pdgfd (LOC107689581,LOC107670136,LOC107756229,LOC107725770)


Basic Information

Item Value
gene id pdgfd
gene name LOC107689581,LOC107670136,LOC107756229,LOC107725770
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 23090925 ~ 23114178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259321.1
GAGCACTGCAGGCCAAAACAGTTCAATGAATTCAGAACTGATAAATTAAACACACGTGACGAGGTCACGTGACAAAGCATACTGTTTATCTTCAGGTTCTGTTTAAAAACTGCTGGGCAGCATGTAGTGAGTTTTTATTCCATAGTCTAGCCCTGCGTAACGACGCGCATGCTTTTCACTCTATATGCCCAAAATTAATATCGCATAGAATTTATTGCGGATGGTATGCACTATATATTATTCCAATAATTCAGACGCTAGAGCGGAAATGTCCTGATCTGATAAAGCGCAGTCGTTCACGAGCAAGCCCTTAAGTAAACGCGTATTAAATGATGTTCCTAGACTCGATAAACGCTCAAGTCATGGCCTGCAGTCGGCTGAATGCTTGAATCCCGCGCGTAACGCCTTCGCAGTCCTCAGGGAAACTCAAAACTTTTCCTTGCGGcgaaacaaacaggaaaagaGCGGCGGCGTTACGCACCGAGGGAAAATATTCCCGCGAACACTCAGCGAAGCGCGCCCCGCGGGCGTTATTTCCTCGTCCTGACTGGATGAAGGGGGTCCAGCCCTCCTGggcttcctctctttctccttccaTCTCTCAGCAGCTCGGCAACCCGATCTTTCAGCAGGAGTTTGACGCGTGAACTCTGGGAATCCTTCGGCACCCCGCGCGTCACTGTCGCCAGGACACTTTTCTCGCGTCCTCGGGTTTCCGTAAATGTTCAAGGAATGGGAAGCATTCGGGTGGAATTATAAGATCGGGGTCGAACGGGACAGAAGCAGATAAAGTCGGAGGTTTTGGATTCCGCGGCTCGCTTTATATGAACCTGTTCTCCGGATCTGAGGACGCGCGGCGCTACGGTGGAAGCTCCGGGTCCATGCGGCGCTTCTGGGTCACGCGTCAGCGCGCGGTTCGGTTCCAGATCATGTGGCTGCTCGTGTGCTCCTTCATCGCGGCGCTGAGCGGCGAGAACTACGCCACGCAGGCCCAGGTGATGTCCTCCAAGGCGCTGAGGGCTTCCAACGCGCGCAGCAATGTAACAGACAGCAATCGCCTCACAGACTTGTACCGGAAGGAAGAGGTCGTGATGGTCAAGAGCGGAGGTCACGTCCAGAGCCCGCGCTTCCCCAGCTCTTACCCTCGCAACCTCCTGTTGTCATGGAAACTGCACTCGCCGCCCCACACGCGCATCCTGCTGGAGTTCGATGCTCAGTTTGGACTGGAGGAGGCGGAGAATGGAGTCTGCAGgtatgATTATGTGGAGGTGGAGGATATTTCTGAAACCAGCACCATCATCTGGGGCCGCTGGTGCGGGCAAAGAGCTCCAACACGGATCACATCCAAGACTAACCTCATCAAAATCACCTTCAAATCGGACGATTACTTCGTAGCAAAGCCGGGATTCAAAATCTGCTATTCACTGCTGGACAGCTCAGCTCTCGCCTCGCTGACCAACTGGGAAGCAGTTACAGCGATGTCAGATTTCAGGGAGGTCTCCGGGACGGATACACCACTGTCTGCCGTCGCCCTGGACAACGACATCGCCAGCATCAGCACGGTGGAGGAGCTCCTGAGACACATGAACCCCTTCACCTGGCAGGAAGACCTGGAGcagctctacacacacacacactactacagACCGAGAGCCTTCCACACCGACCGCAAGTACAAGAtTGATCTCGACCGTCTCTATGACGACGTAAAGCAGTACAGCTGCACTCCACGTAATTTCTCGGTGAACCTCCGCGAGGAGCTAAGGGCGACCAACGCCGTGTTTTTCCCACGATGCCTCCTGGTGCAGCGCTGCGGGGGAAACTGCGCCTGTGGCACCGACAACTGGAACTCATGCAGCTGCAGCGCTGGGAAAACCGTCATGAAATTACACGAGgTGCTGAAGTTTTCTCCAGGTCCAAGTTTCCACAGGAAGAGAACACGAGCTCACTGGGTTCTGGAGGAGATTTACCTGCAGCATCATGAGagatgtgactgtgtgtgtctgtccagACCGCCgcgatgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagagagacacagacagacagagagacacacacacacacattcagatgTGTAGCTACAGATCATGCGTCTACCTAAACCAAAACCTTATTAATAACACaagagagatacacacacacacacacacacacacacacacttcagtccAGTGTTGGGAGACTCTGATATAATGTAGCTACtctatttctgtttctttttatgttttagatgtTATTGTTCAGTAAAGTCACATGGAACTTTCCAatggaataaatgaatattaatgaggctTTTGCTCTCCGAGACCAATCAGAAGTCAGCGCTCGCCGAAGGGGCGGATCCCTCACGATCTGACCCAAGccagtgttatttattaaaagaactgtcttttgttttt
