phykpl (phykpl,LOC107743705,LOC107683819,LOC107585546,LOC107690454,LOC107601730,LOC107718273,LOC108439974)


Basic Information

Item Value
gene id phykpl
gene name phykpl,LOC107743705,LOC107683819,LOC107585546,LOC107690454,LOC107601730,LOC107718273,LOC108439974
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13342997 ~ 13346999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259615.1
cttttccgCAGGTCAAAGTCTTGTCTGGTCTCCAGGCTGTAAACTGTCCGGTGTAGCAGACGAGCAAACCGTGTCGTCGCGATGGCTCTGGAAGTTTTTCAGAAAGATGAGACTTTGCAAATGCGCAGGAAGCTGATTGGgcACTCCTGCAGACTCTTTTTCTCCCATGAACCCGTGAAAATAGTGAGAGCACGGGGTCAATATCTATATGATGAGAATGGCACGCAGTACTTAGATTGCATTAGTAATGTTCAACATGTGGGACACTGTCACCCCAGCATCACTCAGGCCGCTGCTGCTCAGATGGATCTTCTTAATACAAACACTAGATTCCTCCATGATAATATAGTTCTGTATGCAGATCGGCTGGCTGCCACTCTGCCAAAGAAACtttgtgtcttttattttgtcaattCAGGATCAGAGGCTAATGATCTTGCTTTGAGACTGGCGCGTCAGTATACCCAACATCAGGATGTCATTGTGTTAGATCATGCATATCATGGACATCTCACTTCACTCATCGACATCAGCCCGTACAAGTTTCGGAAACTAGAGGGCCAAAAAGACTGGGTGCATGTGGCACCTCTTCCCGATACTTACCACGGCATCTACCGAGAAGATCATCCTGACCCAGGACAGGCTTATGCAGACACTGTCAAAAGTCTTATTGAAGAGGCTCATAAGAAAGGCCGCAAGatttcatctttttttgcTGAGTCTTTACCCAGTGTTGGTGGCCAGATCATTTTCCCAACTGGTTATTGTAAAAGAGTAGCAGAATACGTTCATCAAGCAGGAGGAGTTTATGTGGCAGATGAGATTCAGACAGGCTTCGGTCGTGTTGGGAGGCATTTCTGGGCTTTTCAGCTTCAAGGTGAAGACTTCTGCCCTGACATTGTGACTATGGGCAAACCAATAGGCAATGGTCATCCTATTGCGTGTGTGGCCACTACAGAGGAAATAGCTGCCGCTTTCACAGCCAATGGTGTAGAGTACTTCAACACATTTGGTGGTAACCCAGTATCCTGTGCTGTTGGTCTGGCAGTGTTGGATGTTATAGAGAAAGAAGACCTCAGAGGCAACGCTGTGCGTGTCGGAGGTCATCTCAAACAGCTGCTCCTTCAACTTCAGTCTAAACATCCACTCATCGGAGACGTGCGtggCGTTGGACTGTTTATAGGTATGGAGCTAGTAAAAGACAGAACGTCTAGAAAACCAGCGACAGAAGAAGCAGCACATGTTGTACGAAGGCTGAAAGAGGAGCATATAGTTATGAGCACTGATGGGCCGTGGGACAGTGTCATCAAATTCAAACCTCCGATGTGCTTTAGTATTGAGGATGCAGAGAGAGTCTCTACATGCATTGATCAAATTCTCGGAGAACTGGAGGATACCAATCAAAAGGAGAACTGCAGAAGTTGAGGtgttaaaaacatgaaaatgttcaATGCAGTGCATAGAGCAAACATGGAATTTGAACAAATAATCTTCATGTGATTTGCATTCTTGAATATTGAACCTGT

Function

symbol description
phykpl Predicted to enable pyridoxal phosphate binding activity and transaminase activity. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase).

NR:

description
5-phosphohydroxy-L-lysine phospho-lyase isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K18202 AGXT2L2; 5-phosphonooxy-L-lysine phospho-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259615.1 True 1526 mRNA 0.45 12 13342997 13346999

Neighbor

gene id symbol gene type direction distance location
rnf26 rnf26,LOC107718270,LOC107601726,LOC107690456 coding upstream 51889 13287279 ~ 13291108 (+)
cbl cbl,LOC107718267,LOC107601723,LOC107690460 coding upstream 91780 13226503 ~ 13251217 (+)
grik4 grik4,LOC108439963 coding upstream 123778 12957097 ~ 13219219 (+)
arhgef12a LOC107709137,LOC107696008,LOC107586229 coding upstream 400348 12903006 ~ 12942649 (+)
tlcd5a tmem136a,LOC107709136,LOC107601721,LOC107586230,LOC107717274,LOC107657235,LOC107696007,LOC108436527 coding upstream 440537 12898047 ~ 12902460 (+)
si:dkey-182i3.9 LOC107683825,LOC107743700,LOC107585549,LOC107718302,LOC107601733 coding downstream 32654 13379653 ~ 13382951 (+)
LOC122359520 LOC107718276,LOC107683827,LOC107690448 coding downstream 36349 13383348 ~ 13389819 (+)
LOC122358638 LOC107743729,LOC107683828,LOC107690447,LOC107601734,LOC107718295 coding downstream 36730 13383729 ~ 13385498 (+)
si:dkey-182i3.10 LOC107743729 coding downstream 43534 13390533 ~ 13393817 (+)
mark4b si:dkey-31m14.7,mark4,LOC107585548,LOC107690446,LOC107683822,LOC107743699 coding downstream 52810 13399809 ~ 13435825 (+)
G106276 ube4a,LOC107743704,LOC107718272 non-coding upstream 6320 13335308 ~ 13336677 (+)
LOC122358384 NA non-coding upstream 387190 12945077 ~ 12955807 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding upstream 562622 12773457 ~ 12780375 (+)
G106171 NA non-coding upstream 570927 12771795 ~ 12772070 (+)
G106161 NA non-coding upstream 601920 12738051 ~ 12741077 (+)
G106350 NA non-coding downstream 333181 13680180 ~ 13685449 (+)
G106354 NA non-coding downstream 345380 13692379 ~ 13692893 (+)
G106370 NA non-coding downstream 452302 13799301 ~ 13811099 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding downstream 535122 13882121 ~ 13884081 (+)
G106385 NA non-coding downstream 566580 13913579 ~ 13913790 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 494330 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1245351 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1312448 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 1970306 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 2614602 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 569574 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 610198 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1565912 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 2359514 15706513 ~ 15712439 (+)
G107107 NA other downstream 2534115 15881114 ~ 15883510 (+)

Expression


Co-expression Network