fzd4 (fzd4,LOC107600811,LOC107551868,LOC107725773)


Basic Information

Item Value
gene id fzd4
gene name fzd4,LOC107600811,LOC107551868,LOC107725773
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 23257750 ~ 23262190 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259626.1
CTAGACCTCAACCGGGCAGAACCCGCGCGACTGCGCCACGGACGCACCGGATCACGCAGAAGCCACGGATCGTTACTCGTTTAGACAGGACTCTAAGGAAAGCCCGTTAGGTTTATTCCGAAACGGGACTAACGGAACACGGCGCCGTTTCACGCTTTAACGGACCCTCGCCCTCTGGCACGAGACCGCGTCTGAACTCCGGTGAAAGCTCGCGCTGGAATTCCGCCGATAGCGTCATGGCTCGGTTCGGTTTCGGGCTCGCGCTGCTGGCGCTCGCGGCGGGGTTCGCGCACGCGTTTGGGGACGAGGAGGAGATGAGCTGCGACCCGATCCGCATCTCCATGTGTCAGGATCTGGGCTACAATGTGACCAAGATGCCGAACCTGGTGGGAAACGTGCTCCAGTCCGACGCCGAGCTGCAACTGACCACATTCACACCGTTAATACAGTACGGCTGCTCGAGCCAGCTGAAGTTCTTCCTATGCTCCGTCTACGTTCCCATGTGTACGGAGAAGGTTCCCATCCCGATCGGCCCGTGTGGCAGCATGTGCCTATCTGTAAAGAGGAAGTGCCTTCCGGTTCTGCAGGAGTTTGGTTTCGTGTGGCCGGAGCTCTTGAACTGCAGCCTGTTCCCGCCCACCAATGACCAGAACCACATGTGCATGGAGGGTCCGGGCGACGAGGACCCGCCGTTTCACGCCGTCCGGCCGATGCCGCCGCAGGAGGAGGAGTGCATGGCGCTGGGAGACGGCGTGGAGAAGTACGCGTGGGTCAAGCGGAGCGGCAGCTGCTCGCTTCAGTGCGGATACGACACGGGATTGTACCGGCGACAGTCTAAAGTCTTTACCGACGTTTGGATGGCGGTGTGGGCGGTTCTCTGCTTCATCTCCACTACATTCACCGTCCTGACCTTCCTAGTGGACTCCTCGCGGTTTTCCTATCCAGAGCGGCCTATTATTTTCCTGAGCATGTGCTGCAATATTTACAGCGTGGCCTACATCGTCCGGCTGACCGTCGGTCGCGAGCGCATCTCCTGCGATTTGGAAGAAGCGGCAGTGCCTGTGCTGGTGCACGAGGGGTTGAAAAACACAGGCTGCGCCATCGTCTTCCTCCTAACGTATTTCTTCGGCATGGCGAGTTCAATCTGGTGGGTGATCCTGACGCTCACGTGGTTTTTGGCAGCCGGGCTGAAGTGGGGTCACGAGGCCATCGAAATGCACAGTTCGTACTTCCACATCGCGGCGTGGGCCATTCCCGCCGTCAAGACCATCGTCATCCTCATCATGCGGCTGGTGGACGCCGACGACCTTTCCGGGATGTGTTACGTGGGCAACCAGAACCTGGATGCGCTCACCGGATTCGTAGTTGCCCCGTTGTTTACGTACTTGGTAATCGGGACGCTGTTTATTGCCGCCGGCTTGGTCGCGCTCTTCAAGATCCGCTCGAATTTGCAAAAGGACGGGACGAAGACGGATAAGCTAGAGCGGCTGATGGTCAAAATTGGCGTGTTTTCGGTGCTTTACACGGTGCCGGCCACTTGCGTCATCGCATGCTACTTTTACGAAATCTCCAACTGGGCCGACTTTCGCCAGTCGGCGAGGGATTCGTACATGGCGGCGGAGATGCTGCGGATTTTTATGTCTCTGCTGGTGGGAATCACGTCGGGGATGTGGGTTTGGTCGGCCAAAACGCTTCACACGTGGCAGCGATGTTCCCACCGACTCGTGCACACCGGGCGAAACAATCGCGTCAAACGGACTGCCAACGGCTGGGTTAAACCGGGCAAAGGCAACGAGACGGTTGTGTGATCGATAAGGTGGAGGCGCCCGTGCCCATGTAGCACTATTGTTCGTTCACTTTTTTTCCGCGAAACGTTCTTAAGATGATCTTACACTGGACGGACCTGGTGCAGCAGTTTTCCCGTGTAAATATGCACTACGTCAAACTCTCACTGAAGTGCCTTCGTTTTTGTGGACGAGCTACTCAACCcattctgggaaatgtagttctTCACTCCTCAGCGATCAGCGCCGTTTACCTCGCAAAACACGTCACAGCTGCCGGGAGCGCTTACGAGACTTTGTTCACATGGTGTTGGAAATGCGAAATATCCAAGCCGAAAGTAAATGTGCGACGGAGGTTGCCAACTAACTCTTTAAACTGTTGACATTTTGCCGTTTTTAACGTCACAATGCTAAAGCGGGTTTCCGCGAATGGTTTTTACAGGTCAAACTCGACAAAACGTGAACGCATTATAAGTTATTGTTCCTTTACTATTTAGTTACCGTCTATTTTTGATATGAAAAAGCTATGATGGACTTTTGTTTAGttgtcagacacacactcactctgaaTATGACAATCACTGACCGTGCCGTACGGGCCTCCCGTAGGGTCGATGAATGTACTGACCGATAATAAActctaaaacctttttaaaaaagtgcctCAAAAACTCACATGCAGGTGGTACAGTCCTGGATTTCACGAAGGACTTCTGGATCGATTTGTACATAAACGGATGTtcgtagttttatttttgtgttacgaaatgctaatttatctttgtaaaaactaagaaactgaacaaaaatgaatttatttaagaaTGCTTTTGTATCAAATGAAAGAATTAAACTTTGAAAATCGA

