGAATGAGAAACAGGAGCCGCAGAAGATGTTGTAGAGATTCGAGAAGGGGGACGGGAGACCATTCAAAAGCTCTTTTCTTCCCTGTTGTGGCTCAGAACTGAAAACAGGATTACCTCATGCTTCTTATCACAGAAACACATGCTGCCTCTGATCGGGATTTTCAACGTTGAGTCTGTGGGAATACCCATTTAATCTGGGTTTACAGCGCTGTCCAAAGGAAGACCTGCCAAACAAGTAGGTTGGGTTCAAGCGGACGGAGAGATCTGTTCTCCGTCATCATCATCTCCAGCAGACTGGACTGGCAGCTACGTGGACGCTGGGATCTCTGATGCGCACACCCTTTGGACCGGCGCTGGGCCGTCTGCTATGTTGATGACACACCGCTGCTTCCTCGAACCCTTCGGGTTGGGCTGGATCAGGATGGGAGGTTAAAAGGGCAAATAGCATCATGGGAGCCAAACAAATGAAATGTCTCAGTTCGTCCAGTCCAGCACACACACCCAAGGAGGAGTATATTATTGCCAAATCTGAAGATTCAGGAGAGCTAGTGGGAAACCACACGGAGCAACCACAAAGCCTAGagGATGTAGTGAAATCTTTAGCCACCGAGCCATCTCCTGGCCCTGAGCATGCTGGGAAAGAGGAAAGCAGCACATGGGAGGAACAGCTATGTGCCCAGCAGGAACAGCTGGAGAAGGAGATGCAGGAGACCAGGAAAATGGTAACAAGGCTTCAGGCCTTACTGCTGCATGGGTCTCTACCTGAGGACGAGCAGACATCTACTCTGAGCTTTGGAGACAGTACCAGCTCAGAACAGCAGCTGATTTTAACCCGCAGTCGTCTGGACCAGAGTATGGAGGAGTCTTTAGATCTGAAGagagAACTTTTAAGATACAAACAGGAAGCACGTAATCTGCAGGCTATTAAGGATGCCTTGCAGCAGAGGATGTCTGTGCAGGAAGACTCGGTGCTGCAGCTCAAACAGGAGCTGCTCAGATCCAGCATGGACAGAGAGGAGCTGGAAGGACAGAATgTGGAACTAGAAAGGAAGCTGAGCGAAAGAAACAGATTGCTGAGTGAATACAAAAAAGAACTCGGGCAGAAAGACAGACttcttcagcagcagcagtcaAAACTGGATGATGCACTGCGCAGGATCAGTGAAAGCTATCACAGGCTGTCAGGCTGTGAGAATAATGGCTACAGTCACATGATGGATACATCGTCCGCCGTTTTCCAACACAGAATGGGGGACGAGCTACAGCTTGTGCGGGACGCTCTGCGCAGTCTGAGGGACAGTTTCAGCGGACATGACCCACAGCACCACACACTGGACACACTGGAGCAGGGGGTGGCCAGTCTGGTGGACCGTCTCCACACCACAGAGAACAAGAAAAGGCAGGAGAGGAAGGGTTCAAGCAGGTCTCCCGGACGAAAAGCCAATCACACAGACCGAGAATCATGGCCGTCAAGCTCAAagataGCTCACTCCCACAGCAGCCCTGTTCTCAGTGCAGCAGCCTCAACCAAAGTACTCTACTACACAGATCGCTCTCTCACACCCTTCCTAGTCAACATCCCTAAGAGGCTGGGGGAGGTTACGCTACAGGACTTCAAAGCGGCTGTGGACAGACATGGCAGTTTTAGATATCACTTTAAATCTCTGGATCCAGAGTTTGGGACGGTGAAGGAAGAGGTGTTTCAGGACAATGCTGTTATTCCAGGATGGGAAGGGAAGATCGTCGCTTGGGTGGAGGAGGATCACGGAGAGGGGAGATAGAGACTGAGGGTTTCAATCTATTCAGAATGTATGTTTTACCCTACATATACCTCATCCCTGCAAACTCTGAAGCCTTTGTCCTGTCCTAACTGTGAATCTCACTGAACCAGTTCACTATGTCATTACAGCAGGCACGTGTTTGTAATATTGCGTATATGCATTTTGAAGAATGAAagaagaatgtttttaaatgttatcaaAAATGGTTTACAGCTAAATGCAGATTATGTTTTTGAGTGTATTGAGGTTACGGTACATTTTGTTTCGAAAAAGCTAGTATATCGGCAATGCCATTGTGATAAGTGACCACGAAAAgaagattatttaaaacagtatgTGTTTTGTGCAGTGACAAATAATAAAGATGTTGCGTTAGTTGCCAAACTCCGACAAGCATATCACACACTGTGTGCATGTATtgtcatgccaaaaaaaaaaaatccattttaagGGAATCATAAAAAATGTCTGCACAGtcacagtaatatatttttcactaaAATGTACGTCAACCTTTCTTGACTCTCCTTTGAAAATAAGGGGTGGTAAAAGCAGGGACCactttgtttgtaaaaattTGTAACATTTGAACATATTGAAATATTCCTTTTGAAAATGATTGTACTTTTCCTATCAAGCTTGCATGTCTGTTCGTAGTGTTTGGTATCTGTGTTGTAAAAGCAAATGCAGTTGACACTTGTCCACCTTTTATTAAAGGCTTTCCGTGCACA

