or40a1 (LOC107559006,LOC107683439)


Basic Information

Item Value
gene id or40a1
gene name LOC107559006,LOC107683439
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17160030 ~ 17161016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259509.1
ATGAATTTTTCAGTTGCTTTCAGCAATGGAACAAACTCTTTCAACGACGGATTTTATTTAACTGCCTTTCGCACTCTGGCAAACAAAAACTACCTCATTTTGgccttgtcagtgatctacatCGTCACCTTGCTGGGTAACCTTGTTCTACTGACTGTTGTCGTAATGAACTCCAGCTTACAGAACCCCAAGTATCTTGCTGTGTGTAATCTAGCCATTGTTGATATTTCAGTGAATAGTGTTATTATTCCTCAAATGGTACCTGTTTTTGTGTTCAATCAGAATTATGTTTCATTTGGAGCGTGTTTTTCCCAAATGttcttcatgcatttttttggcGACATGGAATCTTTTTCTCTTGCTCTTTTGGCGTATGATCGTCTGATCGCGATCTGCTGGCCTCTGCGTTACTCCACCATTAACACCAACCTGAGGATGCTGCTCATAATAGTAGGGATTTGGTCTCTGGTTGTTCTGCTTGAGATTTTCCCAACTATTTTTGCAGCCAGACTCCCTTACTGTGACTCGAGAGAAGTAAACAGCTGTTGTTGTGAACACGGTCCAGTCTATAGGTTGGCTTGTACAGACATTTCTTACAACCGACAACTGGCTACAGCTAAGACTCTGATTTGTTTACTAGGCCCTTTGTCTTTTATTATCTTCACCTATGTAATTGTAGTGGTCGCTGTGACAAAGATTGCATCCATATCACAGCGCTGGAAGGCCTTCAATACCTGTCTTACTCATCTGCTGTTAGTGCTGATCTATTATATGCCTGTAATTCTAGCATATGTACTAGGAAACCTGCGATTAGTTCAGAATGTAGATCTTTTCACAGCAATTCTGACTGTTTCTGTTACCCTCCCACCAATGCTGAACCCCATCATCTACAGCTTAAAGACTGATGAACTCAGAGAAAAGGTAGTGAGGCTTCTGAGAAAGTCAAAAGTGGCACAACAGATCATTAAAAATGAGAACAATGGCTAA

Function

NR:

description
PREDICTED: olfactory receptor 52K1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259509.1 True 987 mRNA 0.41 1 17160030 17161016

Neighbor

gene id symbol gene type direction distance location
LOC122358375 LOC107672077,LOC107672078,LOC107592966,LOC107757247,LOC107588093 coding upstream 34228 17124822 ~ 17125802 (+)
LOC122359259 NA coding upstream 71504 17086908 ~ 17088526 (+)
LOC122359039 LOC107587445,LOC107672106,LOC107746657,LOC107592923,LOC107682744,LOC107756362 coding upstream 122105 17031073 ~ 17037925 (+)
LOC122359040 NA coding upstream 131315 17026879 ~ 17028715 (+)
LOC122358381 nlk1,nlk,LOC107678874,LOC107582859,LOC107754939,LOC107684639,LOC108410603 coding upstream 142751 16991795 ~ 17017279 (+)
LOC122359375 LOC107672087,LOC107746675,LOC107683442 coding downstream 6749 17167765 ~ 17168715 (+)
LOC122358664 LOC107588000,LOC107746701,LOC107672094,LOC107587345 coding downstream 49524 17210540 ~ 17211529 (+)
LOC122358512 LOC107588000,LOC107672094,LOC107746701,LOC107587345 coding downstream 65095 17226111 ~ 17227094 (+)
LOC122359253 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding downstream 68110 17229126 ~ 17230142 (+)
LOC122359245 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding downstream 71575 17232591 ~ 17233607 (+)
G107427 NA non-coding upstream 54684 17105067 ~ 17105346 (+)
G107424 NA non-coding upstream 69057 17086659 ~ 17090973 (+)
G107272 LOC107592917,LOC107757278,LOC107682697 non-coding upstream 277709 16880657 ~ 16882321 (+)
G107309 NA non-coding upstream 298553 16861187 ~ 16861477 (+)
G107308 NA non-coding upstream 299042 16860770 ~ 16860988 (+)
G107437 NA non-coding downstream 34487 17195503 ~ 17195885 (+)
G107438 NA non-coding downstream 35138 17196154 ~ 17198330 (+)
G107440 NA non-coding downstream 37439 17198455 ~ 17199613 (+)
G107443 NA non-coding downstream 39392 17200408 ~ 17200937 (+)
G107447 NA non-coding downstream 148329 17309345 ~ 17314661 (+)
lyrm9 lyrm9,LOC107756492 other upstream 645809 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 923689 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1116765 16004869 ~ 16043265 (+)
G107107 NA other upstream 1276520 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1447591 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 628829 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 671056 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 884001 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1595327 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1598566 18759582 ~ 18760497 (+)

Expression


Co-expression Network