LOC122359367 (LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739)


Basic Information

Item Value
gene id LOC122359367
gene name LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15624216 ~ 15636880 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259657.1
TATAAAAGCAGAGTAGCAACTCAGAGAGTGAATTTTGACAAGATCTGTATCTGTGTGGACCCGGACTGCCTTAGATTTACAACCTGGGCCTGGAACCACCGCATACAGAGAGGCAGGTTGTAGGGACGATGTCCTCTGAGCCCCAGGGCCTGTCTTTCCCATCTgtaagcagcagcagcagcagctcaccCATTCCTTCGCCAGCCGAACTACAATCTTTTGACCATCTAGGGTCACCCTGCTTTCAGATGCCAGAATCAAAGTGTCACCAGAGCAATGTTGGAGAAGGGTTTGCACCGTGCTCCCAAAGAGAAAGCATTCCCTACAGGCAGAAGAACGCTGAGCGCTTTCGTAGACACAGCGTAGACGGGAGCCCCGTTGGACGAGAGTCTGGCCTAATGGAGAACAGTCACTACCATCCATACAGGCGCCAATGCAGTGAAGGGACCATCAGTGAAGTTCAGACACTGAGTTGTCTCAGAAGAGCTGGACTCACCATGGATGACAGAATGGAGGAACAATCCTGGACTCCATTAAGCAATGATGTGGAAAGCACCAGTATCATGGGAACCCAACATACCTACAGTGAGCCTCAAACGAGCTCTGAAGAACCTCCTGGCTACACGGCAGTAGACCATCAGACCTACAGTCCCATCAGTCCTCTACAACATCAGTTTTACTCTTCAAGAGGAATAGACACTGTTTCTCACTACTATAACCAAAGCCTCTCGTCACAAGCATCTCAAGACAATTCTGTCCAGACGCTCTATCCTAAACCTGTCTACTCTTACAGTATTCTAATTTTCCTGGCTCTGAGGAACAGCAAAACAGGCAGTCTACCAGTAAGTGAGATCTACAGCTTCATGACGGAGCATTTCCCATACTTTAAGACAGCACCTGATGGCTGGAAGAATTCTGTCCGACACAACCTCTCTTTGAACAAATGTTTTGAGAAAGTGGAGAACAAGAACGGGAACTCCTCCCGAAAGGGTTGCCTGTGGGCCCTGAACCCTGCGAAGGTAGAGAAGATGCAGGAGGAACTTCACAAGTGGAGACGTAAAGATCCCCTGACTGTCCGGAGGAGCATGGCCCGACCAGAGGAGCTGGAACGCCTTCTTGGGGAGAGACCTGAAAAACTGAAGTCTCTGGGAGCTCACTTCAGTCTATCCAGCAGCCATACACATTCTCAACCTTTAAGGGTTGCCATGCATCCTGCGTGCGGACACCAGCCTGTCCCTCATCAGCAGCCTCTCTACAACCCTTTACCCTCTCAAACTGTCATCCCGCCTCCCCCCTACTTATGCCCAGACCCTTTATCCTACTCATACTACCCTCCTGTCACCCGTCAGCCCAGTGCCGGGCATCCCTCCAGCCCCAGGATAGGCTGTTTAGATTCCCCGTTACCAGCACACACACCACCGAGTTACAGCAGTGCCTTGCAGGCTGCTCACAGCGCTACAGCAAACATGCAGGAGCTTCTTCTGGACGGGGAAATCAGTAACGATGTCGATGCATTAAATCCCAGCCTCACAGACCTACAGCTACACGGAAATCTTTGGGAGGAGCTAAGGAACGACAGCCTTGCTCCGGATTCACTGGTTGTCATGGACAGTCTCAGTCAAACACGGGACAGCGTGGGGGTCTGTGGCGGTTTAGAGGAGACTGACGGTGGGGTGCAAGGCAGCATTTCTGAGCTTTACCTCAGTGGGCTCTACACAGCTCCCATTCCTCTGCTATGAGAAAGTGTGTTGTCATCTTCTCTTTCCAAAATAGGTTGGTAACGTTTTATAATAACTACACACTATAAATCATTGAGcaagcattagtaaatagtcatttcatcctttataaagcatttttcattagtaagcagttataaataaagctataaatgccttgttcttgATATATTAGCATATCTATTACAAAAGAGATTTAAAGGCTGCCTTCCTaacagaacaaataaacaaacacaacacagagaAATACAGAGCTATTCATTTTAAGATGCAAAGCAATATGCAACTGCACAACTGCagaggtttgtttttcatttattaagtgTAGAATTGTACTGTTTCATATTTtgcatcttgaaaaaaaaaacctgcattgCGTTTGTTTAACTTTTCCGTTAAGGAAGGTAAATGAGTCTTTACAAGGTATAACTAGTCCTCACTTCAGATAAATAACGTAATAATTTCGAAATTATAAATTGATCATTAATAAtgtatgaaaatgcatattgcataatataattggaacaatggtttttaaAGGACTAATactaatgcttaactaatgattcatagtgtgtagttattataaagtgttaccaaaaaaatgtatatgtttgaaTGACTAAAAAGTATGATTTGTATGCTAAAAGCAAGTGTTtgtgcaagtgttttttttaagtctaaatgtgtttaaattggTTTTCCTGGACATGCATTTGCCATGGCACCCCCTGGGGGGCGTGGTTGCCTTTTTTATACTTTCTTTCCATAGCAACACGCATTGAAAGCGCTACAAGTTAAAACAGATCTCCTGAATTGCAGGATTTTACTAGATATCTGCAAACATAGGtcacagttgtttttgtttgacaaAAATGGTACAGTACCCAAGTTGAGTTCATCTGATCTATTGCACTACTAGAACTAAATCTTAAGTCAAATACATATATGATGTCAAAATATAAGCATTTACGCTATAATAATACACTGTATACAACAGATCTATGCATTTTGCTGTATTGGAACTGATTTGAACTTGTAGTGTATAGCGatgtttattactgtaaattattatttttgcccttagttgtttttatgtattattcttCTGATTACCTGAAGAACTGTTAAAAAGTTTGTGGTTagtctcatttttaaaatgaatggatcaaaacagttttacattgctacaaaaatgtatttcaaacaaatgctttttttcgtTATCGatttata

