si:dkey-118k5.3 (LOC107743635,LOC107548579,LOC107756915,LOC107685081,LOC107589709)


Basic Information

Item Value
gene id si:dkey-118k5.3
gene name LOC107743635,LOC107548579,LOC107756915,LOC107685081,LOC107589709
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15368087 ~ 15373998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259631.1
CGAGTGTCTGGCTCTGGGCGGAGATCCTTCAACTTCTTGTATTCTGCTGTTGCACAATTTACTTGTGTGTCAGGTGACTTTGAGAGCAGTACATACGGAGCATTTCGTAGTTTAGACTACCGAAAAGTTAGTTTTACCGTAGCGATGAACATTTGGCTCATTTAGTAACGCTAATCGACAGAATTGGGATTTGTCAAGATATCGTTTGTAAATAATACGCGTATGTTACTCTGCTCagagtagtttcactttcatcCGCTGTTTAATCAATGAAATTCTGCGGAAGTGAGAGAATAATGTTGCCAGGCCTTAATTAGGGAGCTCCAAACTCCCCCACAATCAGGAAGCTTTTAAAGTGATGGCTGTTGGGTCCTGTAGCACAGAGATTCAACAGCGTCGCGTGGAGCTGGTGGAGAACTACAGCGAACACCTGACACGCCTTCTGGACATACTGTTTAATGTAGGAGCGGTGACCGAGGAGGACCTCAGTCTTATTAGAGGTTCGGCTGTTCGAGGCGAGCGAGAATGTATGAGAGTTCTGCTGGATGTGCTAAATGGGAGAGGAGAAGAATCATGCAGGGCTTTCCTCTACGTACTACCAAGTGTTCAAGATGAGACCATCAAACTTGGACAGGCCAACAGGCAAGAGCATCtcaaaaaacacaaggaaatCTTGGCTAGACAGCATGGCATGGTGGACTATCTTAGCATCAGAAGGCAGACTTTGGGACAAGATGAGATGGGATGCTGGACTGATATCACCTTCTCAAGACAAGCTGGTTACGCATCGTCTTCTCAATGCCGACATGAGTCAGCAGGAGTTGGGGACGCTTTCCGGACACGAGCGGATGAGATCTGCATTTTCAAGGACGTATATGAGAATCTGCTGAGCAACCCATCAAATGGTGTGAATATGCTATCAGGAGTTGCTGGAAGTGGGAAAACCACGGTTGTGAGACGCCTGGTGCAAGAGTGGGCTGCAGAAACAAACTCGTCCAAGATTGTCCTATCTCTGTCCTTTCGTGAGCTAAATCTCATAACTCAAGAGCAGAGCCTGCAGGACCTGCTCTTGGATCACTACATCCACCTGAAACCTTTCCTGCCCGAGTTACTCAACTCAAACCCAACACAGTTTTTACTCATCTTAGATGGTCTGGATGAGTTCTGTTACCCTCTTAATTTCGAACACACTCCCAAGTGTTCAGATCCTGAGCGGGTGCAGCCTATACAGTCCATTGTGGTCAACTTAATCAAGGGAAATCTCCTTCCAGGAGTGTCCATTTTCCTTACATCGCGACCTCATGCGGTCACCAAAGTTCCTCCAATTCTGGTCAGTCAGTTTTACAGTCTGCTCGGTTTCTCTGTAGCTCAACAGAAGCAGTACTTTGAGCAAAACTGCAGTTCTTCCGAGGCCGCCGAAGCAGTTTGGGCTTCAATTTCATCCCATAAACCCCTTCTACTCATGTGCCATATTCCTGCATTCTGTTGGATTGTGTCCACCGCCTTGCATGATGGCGGCTCCTGCCTTTACCCTGATACTGTAAGTGCCAATTCAGGAAAAAAAGGAGGCCTTGAGGAAGCCAACCAACCAAACTCTTTATTAGGACCTTCTGAGGAGAACTCCAAACCAGTCACGATCTCCGAAATCTACTGCTGCTTTGTTAAATCCATCTTGCTATTCCATGTGCAAGGGCGTAGCGAGGGCACCCATCACAACAGGCTTCAGCAGGCCCCTCACGTTCTTGGCGAAATGCAGCCTATACTCAAAAGCTTGGGAGCTATGGCCTTCAAAGGCCTCCTGGAGAGACGGTTCATCTTTGAAAGCTCTGATTTGAACTCCTTTAATCTGGATAGCACCAATCTCTCACAGGTTTTCCTCTCAGAGATACTTAAAGAGGATCGAGCATCCCTCACCTTTGAAAAAGGCTTCCATTTTATCCACACCAGCGTGCAGGAGTTCCTCGCTGCTCTGTACTATGTTCTCCAGTCACTCTCAGGATCAGATCCGTTTTCAGGCCTCAAACCAAGCACAGGCCGCTATCTTCAGTATGCATTTAAACACATGGCATcagctttaaataaattcagcagACCGCAGCGTCTTTTCTACAGACACATTAAGAAAGCCCTGCGTTGTGGTGAACGACATCAGTCTGGACACATGGATCTTTTCAGCAGGTTTGTATGTGGCCTGCTGGTTCCCAGAACACGTCTCATCCTAAATGGATTTTTTCCTGATGGGCAGAATATGCATCTGCTTCGTTGCCAGCCTTCTCCAGACCCGACTccaccttttcttctccatcTCTTACACTCTCAACTCCAGAGCTCCACCCTCAGCCCAGAGAGGCAGGTCAATGTTTGTCACTGTCTGTATGAGGCCCAGGACCCCGGTTTGTCAGAGCGGCTGCAGAGTTGGATGAAAGTTCTTTCGCAGCAGGCCACAGATCGGTCTGGTTCGGTAAACAGGGACTGGAGCGAGCTGGCTTTCCTGTTACAGCTCAGTCCAGACCTTCAGGTTTTAAATTTAGATGCTCAAGGACTTGATGGTGACGGACTACGCCGGCTCCTACCAGTCCTTCCACTTTTTTCAACGCTTAGCCTAGGTCAGAATCCTCTTGGTTTAGATGGAGCATCTGTATTATCCCTTGTTCTGAGAAACCCAGATTGTCGTATTCAGAGGCTGTGGGTAGTTGCGACAGGACTTGGCTGTGAAGGCCTGAAGATTCTTGTAGAAGCGCTGAAAGAAAACCGCACTGTGACTGATCTCAGAATGGCCATCAATAAAATTGGAGACGTCGGAGCTGGTTATCTTGCAGAATTGTTGACAATAAATCGCACACTGACAGATATCAGGCTTCGTGACAACCTAGTGACAGACAAAGGAGCAGAAGTCCTCATGGCTGCCTTGAAAGAGAACACTACATTGGAGTATCTGTGGTTGTTTGACAACAAGTTGACCAAAGATGGCGTCAAGAAACTCAAGGAATTTGCGAAGACCAGACCAAACTTTGACATTAAAGCTTGCATCTGACCCCCAACCAGCAAACCAGCAGAGCAGAAAATGGTTCATgccaaacattttcatttatacattgTATTCATACGTTATTTTACATATTGGTGCATTACTTTTTGATACATTACTTTTAATACGTATCAGATTATTAGACAAattaatagttcacccaaaagaaaACACCGTCCCACACCGtcgttttgattttattataataaaagtaatttagttCGGTGAGAGAACCGACAATTAAAATGTGAACAAGACAATGTCGGAAGAGATTAAAAACGAAATGCAAAAGcacctgttaaaatatttttatacctATTTAAACTTCGTGTaagatatttgttattttatattaggcaTATAGCATGGTCTATTTTTATAAATCGCAcggttcatttttaaaaccgaAACTCAAATGAACCCCCACCAGTGTGGTAGCAGTATTACCGATTAACCCACAAACCTGGTAAGGTTACTCAGAGAACTTTAGCATTACATAATTTGCTCACCAACAAATCCTCTGCAacgaatgggtgccatcagcgGATAAATATAtcgcaataagcagcaagtaaTCAAAAAACTTAACTCTATCAATTAACGCTTTCTGAAGCAAAAAGCAGCATGCTTTTAATCGAATCTATCATTAAGGTGTGTTTCACTATAAACGGCTATTCCTTTAACGATTCAGGCAACtactgccctctgctggacgTTTAAGGAGCTGGTTTTTGTAGGCTTTATATATACGGTAGGCTGCAATATTTCTAGTTGTTgagttttttctttataaaaacactgaattgcatttatttattttgtgcaataatttttttacagcttttatcTAACACCCACACAATCAGATCTGACTTAAGCTTATAGATGTATGATCAATTTTGAGGGACCTAAATGACTTCTCAACACACATCTGTTTTTCTTGCACGTCTTTATAAATGATCGTCTTCCTTCTCGATTCTGCTACAGTGTTTCAGACCAGTTCGACAATGTCTATGCACCAGTTATTGCCCATTTTGTGGGTGCTTTTTACATGCAGAGCTCAGGGCTCCTCTTAGATGCTTCATAAACGGAAGTAAAAATGTAAGTGTAAAATACACAAAGCCAGAGTATTCTTTggtcatgcatttattttaacgaTACCATGTGAAACcgcacttttttttatcttacatAATGGTGAAGATATCTAAAACCTacctagatagatagatagatagatagatagatagatagatagatagatagatagaacgagcTTGACTACATTGTGTGGAAAAACTTCTGAGCATGGTTTTCATTAATTACTATGCTATCCATGTCACATAATTTCTacaattgttttctttctgaaagttgcataatatacataatataggTTTATGCATTGTTTGTATCACTGTAACATCTTGAAATGTGAATTGTTATAACAAGTATAATTGCCTACCAATGCTtacaatgcaaaatgcaaagtgCTGTTATGCAATCATTAAAACAAGATGTACAAATAGATGTCCAATAAACATTATATGGATTCTCCA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259631.1 True 4587 mRNA 0.43 8 15368087 15373998

