rnf26 (rnf26,LOC107718270,LOC107601726,LOC107690456)


Basic Information

Item Value
gene id rnf26
gene name rnf26,LOC107718270,LOC107601726,LOC107690456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13287279 ~ 13291108 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259334.1
aaacatttaaaatggaaacaaCGTACATATTGTAGAACACGTCCAATATTCTAATGACAAAAGCCAAATAAATTAACCAcccaataaattaataaataaatgaaggcaGTGATTCAATCAAGCATGCCAATATGGctgtttgaaattaaaaatagcacagataaggatttatttgtttaaacaatTGGTCACGCATGATTGCATTTTCCCCATTCTCtaaatcttcacacacacaacgcattgttttgtaatataatcAGTGCACgcataataaaaatgagcaaGTGAAGGCGCGTGTCTGCGCAGCCCGAGCGCCGGATTGATCCTCTTCAAACACGCGTTGCAAAGCGGAAGCGACTGACCGAAACAGACGGAGGAGCTTTAGATTTTAACTCATTAATAATCCAAACAAAGACGCAAGTTTGTCGCCGTCTTGGAGCTTCACAAAATAACGCGGACGCTTGGGTCACACCGTCTGCGGCAATGAAGGTCTACGTGGGATACATCTTTACGCGACCGGCCAACGTCAGCGGTTTCGATTTTCAAACGTAAACATCCGCCGAGCAGTTTCCCGTCCATGTGTAAGCAGCCACTACACTATGCTACCCATGTTTAGGCTGGTGTTTCGGTCCAAAACAGAGGACATGCCATTCCCGGCTAATGGTCAGTTGTAATACGACTtgccttgattttattttaacaccaaGTGGTCTGCCAAGCCGTCGGCGTTTGTAAAGCTTCGAATGGGTTAGCACGCGAGCTAACCTGGCTGCGagagctgtttgtttgtgtaactacagaCTCAATTAtgtcgtttgacagcacaaataacACGCCAGATAACATATAGTCCATTTCGAGAAACAAAGGCGACAGTTTTACGAGCGGACATCCTTATTATGGGTCTACTGAACTTTGTTTTTAGTTCAATTGGAAAATGCATAGATGTCGTTTGCCTCCTCCTGGATTTAAACTTCGTGATCGTCAGCTCAGTAATTCATCTGTTGGTGGCAGTGATCTCCTTTGTCAATAGTCTGCCCATGCTACTCACAAATTCAGTGTCGGAGTGCTGGAATCTCACTCTGCTTTGCATCATTACCATGAGGGACGGAGTGACCGTCGTGACCCATAACATGGTCGGAGGCTGGATGCAGCTGCTGGGAGGCGTCCTGGAAAGCTTTAAGATGATCGGATACCTGTCCTCGCATCTACTTCTCCGCACCAAAGAGCTTCTCCACCGCGGACTGTTGTCAGGACATGGCTTGCTGCGACAGGCCTGGGAGGGCTGTGGAATAGTTTTCAGCTTGCTGCTGTATTTCATCAACACGATCATCAACCTGCTGCTCATAGGCACCCAGAATTTGTACTCCGTGGTGGTCAGCACGGTGGAAGCGGTGTCCAGCCCTTTGCAGAAAGCTCTTGAGCTGACTTTGACGGTGCTGACGTTTCTTTACAGCAGTCTTGTCGGCACCTCCATCCTGCTGTGGACGCCGTGCAGACTGGCCATGGAGTTTTTGGGATCCGTGTGCCATGTGTTTGTGAGCATTTTCCTGCTCAACTCGTACGGGCTGCTGCTCACGTTGATCATAATCGCGAGCGCCACGGTGTATCTAAACCCTGCACTCCCGCGTCTTGCATCCGCGCGCGCGATCAACTACATCAACGCTGTTCCCATCCTGCAGCGCCTCCGGAGGGCTCTACGCCGCCTCTGTGTGCTGGAGAGGAACGTGTGGCGGCGGTTGGCCTGGCATCGCAGCCAGATAATGGTTCCTGCGAGGATGGAAGTGGAAGAGAGGGACGCTAGACAGCCCGATCCCAACCCTGAGCCTCGAGTTGATCTGAATGTGCCAGAAAACGCACCTGAGGATGCCAACCAAGTGGATGACCCAGTAAACCCGCCGCATCCCAGTTCCAGCACTCGCAGGCCACTCCGGAAGTTTCCTTCGGAGGACAGTTGCAAAGGCCCTCCGGCTGACAACCTGCTGACTCTTCTGCAGGAGCAAGAGGAGAGGAAGAAGTGCGTGATCTGTCAGGACAGCACCAAGACCGTCGTGCTCCTGCCGTGCCGGCACTTGTGCTTGTGCAGAGACTGCACCAACATTTTGCTCAGCCAGCCTTTCTACCAACACAACTGCCCCCTGTGCcgccacatgatccttcagaccaTGGACGTGTATCTCTGAGGGAAGCGTTTACGGATGTGTTTCTGTCGTCCTCAGGTTTTTTGAGCAGCACTGTTCTCGAAATGTGGGAAACCACTTGTTCCTTTTTTGCAGACGTTGTTCATTCCACTACTGTTGCTTGTATATAGATTTAAATCACAACCTTTTATAAATCGTGGTGGCGAGGCTGATGACCGTGACCCTGCTTTCTTATGGTTTTATATTCATTGTCACTTTTTTCATCTGCTTGTAGAAGCAACACTATTTTTCTCATACAGCAATATCACATGAATGTAAGCtttgtattataaaacattaaaacggGGTGTTAATTGTGAAGGTTAGAGATTTCTAATTGTCAAGTGTTTATGGGGAACATTTGTATGCTACAATACTAACATTGAGCCTTATCGTATGAATTGTTGTCTacttgattgattttttttgtagccTGACTGTAAAAGGTTTCATGGGAACCTTTGAAAACTTGCGATAATCTACAAGTAATTCACATGTCTTCCGTCCAGCAGTTAGTGTCTTGTAAAGACAAACTATTCCAAAAGAGTCCTTGATACTTCTTTCTCCgttaaaagagaagagaaatatgcacagattaaGCAACGTTTAGAAGCAGAAACAGTCCAGAaaatttctaaacaaatatatttgatgCATGGGATGGACTTTTTAACTGgaggaaatgtaaatattgcCAGAAATTGAATAGTTTAGCTCACGTTTATTAGAAACATGCAGATTAATTGTTAATTGATGGATTGAAGTCTTGTGAATTACTGTGATGTTGATGAGGAATATTTGTATACTACAATTAATGTTGGGCCTTAGTATGTTTTGTTGTCTACTGTAAAGGTTTTCATTGGAGCATCTACaacatcatattatttttttgtgtgaatattTAGTTCTGCTTTACATACGTTGTAATCATTCCACCAAAGCTGTTTTGCactctttttaaatgcaagtgtCACTACAGTATTTTCAGAAGCCATTCTACAATCTcattcatgctgtttttgtcatttattattgaaCAGCATTAGGGCTCTCTCACCGCTCAAGTGGTATTGATTAACGCATTTCAAAATCGAAATtttgagcttgttttttttgttttgagagaCAGTAATTCAATTCAGTTACCGGTAAAAACAGAGGCAGAGAGGCTTTTAGCTCAGCTTTGAGCAGGGGATGATGTTAGAAATGACTATTCGAGAAACAAGGTAGCACTGCCTTTTCTGGTTTATCTCATTTATTTGGTCTTACACGATGCTTCAAAACCCATTCAGAAAGGCACAATGCGCAAAGACAATCAGGTGCATTTGCAAGGCATGCAAGCTGTTGTccttctttaaaacatttaaaaaatggctcCCGAATTATTTCGGCATCTCTCAATTTTGCACAATGCAGCTGACAAGCATGGTTTGTCATTGTAATTTTAAGGTTTTCAAACAAGCTGTGATTTCATTCCATATCAAGCCCCAAGCCTTTTGTATTCTTGTACAGCAGATATTTGTTTTCTATGAAGGTCTCCAGTGATGATGTTTGTGGGTAGAGCGGATGGCTGTCTCTCCAGAGGCCTGGATAATATCAAAACCACATTCACTGACTATCCAACTGAACAATAAACAGTATTTGACTGTG

