c2cd3 (c2cd3,LOC107752384,LOC107694017,LOC107758810,LOC107577194)


Basic Information

Item Value
gene id c2cd3
gene name c2cd3,LOC107752384,LOC107694017,LOC107758810,LOC107577194
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9501435 ~ 9515858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259670.1
CGAGCCGTTGCTCAGCGGTATTATGTTTGTTAATGCAACTGTCAACAGAGTATGTTAGCTTTGCttcattaataacattattaagtACACTCTCGATGTGAGGAATGAAGAATAAAAAGGCGAAACCCTCAAAGGGTGTAAGCAACAGAAAATTAGTGCTCAGTGATGTGACTCCATCCACCAGCATCCCTCCTCTGGTGGAGGGTCAGCTGAGGTGTTTTCTGAGAGTGACGGTGAGTAAAGTGCTGTGGACCATCACCAGACCTCCTCCTGTGACTCTGATCAGGCTCAGATGGTGGGGAGAGTCATCTCATGGCACCTTCTTCAGGCCCAGAGATGGGCACGGTGAACAGAAAGGGATCAAATCGACAGCCCGCTTTCCAGTTCGATGTGGGCCCAAACAGTTGACGTCTTATTTGACAGATATGGGCTCATTGGTGCTGGATGTGCTTACAAAGGTTAATCATCTGCCCATAGCTCGAGCTCAAATCCCCGGGATTGCCCGACTTTCTCTGTCTCACTCCATAAATGGATATTTCACTCTTGTTTCCCCATCATCAGAAAAACTTGGAGAGCTACAGGTCACACTTGTACTGGAAGCGTTAACTGAGGGATACGACAGCAGTAGTTCAGTTCCCACAACCGATATGAGCCTCGACGTACGGGCTCCTGGAGTAACACCTGACCACAACATGTCTGTACATTCATCCCTGGATCGGGCTCTCCCAAGTGTGAAGGAGACAGCTGGCAGCAGCTCTGGCTACATGCCtagAGGAAAGGATTACTTGTATTTTCAAGAAAACAATAACGTCATACCGGATTCTTCTACTGGAAAACATAAACCTGGTACTGCCCAAACTCTTTCAGCAAATATCCACACACCTGTTGACCTTTTGTCAGTTCTTCTGGAGCGTGGCAGCAAACTGAGAAATGCTATGGTGGTTTCAGCCTTGAAATCCGATGTGGCATCAGATGTTCCTCTGAAGGACATTCCCCTGCCTCTCTCCAAAGACAACACTGATGCCTTGCCAGCCAGGCCCTCATCGGGACAGTTTCTGGAGAACATCCTTCAAGCAGAACACCAGCATCCTGTTCAGGACCTCGAAGAGCCAAGTGAAAATAGAGTCACAGAGGACATGGCTGTGGATCTGCTGCTGGGAAGTGTTAGTGGATCAGTGCTGCAGTTCTGGGATGGAGAGGGTTCTTTCCCAGATTCTCTTTCTGGTCACAGTAGTGTGCTCATGGACAGTGAACTTAACGACCCTCAGTATGATCAGAGTCTTCTGGAGAACCTCTTCTACAAAGCTCCTatgtcaGATGAATGCTTGGAAGAGGAGCATCAAAAGAAAGATCCAGGAGAGAAGCCAGTTCACATAAGACCAACTAAATATGCCCAGCTTGATTCTGAAGATGTCCAGCATTCAGAAGCAGGAGATGATTTCTCTGGACTTAGCATGGATAAAATATCCCTGCTTGGAGATATTCGTTTTGCCAGGGCCACCATCATCGAGTTAAAAATTTCCACTGAGAGTATTTCAAGAAGCCTCTCTAAAAAAGGAAGACCACCTCGCCCCCTCAACACAAAGAAATGCTTTTATATCGTAGAGTACCTCTTTCCACTGGTCTCTGCTGGGTTTGAGGATGTTCAGCTTGTACCTTCAGAGATTACAAAAGTTGTCTCTAGTAAAGTAACAGAGGGCGtcGTGACGTTTCAGCACCAAAGTTTGTTTCCTGTGAGGTTCAGTAGGTCATCTATTAAACAATGGTGGGAGATGAACGTCACATTCAACATCTACTCCAGAAATAGCCTTCAAAAGACAcccatTCTCATTGGATCAGCAATGTTTCCACTGAGCTCCCTGATGCAGAGTGAATCGCTGAGCATTTCTGCTGTCCTTCCTGTTCAAAAAACAGATGGAAACACTGATAAACAAGCAGTTGGTCCCCTGAAGgtgtcatttgAATTAGCAGCAGACAAAAATGATTTCTCCACCAAAAAGAGACCTGCGAAACGAATGCTAAGTCCGACAAGACCTCCCCCTTGTCATTTAACTGAAGAGCATGATGGGCCGAAGGGTTTATGTGTGACTGATCACAGGAGAGACCCATCTCCTAGTGCAAGCGTTTATCAAGTCCAGAGTATCCTGATACCTCCAACCAGATCACGATCCACATCACCACGTGTCAGATACCAGAGCTCTCTTCATGAGCCTCTGCAGCAGGAAGTAGAGGAGGAGACTGAGATTTTGCTTCATATGTTGCTCATGGTGCCCGATGGGAAAGATTTTAACTGTGCACCTATGCAGCCTAACATCTACTTGAACTGTAAGCTCCTCGGGTCAGATGAAACCGCTCGGTCGGCGGTGAGCTGGCGTCAAAAACATCCATCATTCGGCTTTATCCAGGTGGCTCCAGTCACACTGACCAGCAAACTGCTGGAGAGAATGAAGAACAACATGATGGTCATTGAAGTTTGGTTGAGGGCCAGTAGTTCAGACAATGATAAACTTCTTGGTTTGGTAAAACTACCTCTTAACCAGTTCTACATGTCCTTCAGAGAGCCCAAGATCACAGAGCTGCTCCTGCAGTCTCAGTATCCAGTGGTTGGAGTGGACAGTTTTATGCCAGTGGTTGATGTGTTCAGCGGAAGCACTCGTGGAAACCTCAGGGTGTGTCTAGCGATGGGTTTAGCTCAGCAGATCACGGCACTGCAGCGAATGAGGGACGGCGAGCAGACCCACGAATCACCGCTGCATCGACCAGCGCACATGCTAGACCACCGGCCTCGAGTAGAAACCAAGGCCAGTACCACTCTGGATGTCCTGCGTGAGCATGTCTTCATGGTCCGAGTAGAGCGAGTAAAGGGTCTGACACCTCTGCAGTCCACAGTGTGGGGAGAAGCCGACTGTTACGTCCAGTACTCATTCCCTGCGCAAAATGAGTCGATAGATGACACGGACCCACACGTTGTGGAGAGCaATGTGGAGCTTAAGGCCTACCGCACTGAGACCACTCTCTGCGTGCCTGACCCTGTGTTCGGACATAATGAGACTCATGTCCTGCTGGCTCCTCCTGATGTCCCAGTGCAAAGAATCCTGCTGAGCTCACTGGCCACTCAGGGGCTGAAGAACGGTGGAGGGGTGCAGTTTGAGGTCTGGTGCAGGTATTATTATCCAAATGTCAGAGATCAGCTGGTAGCCAGAGGACTGCTGCCCATGTCCAAACTGTGTGCCATGGTAACCATGCAGAAACAGGGTCAAACCGATGAACAGCTTTTCTCCCTTCCTCTGGTACCAAGAACTGACCGACCTGTTGAAACACAGCCTCAACCCCCTGGGTTGCTTGAAGTGAGCGTTCAGTACAAATCTCGACCAATGAGGAGTGTGGGAGTAAGGAGTGGGGTTGTGCCGACCCGCCGAGTGATACTGGTTGTGCATGTGCATAGAGCGTCCGGGCTACAAGCTCTGGCCAAAGCTCTTGCAGATGCAGACAGCTCACTTCTGTATTACTCTGAAGTGGGGCTCAACTCCTTCATCAGTATGCAGCTGTCCTTTCTGCCGGACAGTGAGATTCGAAGCACGCGTGTGGCTGCTCGAAGTTTCTGCCCGGAGTTTGAACATCATGTCGAGTTCTGCTGTAACCTGCTGGTGCAGAGAAGCAGCGGAGAAAGCGTCAGCCTGGCTGAACTCCTGCAGGAGGCAGTGGCCATCTTCACCATTTACAATAGAGACACACGCAAAATGGCTGATACCACAAGATTGAAGGACACTGTCTTGGGCACTGTGAAAATTAGACTTGCAGATCTGATTCATAAAAGAAGTGGCATATCTGGCTGGTACAGTTTCTCTCTACCTCAGAGCACAGCTCACAGTCTGACCTCAGCAGGAGGCCTTGAAGTCTCCATCAGTTTTTCCCATCATACAGATAGAGAGCGGGTCATCAGTTCAGCCCGTGGACTAGGATGGGACGTGGGCCAAGACAGCGAAGATGAGGCAGATATAGAGGACGAAGATACTTTGGAAGAAAGCGCAAAGTCTTTGGCATTATCATTTTCTGTGCCTAGAGCGTGGCTGCCCATCCATTGCCTGCTGCTGCCAGGACATGAGGAATTACAGCGCTCCACCTACTGCTACTACAGATACAAGCTCTACAACCAGCAGACCTTCTGCTCTGAGCTTAGACATCCCGTTCCAGACGAGAGTGAAGGAGATGAAGGTTTGGCCACGGTGGCATTTCAGGGAAGCAGAAGCGTGGTGCTGAGGAGGACTCAACCCCTGCGCTGGTACCTGAGGGAGGAGAGGATGGAGGTGCAGGTGTGGGTGGCGTTTGGGAAGGAGAAGAGAGCCCGGCCTCATAACGCTGATCGTCTGGTGGGCTCTGCTTTTGTGGATCTCTCTGCTTTTTCTGGGAACTTGAAGCCGCATCAAACTATCAGCGGTGTGTATCCTTTGTTCAAGCGCTCCGCTGTAAACCTGAGCGGTGCTGCTCTCAGAGTCCATATCGCTGTCACAACAGACCCTGCAGCCCATGAGCCTCAAGTCACTGAGGAGCTCAACAGCTCAGTAGAAGATGAGGAGGATGGAGACCTTCCCGCCACAGGGCTGTCAAAACCATCTCAATCCCCCAGAAAAAAGCTGATCAAATCAACCGTGAACACTGATGCTCCACCCTCCAATGAAATCAACGATGAAGACACCTTCATAGCCAACATAACTGTGGACAGAGCCATGCATCTGAGTCTGAAGGGTTGTCCTCTCGCTGAGCGCGGTGGAGGATTGCCTAGTTGCTGTGTTTCATACGCCACAGCTGATGCCCCGGACTCAGTGACCACAGCTCTGATCAAAGACAGCGACTGCCCCGTGTGGGACCACCAACAAGGATGCAGgctGTCGAAGGAGCTACTTTTGGATCCCCAGCAGTCCTTGGTTTTTAAAGTTTGGCATAAAGGAGAAGTCGAGAGGGTGATTGGATTCGTGTCTGTTGACCTGTCGCCACTTCTGTCAGGGTTTCAGTCAGTTTGTGGCTGGTATAACATCACTGATTTCAGCGGGCAGTGTCAGGGGCAGCTGAAGGTGTCCGTGTCTCCTCTGAGGGCAGTACAGGAACTCCGGGCACAAAGACTGCCTGCCCACGAGACCACTGCTCCAGACTCAAGTGCTCTCTTTAGCGCCCTTCCACTTTGCTATCAAACAACGGCTACTTACAGCAGCTTTCCCAGCCACATCAGTCGATTCTCAGAGCAGAGGATCAACACACCGCCTGAACAGTTTGAAAGACTGCTCTCTGACAGGTCCAGTGCGACGGATCGCCACGATGAGCACATGGACAACATAAGACTGTTCCATCAGAGTTTGCATGAGGAAGAGAACGTGTCCCAGTCCTCCTTAGTTGGAGATTCCCACCCATCCAGTTCAACACTCTTCTCTGCCCTCAGgaAAAACCTCAGTGAACTGGATGATATTCAGAGGTATTTCAGCCGAAAGTTGTCCACTCCAGCATTCCCGAAACTGAATGAGCTGAGAGGAACCTCCGGGCTGGACGAGCACAGAGACTCAGAAGCGGACACCACTCAACTGCTGCTGAAGTCCAGTCAACTGGTGGGAGAGGTCAATAACATCATAAAAGgTTTAAGTGAATACCCGACAGAAGAGGCGACAGCTCCTCATAGAAGCTCTGCTGCTCTTGATGTGGTTGAGGAGCGCTTAACATCTGGAATAGATCAGCTGATTTTATCAGAGTCTGATAGCTGTGAGAAAGAGCCACGCTTTCATAAAGAATCAGACATGACGTcggaagatgaagatgaagtcTCCCCCATCAGCTCTCCTGCTCCTGCACAGTTCAGACAGTCACCAGCCGCTGCTGAAGGTGAAAAGATCTACCACAGCTCCAGCGAGCACTCGTCTGATGAAGAGGAAGACGAGGACGAGCATGAAGACTTTGAGGAAACTTTAATACAGCCTCGAACTCTTAATGAGGTCACTTCAGTCACAGACAGAACCAGCCCTTGGACCAGCCTACTGTCTGACCCAGATATGGGATCCCTGGAGAGTCTGGAGTCAGTGCAGCATCACGCTCACGACGACGCCATCCACACTCACAGAGAGGAAAGAAGCAGCAGAGAAATCCTTCCAGATTTTAACCAGCAGACATTGACCGCAGAATTGCAAACCGTTGATTCTGATTCAGATATCTGTGATGGATCTGAAACCGATCTTGATACACGTAGGAGTGAATGCGCTATTGCTACAGATCATCGGGAACAGCAGCCCTCTCCAGATGGTCTGGATGGAGATGGTCCTCTTTCTAGTATTAGTGAGGTGGAAGATTATGAACAAAGTAATAGCGGACCTGAAGAAAGCGATGAGAGGCCAAACGCGCCTCCCTCAGGAGAGTCTGGTTCTGAAGCAGATGATAGGACAGCAGAACCTTTAGAATCTGTAGAGATTCCAAATTTCTTCCTGTCCGCTCACCATCTGGAGGCGTCCATGAGGGCTTTGAGGATGGCGCCTGTCTTTCCATCGGCAGCAGCTGAGTCTGAAACCGTAAATCCTGGAAATCCATATAGAAGAATGCCTCGAACGAGACCAAGCGTCCCTCCATCACAGAGAAGTGAAGAGACTAGAAGAATTGCGAAAATATTTGCTTCCAAGTTTACAGAAGAACGTTAATGCTTTCGTTCTagatttctgtttgtttgtttgtttgtttgtttgtttgtttgttttatgtttaaagtaTGGGATCCTTATTTATTTCTTACCTGATGCAATAtgttatatacttttttttaacagtaattttaataatgcaagcattaaaaaaggttttttatttgcagtaaTGAACCTATTTTTCTAATAAAGAATTTTGTATTTC