Function

symbol description
fzd4 Predicted to enable Wnt-protein binding activity. Predicted to be involved in Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and retina vasculature morphogenesis in camera-type eye. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; and neurogenic placode. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 1. Orthologous to human FZD4 (frizzled class receptor 4).

NR:

description
PREDICTED: frizzled-4

GO: NA

KEGG:

id description
K02354 FZD4, fz4, CD344; frizzled 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259626.1 True 2650 mRNA 0.53 2 23257750 23262190

Neighbor

gene id symbol gene type direction distance location
pdgfd LOC107689581,LOC107670136,LOC107756229,LOC107725770 coding upstream 143572 23090925 ~ 23114178 (+)
gucy1a2 gucy1a2,LOC107566890,LOC107706059,LOC107669873,LOC107725744 coding upstream 319818 22908551 ~ 22937932 (+)
cwf19l2 cwf19l2,LOC107670086,LOC107706063,LOC107728743,LOC107669872,LOC107566889,LOC107560834 coding upstream 360076 22877852 ~ 22897674 (+)
LOC122358713 NA coding upstream 400311 22856477 ~ 22857439 (+)
LOC122359065 NA coding upstream 400934 22853258 ~ 22856816 (+)
LOC122358508 parl,LOC107670111,LOC107689587,LOC107725764 coding downstream 110470 23372660 ~ 23378269 (+)
atg16l1 LOC107689588,LOC107551872,LOC107670107,LOC107600818 coding downstream 114388 23376578 ~ 23400826 (+)
cldn15lb cldn15lb,LOC107577838,LOC107725763,LOC107670109,LOC107689589,LOC107551871,LOC107578549 coding downstream 116520 23378710 ~ 23385104 (+)
LOC122359600 NA coding downstream 130565 23392755 ~ 23393038 (+)
LOC122359596 NA coding downstream 131667 23393857 ~ 23394137 (+)
G109130 NA non-coding upstream 13980 23243545 ~ 23243770 (+)
G109048 NA non-coding upstream 52246 23205260 ~ 23205504 (+)
G109047 NA non-coding upstream 54027 23203472 ~ 23203723 (+)
G109030 NA non-coding upstream 116233 23140230 ~ 23141517 (+)
G109018 NA non-coding upstream 140001 23116829 ~ 23117749 (+)
G109131 NA non-coding downstream 54992 23317182 ~ 23320626 (+)
G109161 NA non-coding downstream 91117 23353307 ~ 23374953 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other upstream 298071 22955711 ~ 22959679 (+)
G108990 NA other upstream 304237 22949140 ~ 22953513 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other upstream 480025 22775649 ~ 22777725 (+)
G108573 NA other upstream 1520063 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 1522032 21735014 ~ 21735718 (+)
G109193 NA other downstream 247242 23509432 ~ 23510315 (+)

Expression


Co-expression Network