itm2ca (itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866)


Basic Information

Item Value
gene id itm2ca
gene name itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21202849 ~ 21210105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259545.1
TCATTCTGGGTCGCGCGCATCATCGCCAGTGTCGCCGGCACTGTGACTTTAAGAGCgattttttaagaatataaatatataaataaataatacgttCATCCGGTCCATTGTAACAAACGGCAAATACAGTGTCATAAAGCTAAGGGGGTACAAAGGATCCGCGGTCTCGCTAAAAACAGCGGTTTTTCCCTTCATCATGGTGAAGATCAGCTTTCAGCCCATCACGGGACAAAAAGCCGAGAAAGAGGAGGGTGATGGAGATAAAACTCAGATATTCATACCGCATTCGCACgTGGAAGAGGAGCTGGTCTTGCCTGTCGGACGGAAACGCTCCTCTCTGAGTGGACTTTGCTGTCTGACAACTGCGCTGATTGTCTTCACCTGCAGTTTGATATACGCTTCAATTTATATCTACCGCTACTACATCATTCCTCAGGTTCCGGATCAGAGTCGCATTCACTGCCGTGTCGTGTACGAGGACTCGGTGGCTGCTCCACTGCGAGGGTCTCACGAGCTGGAGGAGAGCGTTGGGATCTACCTGAAGGAGAACTACGAGCAAATCAGCATACCTGTGCCCGACTTCAGCAACACGGACCCCGCTGACATCATTCACGATTTCAACAGGGGTCTGACGGCTTACCATGACATCGCCTTGGATAAGTGTTACGTCATCGAGCTCAACACCACCGTGGTCATGCCGCCACGTAACCTCTGGGAACTTCTCATCAACGTCAAGAAAGGGACTTACCTCCCTCAGACGTACATTGTCCAGGAAGAGATGGTCGTGACTGGCCGCGTTAATAATATGCATCAGCTTGGCCGCTTTATTTACCGTCTGTGTAACGGTAAAGATACGTACAGGCTCCGTCGTCGCACCTCACGCCGGCGTATCACCAAGCGTGATGCGCAGAACTGCCACCGAATCCGTCACTTTGAGAACACTTTCGTGCTGGAGACAGTGATTTGCGAGACTCCATAAGCCGTTCGTCACTTTACCACGCCTATTTCTGATGAGACCACGCCCTCTGGTCTCGGTAGCCACACCCCTTTGAAAATCACACTCTTTACCTCTGACGTCTTTGCAcctcatttctctctttttgtactttttgtctctctctctgtaccgAGTAATTCATTACATCCCTTGACAATGTCCGAACGGTTTGTTTCTGCACATTCGCAATAATGAGCATTTTCTAATCGatgcatttaaaagtgtaaCAGTAGCATCTGAAGTCTTTAAATGAGAAGATTACATGGGCATTAAGCTGCACAATGCCTGCATGGTCGTACCTGCGTGTAACTGGCTGTTTTGTGCTCCATCAAACTGCTCTTTGCTCTCTTATATATTCGTGTGTTTTTAGATCTATTCTGGGATAGAGATGCACCGAAACTGCGGCCAAAAATACCATAAACCGACAAAAAAATCTCTGAAGTGCAAAAATCGTTTGATTGTGCTCAAGTCTTCTTTTCAGGATTAATATTCACTTTTCTTTCGGTGCATCTCCATTCATGAATATCCTAACTGATCCTAGTGCCGGTTGAAGCGTACGATGAAAAATTGCTTCCATCATCACATTTATCACACGTGTTTGTTTACTACATCTCAATATCCACTTATTGCTTCTACAACATGCTTCCTGTGCCACTTCCTCTTTTCTTCGTTCTCTCTCTGCATGCTTTTCAAGGCAACACATGCATTGTTTGAGTATTTTCTTATCATATGAGCAAAGCCTTAGGCCAGATTCACGTCCTGGACTAATGTATACAATCTCAACAGCTCTtcgtgtttatgtgtgtgttgaagTTGAACCTTGTTTAGTTGGGTGAAGCAAACGTGTAAATAAACCAGTAAGACCTA

Function

symbol description
itm2ca Predicted to enable amyloid-beta binding activity. Predicted to be involved in negative regulation of amyloid precursor protein biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane. Is expressed in nervous system. Orthologous to human ITM2C (integral membrane protein 2C).

NR:

description
PREDICTED: integral membrane protein 2C

GO: NA

KEGG:

id description
K18265 ITM2C, BRI3; integral membrane protein 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259545.1 True 1864 mRNA 0.45 6 21202849 21210105

Neighbor

gene id symbol gene type direction distance location
cab39 cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174 coding upstream 1631 21193051 ~ 21201218 (+)
robo2 robo2,LOC107741616,LOC107745189 coding upstream 374934 20461144 ~ 20827915 (+)
LOC122358393 sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521 coding upstream 754763 20439195 ~ 20448086 (+)
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding upstream 764023 20405710 ~ 20438826 (+)
LOC122358498 LOC107735540 coding upstream 846224 20353829 ~ 20356625 (+)
ngef ngef,LOC107585734,LOC107745214 coding downstream 16047 21226152 ~ 21251420 (+)
trnai-aau_69 NA coding downstream 42637 21252742 ~ 21252815 (+)
trnaw-cca_2 NA coding downstream 43372 21253477 ~ 21253548 (+)
trnag-ucc_4 NA coding downstream 44829 21254934 ~ 21255005 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding downstream 45078 21255183 ~ 21263444 (+)
G108427 NA non-coding upstream 340 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 12476 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 352934 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 364271 20833494 ~ 20838578 (+)
LOC122359467 NA non-coding upstream 850465 20351597 ~ 20352384 (+)
G108553 NA non-coding downstream 406551 21616656 ~ 21617193 (+)
G108555 NA non-coding downstream 421224 21631329 ~ 21908852 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding downstream 424096 21634201 ~ 21911355 (+)
G108561 NA non-coding downstream 432478 21642583 ~ 21920410 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding downstream 516955 21727060 ~ 21727570 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 948578 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 952877 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 987370 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1428464 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 2206858 18993345 ~ 18995991 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1705 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 514299 21724404 ~ 21726266 (+)
G108571 NA other downstream 521876 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 524909 21735014 ~ 21735718 (+)
G108573 NA other downstream 526575 21736680 ~ 21737687 (+)

Expression


Co-expression Network