Function

symbol description
rnf26 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

NR:

description
PREDICTED: RING finger protein 26

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15693 RNF26; E3 ubiquitin-protein ligase RNF26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259334.1 True 3830 mRNA 0.44 1 13287279 13291108

Neighbor

gene id symbol gene type direction distance location
cbl cbl,LOC107718267,LOC107601723,LOC107690460 coding upstream 36062 13226503 ~ 13251217 (+)
grik4 grik4,LOC108439963 coding upstream 68060 12957097 ~ 13219219 (+)
arhgef12a LOC107709137,LOC107696008,LOC107586229 coding upstream 344630 12903006 ~ 12942649 (+)
tlcd5a tmem136a,LOC107709136,LOC107601721,LOC107586230,LOC107717274,LOC107657235,LOC107696007,LOC108436527 coding upstream 384819 12898047 ~ 12902460 (+)
oafa oafa,LOC107709135,LOC107696006,LOC107586231,LOC107717291,LOC107657251,LOC107601720,LOC105912781 coding upstream 390298 12883017 ~ 12896981 (+)
phykpl phykpl,LOC107743705,LOC107683819,LOC107585546,LOC107690454,LOC107601730,LOC107718273,LOC108439974 coding downstream 51889 13342997 ~ 13346999 (+)
si:dkey-182i3.9 LOC107683825,LOC107743700,LOC107585549,LOC107718302,LOC107601733 coding downstream 88545 13379653 ~ 13382951 (+)
LOC122359520 LOC107718276,LOC107683827,LOC107690448 coding downstream 92240 13383348 ~ 13389819 (+)
LOC122358638 LOC107743729,LOC107683828,LOC107690447,LOC107601734,LOC107718295 coding downstream 92621 13383729 ~ 13385498 (+)
si:dkey-182i3.10 LOC107743729 coding downstream 99425 13390533 ~ 13393817 (+)
LOC122358384 NA non-coding upstream 331472 12945077 ~ 12955807 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding upstream 506904 12773457 ~ 12780375 (+)
G106171 NA non-coding upstream 515209 12771795 ~ 12772070 (+)
G106161 NA non-coding upstream 546202 12738051 ~ 12741077 (+)
LOC122358874 NA non-coding upstream 705477 12580364 ~ 12581802 (+)
G106276 ube4a,LOC107743704,LOC107718272 non-coding downstream 44200 13335308 ~ 13336677 (+)
G106350 NA non-coding downstream 389072 13680180 ~ 13685449 (+)
G106354 NA non-coding downstream 401271 13692379 ~ 13692893 (+)
G106370 NA non-coding downstream 508193 13799301 ~ 13811099 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding downstream 591013 13882121 ~ 13884081 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 438612 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1189633 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1256730 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 1914588 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 2558884 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 625465 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 666089 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1621803 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 2415405 15706513 ~ 15712439 (+)
G107107 NA other downstream 2590006 15881114 ~ 15883510 (+)

Expression


Co-expression Network