LOC122359229 (LOC107683442,LOC107746667,LOC107757158,LOC107683403,LOC107746666,LOC107587991)


Basic Information

Item Value
gene id LOC122359229
gene name LOC107683442,LOC107746667,LOC107757158,LOC107683403,LOC107746666,LOC107587991
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17261395 ~ 17262358 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259538.1
ATGTCAGTGGGAAACATCAGCTTTGTAAAGGAGTTTGTCATAGTCGGCTTTCCTGGACTTCAGCCTCCTTATTATGTCGTTGTATCAGCACTTCTGTTTTTTGTCTATGTTTGTACATTGGCTGgaaatagtatattttttattttatttataatgactAAGAGTCTTAAAAAACctgtttattattgcattataaatCTAGTCGTATGTGATGTACTATTCAGCACCACAACATTACCAAAGATAATCAGCAGGTACTGGTTTCAAGATGGAACCATTTCATTCTTGGGTTGTTTTGTTCAGATGTTCTTTGTGCATTATTTAGGTAGCGTTGGTTCTTATGTTCTAGCTGTAATGGCTATAGATCGATATGCTGCAATTTGTTACCCGCTTCAGTATCATAGTCTCATGACAAACCAAAATGTAATCAATCTGATCCTGGGCTGTTGGATTTTGGGTTTAGTGGGTCCTTTAATGATAGTAATTAGAGCTTATCCTCTCCCTTATTGTGCAGAAAACACCATTATACACTGTTACTGTGATCATGTCTCCATCACAACACTGGCATGCACAGACAGATCACTATATAGTATTCCAGCTCTAATCAACGCTCTTGTAGTACTGCTGGGCTCTCTtgctgttatcatttactcttACTGCTCCATCTTTGTGGCAGTTATGCGAATTTCAAGCACTCAAGGAAGGATAAAGACTTTCTCCACCTGCAGTCCTCAGCTCATCATAATTGCTCTCTTTTTCTTACCtaggtgttttatttatttgtctagtAACATTGGTATTAAGTTGAGCACTGATTTGCGattaattattgttatgatGTATAGTTTGTTGCCGCCCATGATCAACCCCCTCATTTACTGTTTAAGAACAGAAACAGTGAAAAAGATCTTAAGAAGTCAATTTCAGAAGAGGAAAATTGCCATGTCTTTACATTTGCTCTGA

Function

NR:

description
PREDICTED: olfactory receptor 6N1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG:

id description
K04257 OLFR; olfactory receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259538.1 True 963 mRNA 0.37 2 17261395 17262358

Neighbor

gene id symbol gene type direction distance location
LOC122359433 LOC107746667,LOC107746666,LOC107757158,LOC107683403,LOC107559004,LOC107587991,LOC107668350,LOC107588291 coding upstream 1557 17258873 ~ 17259838 (+)
LOC122359423 or103-2,or103-5,LOC107746667,LOC107746666,LOC107587991,LOC107668350,LOC107588291,LOC107757158 coding upstream 8037 17252396 ~ 17253358 (+)
LOC122359258 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding upstream 21050 17239332 ~ 17240345 (+)
LOC122359245 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding upstream 27788 17232591 ~ 17233607 (+)
LOC122359253 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding upstream 31253 17229126 ~ 17230142 (+)
LOC122358385 NA coding downstream 33641 17295999 ~ 17296934 (+)
LOC122358671 LOC107672094,LOC107588000,LOC107746701,LOC107587345 coding downstream 106740 17369098 ~ 17370108 (+)
LOC122358673 LOC107588000,LOC107746701,LOC107672094,LOC107587345 coding downstream 110785 17373143 ~ 17374153 (+)
LOC122359272 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding downstream 124666 17387024 ~ 17388040 (+)
LOC122359274 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding downstream 131779 17394137 ~ 17395152 (+)
G107443 NA non-coding upstream 60458 17200408 ~ 17200937 (+)
G107440 NA non-coding upstream 61782 17198455 ~ 17199613 (+)
G107438 NA non-coding upstream 63065 17196154 ~ 17198330 (+)
G107437 NA non-coding upstream 65510 17195503 ~ 17195885 (+)
G107427 NA non-coding upstream 156049 17105067 ~ 17105346 (+)
G107447 NA non-coding downstream 46987 17309345 ~ 17314661 (+)
G107450 LOC108433790 non-coding downstream 191936 17454294 ~ 17457686 (+)
G107468 NA non-coding downstream 217490 17479848 ~ 17480048 (+)
G107477 NA non-coding downstream 303835 17566193 ~ 17566876 (+)
G107547 NA non-coding downstream 553774 17816132 ~ 17816825 (+)
lyrm9 lyrm9,LOC107756492 other upstream 747174 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1025054 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1218130 16004869 ~ 16043265 (+)
G107107 NA other upstream 1377885 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1548956 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 527487 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 569714 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 782659 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1493985 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1497224 18759582 ~ 18760497 (+)

Expression


Co-expression Network