Function

symbol description
dixdc1a Enables identical protein binding activity. Acts upstream of or within camera-type eye development; canonical Wnt signaling pathway; and forebrain development. Predicted to be located in cytoplasm and focal adhesion. Predicted to be active in cytosol. Orthologous to human DIXDC1 (DIX domain containing 1).
dixdc1 Enables gamma-tubulin binding activity. Involved in canonical Wnt signaling pathway. Located in cytosol.

NR:

description
PREDICTED: dixin-A-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0021695 cerebellar cortex development biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0043025 neuronal cell body cellular_component
GO:0043679 axon terminus cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005938 cell cortex cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031435 mitogen-activated protein kinase kinase kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259270.1 True 2595 mRNA 0.46 15 10663810 10672600

Neighbor

gene id symbol gene type direction distance location
LOC122359094 LOC107713423,LOC107701398,LOC107597513,LOC107659919,LOC107717187 coding upstream 83129 10564489 ~ 10580681 (+)
LOC122358614 LOC107713423,LOC107701398,LOC107659919,LOC107597513,LOC107717187,LOC107676612 coding upstream 105632 10544727 ~ 10558178 (+)
LOC122359095 LOC107713423,LOC107701398,LOC107659919,LOC107717187,LOC107597513,LOC107582627 coding upstream 124747 10521693 ~ 10539063 (+)
LOC122358985 LOC107701419,LOC107713466,LOC107728785,LOC107597592,LOC100001991,LOC107582628 coding upstream 222512 10431565 ~ 10441298 (+)
rps6kb1b rps6kb1b,rps6kb1,LOC107701421,LOC107597508,LOC107659922,LOC108443350 coding upstream 313504 10343436 ~ 10350306 (+)
cadm1b cadm1b,LOC107713448,LOC107582575,LOC107662762,LOC107699904,LOC107748594,LOC108435304 coding downstream 209934 10882534 ~ 11028778 (+)
LOC122359106 LOC107582581,LOC107713463,LOC107701416,LOC107597512,LOC107717185,LOC107659920 coding downstream 462753 11135353 ~ 11138624 (+)
LOC122359111 pou2af1,LOC107582583,LOC107717181,LOC107713464,LOC107597594 coding downstream 489484 11162084 ~ 11172203 (+)
LOC122358387 LOC107717180,LOC107597510,LOC107713465,LOC107582585 coding downstream 582723 11255323 ~ 11259381 (+)
LOC122358473 LOC107701401,LOC107713429,LOC107582582,LOC107659936,LOC107717183 coding downstream 618753 11291353 ~ 11297720 (+)
G105485 NA non-coding upstream 58344 10600778 ~ 10605466 (+)
G105471 NA non-coding upstream 78892 10512389 ~ 10584918 (+)
G105469 NA non-coding upstream 156017 10506991 ~ 10507793 (+)
G105458 NA non-coding upstream 198911 10464202 ~ 10464899 (+)
G105416 NA non-coding upstream 258477 10405019 ~ 10405333 (+)
G105517 pih1d2,LOC107701408,LOC107577555,LOC107597596,LOC107699912 non-coding downstream 165 10672765 ~ 10675515 (+)
G105525 si:ch211-247l8.8,LOC107597517,LOC108413672,LOC108441967,LOC108413998 non-coding downstream 14744 10687344 ~ 10692785 (+)
G105526 si:ch211-247l8.8,LOC107597517,LOC108413672,LOC108441967,LOC108413998 non-coding downstream 19741 10692341 ~ 10696794 (+)
G105539 NA non-coding downstream 80833 10753433 ~ 10775353 (+)
G105546 NA non-coding downstream 106648 10779248 ~ 10785938 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 273210 10353161 ~ 10390600 (+)
G105248 NA other upstream 456358 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 553367 10093455 ~ 10110443 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 948121 9703426 ~ 9715689 (+)
G105011 NA other upstream 990465 9669634 ~ 9673345 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 49372 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 697648 11370248 ~ 11372691 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 1354955 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 1421357 12093957 ~ 12097646 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 2164982 12837582 ~ 12848667 (+)

Expression


Co-expression Network