Neighbor

gene id symbol gene type direction distance location
myo1cb myo1c,LOC107756890,LOC107743634,LOC107685083 coding upstream 321 15329872 ~ 15367766 (+)
vtna LOC107548575,LOC107669719,LOC107685077,LOC107589740 coding upstream 68804 15294232 ~ 15299283 (+)
slc46a1 slc46a1,LOC107548560,LOC107669722,LOC107743641,LOC107589753,LOC107685182,LOC107757459 coding upstream 80719 15282512 ~ 15287368 (+)
unc119a unc119a,unc119,LOC107548572,LOC107757471,LOC107669755,LOC107743736,LOC103043060,LOC108431312 coding upstream 102344 15256926 ~ 15265743 (+)
crybb1l3 crybb1l3,LOC107548571,LOC107743737,LOC107669754,LOC108426910,LOC103042748 coding upstream 113380 15251164 ~ 15254707 (+)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710,LOC107669718 coding downstream 885 15374883 ~ 15394089 (+)
pitpnaa pitpna,LOC107743636,LOC107669737,LOC107548584,LOC107685084,LOC107756865 coding downstream 21003 15395001 ~ 15401953 (+)
ankrd13b ankrd13b,LOC107743633,LOC107548583,LOC107669714,LOC107756832,LOC107589713,LOC107685087 coding downstream 50341 15424339 ~ 15447473 (+)
nova2 nova2,LOC107669728,LOC107589717,LOC107685091,LOC107756760,LOC107548550,LOC103039352,LOC108440380,LOC108277822,LOC104927796,LOC100701682 coding downstream 142106 15516104 ~ 15567549 (+)
LOC122359367 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding downstream 250218 15624216 ~ 15636880 (+)
G106873 sarm1,LOC107548548,LOC107669752,LOC107743642,LOC107685076,LOC107756984 non-coding upstream 76924 15290829 ~ 15291163 (+)
G106872 sarm1,LOC107743642,LOC107669752,LOC107548548,LOC107685076,LOC107756984 non-coding upstream 77601 15290156 ~ 15290486 (+)
G106863 NA non-coding upstream 122273 15245605 ~ 15245814 (+)
G106860 NA non-coding upstream 128375 15239383 ~ 15239712 (+)
G106859 NA non-coding upstream 129141 15238617 ~ 15238946 (+)
G106898 NA non-coding downstream 23724 15397722 ~ 15482672 (+)
G106924 NA non-coding downstream 128560 15502558 ~ 15571162 (+)
G106926 NA non-coding downstream 136319 15510317 ~ 15511110 (+)
G106941 NA non-coding downstream 263176 15637174 ~ 15638029 (+)
G107113 NA non-coding downstream 520135 15894133 ~ 15894624 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 439862 14912911 ~ 14928225 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 1406280 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 1450825 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 2519420 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 3270441 12093957 ~ 12097646 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 332515 15706513 ~ 15712439 (+)
G107107 NA other downstream 507116 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 630871 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 715759 16089757 ~ 16236341 (+)
lyrm9 lyrm9,LOC107756492 other downstream 1139310 16513308 ~ 16514221 (+)

Expression


Co-expression Network