>XM_043259322.1
AGCACTGCAGGCCAAAACAGTTCAATGAATTCAGAACTGATAAATTAAACACACGTGACGAGGTCACGTGACAAAGCATACTGTTTATCTTCAGGTTCTGTTTAAAAACTGCTGGGCAGCATGTAGTGAGTTTTTATTCCATAGTCTAGCCCTGCGTAACGACGCGCATGCTTTTCACTCTATATGCCCAAAATTAATATCGCATAGAATTTATTGCGGATGGTATGCACTATATATTATTCCAATAATTCAGACGCTAGAGCGGAAATGTCCTGATCTGATAAAGCGCAGTCGTTCACGAGCAAGCCCTTAAGTAAACGCGTATTAAATGATGTTCCTAGACTCGATAAACGCTCAAGTCATGGCCTGCAGTCGGCTGAATGCTTGAATCCCGCGCGTAACGCCTTCGCAGTCCTCAGGGAAACTCAAAACTTTTCCTTGCGGcgaaacaaacaggaaaagaGCGGCGGCGTTACGCACCGAGGGAAAATATTCCCGCGAACACTCAGCGAAGCGCGCCCCGCGGGCGTTATTTCCTCGTCCTGACTGGATGAAGGGGGTCCAGCCCTCCTGggcttcctctctttctccttccaTCTCTCAGCAGCTCGGCAACCCGATCTTTCAGCAGGAGTTTGACGCGTGAACTCTGGGAATCCTTCGGCACCCCGCGCGTCACTGTCGCCAGGACACTTTTCTCGCGTCCTCGGGTTTCCGTAAATGTTCAAGGAATGGGAAGCATTCGGGTGGAATTATAAGATCGGGGTCGAACGGGACAGAAGCAGATAAAGTCGGAGGTTTTGGATTCCGCGGCTCGCTTTATATGAACCTGTTCTCCGGATCTGAGGACGCGCGGCGCTACGGTGGAAGCTCCGGGTCCATGCGGCGCTTCTGGGTCACGCGTCAGCGCGCGGTTCGGTTCCAGATCATGTGGCTGCTCGTGTGCTCCTTCATCGCGGCGCTGAGCGGCGAGAACTACGCCACGCAGGCCCAGGTGATGTCCTCCAAGGCGCTGAGGGCTTCCAACGCGCGCAGCAATGACTTGTACCGGAAGGAAGAGGTCGTGATGGTCAAGAGCGGAGGTCACGTCCAGAGCCCGCGCTTCCCCAGCTCTTACCCTCGCAACCTCCTGTTGTCATGGAAACTGCACTCGCCGCCCCACACGCGCATCCTGCTGGAGTTCGATGCTCAGTTTGGACTGGAGGAGGCGGAGAATGGAGTCTGCAGgtatgATTATGTGGAGGTGGAGGATATTTCTGAAACCAGCACCATCATCTGGGGCCGCTGGTGCGGGCAAAGAGCTCCAACACGGATCACATCCAAGACTAACCTCATCAAAATCACCTTCAAATCGGACGATTACTTCGTAGCAAAGCCGGGATTCAAAATCTGCTATTCACTGCTGGACAGCTCAGCTCTCGCCTCGCTGACCAACTGGGAAGCAGTTACAGCGATGTCAGATTTCAGGGAGGTCTCCGGGACGGATACACCACTGTCTGCCGTCGCCCTGGACAACGACATCGCCAGCATCAGCACGGTGGAGGAGCTCCTGAGACACATGAACCCCTTCACCTGGCAGGAAGACCTGGAGcagctctacacacacacacactactacagACCGAGAGCCTTCCACACCGACCGCAAGTACAAGAtTGATCTCGACCGTCTCTATGACGACGTAAAGCAGTACAGCTGCACTCCACGTAATTTCTCGGTGAACCTCCGCGAGGAGCTAAGGGCGACCAACGCCGTGTTTTTCCCACGATGCCTCCTGGTGCAGCGCTGCGGGGGAAACTGCGCCTGTGGCACCGACAACTGGAACTCATGCAGCTGCAGCGCTGGGAAAACCGTCATGAAATTACACGAGgTGCTGAAGTTTTCTCCAGGTCCAAGTTTCCACAGGAAGAGAACACGAGCTCACTGGGTTCTGGAGGAGATTTACCTGCAGCATCATGAGagatgtgactgtgtgtgtctgtccagACCGCCgcgatgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagagagacacagacagacagagagacacacacacacacattcagatgTGTAGCTACAGATCATGCGTCTACCTAAACCAAAACCTTATTAATAACACaagagagatacacacacacacacacacacacacacacacttcagtccAGTGTTGGGAGACTCTGATATAATGTAGCTACtctatttctgtttctttttatgttttagatgtTATTGTTCAGTAAAGTCACATGGAACTTTCCAatggaataaatgaatattaatgaggctTTTGCTCTCCGAGACCAATCAGAAGTCAGCGCTCGCCGAAGGGGCGGATCCCTCACGATCTGACCCAAGccagtgttatttattaaaagaactgtcttttgttttt