Function

symbol description
c2cd3 Predicted to be involved in centriole elongation and cilium assembly. Predicted to be active in centriolar satellite and centriole. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human C2CD3 (C2 domain containing 3 centriole elongation regulator).

NR:

description
C2 domain-containing protein 3

GO: NA

KEGG:

id description
K16751 C2CD3; C2 domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259670.1 True 6879 mRNA 0.49 34 9501435 9515858

Neighbor

gene id symbol gene type direction distance location
med29 med29,LOC107752392,LOC107694027,LOC107592747,LOC107758885,LOC107672381 coding upstream 785 9499090 ~ 9500650 (+)
si:ch211-149e23.4 LOC107758610,LOC107672406,LOC107582615 coding upstream 7383 9484603 ~ 9494052 (+)
nectin3a LOC107672414,LOC107758600,LOC107694025,LOC107752386,LOC107588797 coding upstream 32552 9438016 ~ 9468883 (+)
diabloa LOC107752388,LOC107588772,LOC107694024,LOC107758583,LOC107672415 coding upstream 64639 9434409 ~ 9436796 (+)
LOC122359294 si:ch211-24o8.2,LOC107672367,LOC107582655,LOC107758805,LOC107752394,LOC107694021,LOC107588807 coding upstream 69111 9429444 ~ 9432324 (+)
si:ch211-105f12.2 si:ch211-105f12.2,LOC107592752,LOC107582611,LOC107752380,LOC107758659,LOC107672390,LOC108410847,LOC107694022 coding downstream 21256 9537114 ~ 9539923 (+)
ca4b LOC107672388,LOC107758897,LOC107694023,LOC107752374,LOC107592803,LOC107578356 coding downstream 30099 9545957 ~ 9549061 (+)
LOC122359050 LOC107672392,LOC107582610,LOC107758683,LOC107752375,LOC107694033,LOC107592755,LOC107672389,LOC107582609,LOC107758673 coding downstream 33824 9549682 ~ 9555407 (+)
LOC122359051 LOC107582609,LOC107672389,LOC107758673,LOC107694033,LOC107592755,LOC107672392,LOC107752375,LOC107582610 coding downstream 39698 9555556 ~ 9558190 (+)
zgc:174895 zgc:174895,LOC107672400,LOC107657114,LOC107752376,LOC103023064,LOC105911024,LOC108443501,LOC108278204,LOC106612798 coding downstream 50446 9566304 ~ 9568508 (+)
G104974 NA non-coding upstream 108866 9392141 ~ 9392569 (+)
G104973 NA non-coding upstream 109582 9391457 ~ 9391853 (+)
G104937 NA non-coding upstream 251027 9249947 ~ 9250408 (+)
G104925 NA non-coding upstream 271248 9229959 ~ 9230187 (+)
G104875 NA non-coding upstream 581271 8917987 ~ 8920164 (+)
G105002 NA non-coding downstream 26508 9542366 ~ 9543202 (+)
G105101 NA non-coding downstream 182216 9698074 ~ 9698409 (+)
G105106 NA non-coding downstream 190350 9706208 ~ 9706530 (+)
G105112 NA non-coding downstream 218345 9734203 ~ 9738624 (+)
G105109 LOC107727913,LOC108415199,LOC107672419,LOC107582599,LOC107714247,LOC107661107,LOC108277446 non-coding downstream 248013 9763871 ~ 9803117 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other upstream 220966 9252508 ~ 9280469 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other upstream 740019 8756327 ~ 8761416 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other upstream 748617 8747803 ~ 8752818 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other upstream 867464 8628860 ~ 8633971 (+)
G104466 cyp2y3 other upstream 1083971 8401311 ~ 8417464 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 97 9515955 ~ 9523974 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other downstream 33894 9549752 ~ 9552128 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other downstream 72931 9588789 ~ 9623972 (+)
G105011 NA other downstream 153776 9669634 ~ 9673345 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other downstream 187568 9703426 ~ 9715689 (+)

Expression


Co-expression Network