lim2.3 (lim2.3,LOC107748598,LOC107699889,LOC107597599,LOC107662761,LOC108435296,LOC103047043,LOC108277938)


Basic Information

Item Value
gene id lim2.3
gene name lim2.3,LOC107748598,LOC107699889,LOC107597599,LOC107662761,LOC108435296,LOC103047043,LOC108277938
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11711505 ~ 11713995 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259707.1
GTCTCCGCTCTCCACCCAGCTCCTGTCCCCCTCACAAAAAATAACTGCCAACAGCTCATGGAAATCTGCCTGCCTGGGCATAATTGAGCTTCACACTATTCAGTctgatcattttttttggtGGGAAAAGAGTGTGTCTGTAGGTGCAGGATGTACAGCTTTATGGGAGGTGGATTGTTTTGTGCAGGAGTGGGAAACATACTCCTGGTGATTTCCACCGCCACGGATTACTGGATGCAGTACCGTCAGTCTGGCAGTTACATGCATCAGGGCCTGTGGCGCTACTGTGTACCTGGAAAATGcatgacacacacagacagcatcGCGTATTGGGATGCCACCCGGGCCTTCATGATCCTGTCCATCTTAGCTTGTTTCTTTGGCATCATCATCGGTGTCATGGCCTTCATCAATTACTcctcctttaacggatttgacaAAACCTTTGCTGCGGGAATTCTCTATTTCATTTCATGCTTCTTTGTGCTGCTGGCTATGGCTGTCTACACAGGGATGACGGTCAACTACTTTGGAAAACGATACGGGAACTGGCGGTTCTCGTGGTCGTACATAATGGGTTGGGTTTCTGTGGTGCTCACTTTCTTTTCAGGGATCTTCTATATGTGTGCTTACCGGATGTATGAACCGAGAGGGCCCATGTCACGCTGAAGCTTCTCATCTTAGATCTGCTATTTGATCCATTCAGTATGAATGTGAACCATCATGTCACCCCTTACCCCTTCATCTTATACCAatgatttattgttgttttaaaatcatataaaataaactaatactAACTAATA

Function

symbol description
lim2.3 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

NR:

description
lens fiber membrane intrinsic protein-like isoform X3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259707.1 True 806 mRNA 0.46 5 11711505 11713995

Neighbor

gene id symbol gene type direction distance location
zgc:77784 LOC107582568,LOC107662767,LOC107699896,LOC107748585,LOC107597576 coding upstream 6542 11655855 ~ 11704963 (+)
acad8 acad8,LOC107582571,LOC107713443 coding upstream 131866 11575570 ~ 11579639 (+)
vps26b vps26b,LOC107582573,LOC107699898,LOC107748589,LOC107597524,LOC107713444 coding upstream 138057 11567390 ~ 11573448 (+)
jam3a jam3a,LOC107699899,LOC107662760,LOC107597526,LOC107713445 coding upstream 145488 11558013 ~ 11566017 (+)
LOC122359584 NA coding upstream 332075 11377405 ~ 11379430 (+)
si:dkey-4p15.5 LOC107662772,LOC107729104,LOC107699895,LOC107597533,LOC107586295 coding downstream 4932 11718927 ~ 11725866 (+)
zpld1b si:ch211-229d2.5,LOC107662750,LOC107586294,LOC107726089,LOC107729095,LOC107597577,LOC107699883 coding downstream 52668 11766663 ~ 11772646 (+)
si:ch211-229d2.5 LOC107726094,LOC107662759,LOC107586313,LOC107699888,LOC107597602,LOC107729100 coding downstream 61875 11775870 ~ 11779693 (+)
alcamb LOC107726107,LOC107662775,LOC107586292,LOC107699891,LOC107597537,LOC107729116 coding downstream 75946 11789941 ~ 11806948 (+)
dyrk1ab dyrk1a,LOC107726100,LOC107662773,LOC107586271,LOC107597536,LOC107729114 coding downstream 94212 11808207 ~ 11820288 (+)
G105650 NA non-coding upstream 155207 11555878 ~ 11556298 (+)
LOC122358459 NA non-coding upstream 233966 11474428 ~ 11477539 (+)
G105628 NA non-coding upstream 372572 11338265 ~ 11338933 (+)
G105623 LOC107729090,LOC107662800,LOC107586245 non-coding upstream 380205 11330420 ~ 11331300 (+)
G105622 LOC107662753,LOC107729089,LOC107662756,LOC107717280,LOC107657263 non-coding upstream 381185 11329925 ~ 11330320 (+)
G105730 NA non-coding downstream 12552 11726547 ~ 11729150 (+)
G105736 NA non-coding downstream 39532 11753527 ~ 11755519 (+)
G105739 NA non-coding downstream 48400 11762395 ~ 11762689 (+)
G105819 exoc3l2b,LOC107662783,LOC107586290,LOC107729130,LOC107597542 non-coding downstream 187356 11901351 ~ 11903829 (+)
G105860 NA non-coding downstream 356304 12070299 ~ 12070863 (+)
LOC122358628 NA other upstream 338814 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 983110 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1320905 10353161 ~ 10390600 (+)
G105248 NA other upstream 1504053 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 1601062 10093455 ~ 10110443 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 313560 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 379962 12093957 ~ 12097646 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 1123587 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 2202578 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 2243202 13957197 ~ 13961807 (+)

Expression


Co-expression Network