Function

NR:

description
PREDICTED: forkhead box protein N1-like

GO:

id name namespace
GO:0048538 thymus development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259657.1 True 2975 mRNA 0.43 9 15624216 15636880

Neighbor

gene id symbol gene type direction distance location
nova2 nova2,LOC107669728,LOC107589717,LOC107685091,LOC107756760,LOC107548550,LOC103039352,LOC108440380,LOC108277822,LOC104927796,LOC100701682 coding upstream 56667 15516104 ~ 15567549 (+)
ankrd13b ankrd13b,LOC107743633,LOC107548583,LOC107669714,LOC107756832,LOC107589713,LOC107685087 coding upstream 176743 15424339 ~ 15447473 (+)
pitpnaa pitpna,LOC107743636,LOC107669737,LOC107548584,LOC107685084,LOC107756865 coding upstream 222263 15395001 ~ 15401953 (+)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710,LOC107669718 coding upstream 230127 15374883 ~ 15394089 (+)
si:dkey-118k5.3 LOC107743635,LOC107548579,LOC107756915,LOC107685081,LOC107589709 coding upstream 250218 15368087 ~ 15373998 (+)
LOC122358640 cryba1b,LOC107581934,LOC107731981,LOC107713158,LOC107587221,LOC107704801,LOC107675182 coding downstream 7683 15644563 ~ 15647849 (+)
LOC122358489 LOC107756729,LOC107589721,LOC107685095 coding downstream 22108 15658988 ~ 15661655 (+)
gipr gipr,LOC107548593,LOC107714193,LOC107685094,LOC107756746 coding downstream 163849 15800729 ~ 15819146 (+)
clip3 clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746 coding downstream 189281 15826161 ~ 15837908 (+)
si:ch211-137a8.2 LOC107714189,LOC107669729,LOC107548595 coding downstream 208694 15845574 ~ 15865410 (+)
G106924 NA non-coding upstream 53054 15502558 ~ 15571162 (+)
G106926 NA non-coding upstream 113106 15510317 ~ 15511110 (+)
G106898 NA non-coding upstream 141544 15397722 ~ 15482672 (+)
G106873 sarm1,LOC107548548,LOC107669752,LOC107743642,LOC107685076,LOC107756984 non-coding upstream 333053 15290829 ~ 15291163 (+)
G106872 sarm1,LOC107743642,LOC107669752,LOC107548548,LOC107685076,LOC107756984 non-coding upstream 333730 15290156 ~ 15290486 (+)
G106941 NA non-coding downstream 294 15637174 ~ 15638029 (+)
G107113 NA non-coding downstream 257253 15894133 ~ 15894624 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding downstream 363335 16000215 ~ 16002131 (+)
G107141 NA non-coding downstream 432604 16069484 ~ 16069741 (+)
G107145 NA non-coding downstream 502933 16139813 ~ 16167005 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 695991 14912911 ~ 14928225 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 1662409 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 1706954 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 2775549 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 3526570 12093957 ~ 12097646 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 69633 15706513 ~ 15712439 (+)
G107107 NA other downstream 244234 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 367989 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 452877 16089757 ~ 16236341 (+)
lyrm9 lyrm9,LOC107756492 other downstream 876428 16513308 ~ 16514221 (+)

Expression


Co-expression Network