LOC122359275 (LOC107672094,LOC107588000,LOC107587345,LOC107746701)


Basic Information

Item Value
gene id LOC122359275
gene name LOC107672094,LOC107588000,LOC107587345,LOC107746701
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17400734 ~ 17401747 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259583.1
TTTCAGcttgttaaaacaaacaaatacaaagctGACATGAGTTCTACAAATGCTTTTTTCCAGAATATGTCTATTGTTCATCCTGAATACTTTTTCATTGTTGGACTTTCAGGTATACCATACAgcaattattattgtatttttttattgattgcaTATTTTATCGCTGTAATTGGGAACTCTATAGTCCTTCTCATTATAGCTCTTGAACGAAGTCTGCACTGTCCAAAGTACATTGGTGTGTTTAACTTGGCCTTGGCTGATCTTGGTGAAACTAATGCATGGATTCCTAACAtgatgaatgcttttttttctgactcACAGTACATGTCCTACAATGCTTGCTTGgctaacatgttttttgtgAACCTCTTTATTTCTGTGCAAAGTACCACTCTTGTTGTTTTGGCATTTGATCGCTTCATTGCAATTTGTTTGCCATTAAGATATCACGCAATAGTGAATAATACTGTCATGTCTTTAATGTTTGTAGTATTATGGATGTTTAACTCTTCTCTCGTGGCTCTGTCAACATCTTTGATGAACCAACTTTCGTTCTGTAAATCGAATGTGGTACAGagtttttattgtgattatgGACCAGTGTCAAGATTGGCATGCAACAACAACAgccttaatttgtttttaacaaatctCATTGCAGCTTTGTTCCTTATAGCACCAGTGTTCATTATAGTCTTATCATATCTGggcattttttttgctttaagtaAAATTACAACTTGGGAAGcacgtttaaaagcactgaagACCTGTGTTTCTCATCTTTTGTTGGTCGTAACATTTTTTCTTCCtataatatgcatgtttattgCTTCATCATTTACTTATATTACTCCCAATGCAAGAATCGTCAGCCTATCTCTTTCATTTACTCTTCCACCAATGTTAAATcctattatttatgttttaaacacagctgaaatCAGAGTCTTAATTCGAAAACTGCTTAAGAACAAAATTATGCCAATtagaaagaacattttaaaatga

Function

NR:

description
PREDICTED: olfactory receptor 51A4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259583.1 True 1014 mRNA 0.34 1 17400734 17401747

Neighbor

gene id symbol gene type direction distance location
LOC122359274 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding upstream 5582 17394137 ~ 17395152 (+)
LOC122359272 LOC107672094,LOC107588000,LOC107587345,LOC107746701 coding upstream 12694 17387024 ~ 17388040 (+)
LOC122358673 LOC107588000,LOC107746701,LOC107672094,LOC107587345 coding upstream 26581 17373143 ~ 17374153 (+)
LOC122358671 LOC107672094,LOC107588000,LOC107746701,LOC107587345 coding upstream 30626 17369098 ~ 17370108 (+)
LOC122358385 NA coding upstream 103800 17295999 ~ 17296934 (+)
LOC122359481 or103-2,or103-5,LOC107746667,LOC107746666,LOC107587991,LOC107668350,LOC107588291,LOC107757158 coding downstream 12272 17414019 ~ 17414981 (+)
LOC122359267 or103-4,LOC107559004,LOC107757158,LOC107683403,LOC107746667,LOC107746666,LOC107668350,LOC107587955 coding downstream 22764 17424511 ~ 17425472 (+)
LOC122359453 or102-1,LOC107588280,LOC107746700,LOC107704728,LOC107657422 coding downstream 27434 17429181 ~ 17430131 (+)
LOC122358674 NA coding downstream 30504 17432251 ~ 17433240 (+)
LOC122358675 LOC107757141,LOC107558992 coding downstream 32905 17434652 ~ 17435599 (+)
G107447 NA non-coding upstream 86073 17309345 ~ 17314661 (+)
G107443 NA non-coding upstream 199797 17200408 ~ 17200937 (+)
G107440 NA non-coding upstream 201121 17198455 ~ 17199613 (+)
G107438 NA non-coding upstream 202404 17196154 ~ 17198330 (+)
G107437 NA non-coding upstream 204849 17195503 ~ 17195885 (+)
G107450 LOC108433790 non-coding downstream 52547 17454294 ~ 17457686 (+)
G107468 NA non-coding downstream 78101 17479848 ~ 17480048 (+)
G107477 NA non-coding downstream 164446 17566193 ~ 17566876 (+)
G107547 NA non-coding downstream 414385 17816132 ~ 17816825 (+)
LOC122358482 NA non-coding downstream 456160 17857907 ~ 17859804 (+)
lyrm9 lyrm9,LOC107756492 other upstream 886513 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1164393 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1357469 16004869 ~ 16043265 (+)
G107107 NA other upstream 1517224 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1688295 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 388098 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 430325 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 643270 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1354596 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1357835 18759582 ~ 18760497 (+)

Expression


Co-expression Network