Function

NR:

description
platelet-derived growth factor D-like

GO: NA

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259321.1 True 2481 mRNA 0.52 7 23090925 23114178
XM_043259322.1 False 2456 mRNA 0.52 7 23090926 23114178

Neighbor

gene id symbol gene type direction distance location
gucy1a2 gucy1a2,LOC107566890,LOC107706059,LOC107669873,LOC107725744 coding upstream 152993 22908551 ~ 22937932 (+)
cwf19l2 cwf19l2,LOC107670086,LOC107706063,LOC107728743,LOC107669872,LOC107566889,LOC107560834 coding upstream 193251 22877852 ~ 22897674 (+)
LOC122358713 NA coding upstream 233486 22856477 ~ 22857439 (+)
LOC122359065 NA coding upstream 234109 22853258 ~ 22856816 (+)
LOC122358712 NA coding upstream 238276 22839191 ~ 22852649 (+)
fzd4 fzd4,LOC107600811,LOC107551868,LOC107725773 coding downstream 143572 23257750 ~ 23262190 (+)
LOC122358508 parl,LOC107670111,LOC107689587,LOC107725764 coding downstream 258482 23372660 ~ 23378269 (+)
atg16l1 LOC107689588,LOC107551872,LOC107670107,LOC107600818 coding downstream 262400 23376578 ~ 23400826 (+)
cldn15lb cldn15lb,LOC107577838,LOC107725763,LOC107670109,LOC107689589,LOC107551871,LOC107578549 coding downstream 264532 23378710 ~ 23385104 (+)
LOC122359600 NA coding downstream 278577 23392755 ~ 23393038 (+)
LOC122358995 NA non-coding upstream 24709 23041070 ~ 23066216 (+)
G109006 LOC104959606 non-coding upstream 84139 22998530 ~ 23006786 (+)
G108986 gria4a non-coding upstream 102284 22869575 ~ 22988641 (+)
G108981 NA non-coding upstream 252803 22837685 ~ 22838122 (+)
G108949 NA non-coding upstream 315352 22774778 ~ 22775573 (+)
G109018 NA non-coding downstream 2651 23116829 ~ 23117749 (+)
G109030 NA non-coding downstream 26052 23140230 ~ 23141517 (+)
G109047 NA non-coding downstream 89294 23203472 ~ 23203723 (+)
G109048 NA non-coding downstream 91082 23205260 ~ 23205504 (+)
G109130 NA non-coding downstream 129367 23243545 ~ 23243770 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other upstream 131246 22955711 ~ 22959679 (+)
G108990 NA other upstream 137412 22949140 ~ 22953513 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other upstream 313200 22775649 ~ 22777725 (+)
G108573 NA other upstream 1353238 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 1355207 21735014 ~ 21735718 (+)
G109132 NA other downstream 132597 23246775 ~ 23271291 (+)
G109193 NA other downstream 395254 23509432 ~ 23510315 (+)

Expression


Co-expression Network