alcamb (LOC107726107,LOC107662775,LOC107586292,LOC107699891,LOC107597537,LOC107729116)


Basic Information

Item Value
gene id alcamb
gene name LOC107726107,LOC107662775,LOC107586292,LOC107699891,LOC107597537,LOC107729116
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11789941 ~ 11806948 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259717.1
CAGGCTTCAACAGATGTAACACGTGGGGAACAACCTCAAAGTTTGAATTTACTGACGCATGCTGAGTGTGTTGCACTTTCCAGAACATTATCCGGCAAGGACGTGCTAACGCAAGGATATTATTTCTCGCGATTGAAGGAACCAGACTGCTGAAAGATGCACCGGATCGCCCTTTTAACGTGTATACTCACCGCATCACTGATGAATCAagCGAGCGGTTTGGAAACTATCACCGGCAAGTATGGAGACACCATTGAAATCCCATGCAACAACGGACGCATCGCGGAAGCAGATGCTACATTCGTTAAATGGAAATATGACAAAGATGGCAGCATACTGGTGAAACATCAGAATCAGAACGCCTCTGTTTCAAGCGACGTGAGCTACAAGAACAGAGTCAGTATTAAAAAAGATTTGAGCCTCGTCATCGCACAACTGGCCATGAGCGACCAGAGAACCTTCACCTGCATGGTGGTGgtaaaagaagacattttggaGTACCCTGTTCAACTGGCTATTTACAAGGTTCCATCGCAACCTCAAATCACAAACCTAACGACTGTGATGGCAATCGGCAAACCAACTACGTTAGCTCGGTGTCGTACTGAAGATGCCAATCCAGCTGCCAACATCACGTGGTTCAAGAACAAAACTCCTCTTATGACCGATGGAGCAGCCATTAAAATCACAACCAATGTGGATGTTAATAAAGAGACGGGACTGTCCACGACAACTTCCTCCCTGGAGTATACAGCAGTGAAGGGAGACATTGACGCCAAGTTCACCTGCCAGGTTCAACACGTCAAGTCTGCAAACATGGATTCTTCACCTCTCGTCTTCACTGTGAactACCCCACCGAGAAGGTCAGTCTCAAAGTGGCGTCCCAGGGTCCTTTTAAGGAAGGGGACAACGTGACCCTCAAATGCACAGCAGACGGAAACCCTCCGCCTTCTAGCTTCAACTTCTACATCAACgGACAGAAAAAGACTGTGAACTCCAACACGTACACCTTGAGCAACGTCACCCGGGAGAACAGTGGAGAATACAAATGCTCGCTCGTGGACAATGAGAACATTGTGGCTTCTGCACCCATCACAGTTGAATATCTTGATTTGGTCCTTAGCTCCACTGGTAAAATTGTTAAGAAACTTGGCGAGAGCCTTGAGATGACTGTAGATGTTAAAGCTTCAGGAGCGGCGCAAACTTCTTGGAAGAAGGGCAATGCCAAGCTGAACAGCCTGCCCAAGTTTGAAAAGCTGTCATACGCTGACTCTGGCGTGTATGAGTGTGTTGTTTCCATGGCCGGCTTCAAGAAAACGCAAACATTTGAGTTAGTAGTTGAAGGTTCTCCGGTCATTCAGAGCCTGCTCAAGGAGCGTGGTGAGGGCATGAACAAGGTCCTGAAATGTGCGGCTGAAGGCTTTCCAAAACCCACAGTACAATGGAGTGTCAATGGCACAAGTGTTGAGAGTGCTTATGAGAACGGAAGAGTCACATACAGCCTCAGTATTGTTCCGAAGGGCAATCTCACGGTGTCCTGCGCCGTCTCGAATGTCTTGGGTTCTGACGTTAAGAGCATGAATGTATCCGCACTTATTGAGGACGTGACAATGGACAAACAAGATCAGAAAGACGAGTACAGTGACCAGACGGTACTGGCTGTCGGTATAGTTGTTGGTCTGATGCTGGCCGCTCTCGCTATAGGACTGGCCTACTGGCTGTATACGAAGAAATTCAGGCAAGGATCCTGGAAAACTGGAGAAAAAGAAGATGGATCTGCAGAAGAGAGTAAGAAGCTGGAGGAGAATCAAAGCCAAAAAGCTGACGTGTAATGTCAAGTGAGCTGTTCAGGGATTCATTTAAATGCGATCCCTTTTTCCACGAGAAGGAGTGAAAAATCGGTGAAATCTGTgtgaaaggaggaaaaaaaaaaaaaaaaatcagaagcTGTAATGGAGGACCCGAGTAGCTGTGTCAGTTACATCTCCAGCATCGTCTGTAACGTGTCTGTGCCTCCCCTATGCTGGggatttaattaataatgtatgttGTAAAGTATGTGAATCTTTTTTGCATTGAAGATCAAGCCTGTTCAGAAACCTTTTGTCTGTAAAGTGTTTATTCATAATGTTggatttcatgttttatttttatgtcccAGCTATTTAGTTGATGCAAATTTGTGTTTGCAGTTTCACATGGTAGAAACACTGAGGCCTTTAGTGTCTGTATAGGACTTTTCCTTTTAGAATTACATGTAGTACCTAACCTGTGGCATGATGTGAAGCATGATATTCTGAGCACTTGGCGAGTTTTCAGGTCTTAACAAGTCAGTAAGCCAAATTACATCCCAATGTTATACTTGTTGGGGTGTAAAAGACCATTATTTACCAATATTTAGCATTATAAAAGACTGTGACCTACaatttgaagtttaaaaaaaaaaaaaaaaaaaaaaatcagagaaatgtaatttctgaaGTAAGACGTTAGTGCAGGGACCAGAGCTTGTTTAATGAAAACCATGCCTTTTGCTTGGAttgtttaccatttaaaattgGGGTTTTTATCACATGTGTTGCCTTTTTTTCAGGATAACCGAAAATCATCTCTTAATGTATACCGACACTGACTTATCACCCGTTTCTGTGTGTTCTTTGATGTTTCATTGTTTTGCTGCAGAATTGTATGTGTTCTGGTTTAAGCAGTACTTGTAAATATGGTTAacttctttttattgtttttatgttctatTTATATTGTTGAGGTTTAGCTAAATGCCAGTGTTTTGACATTATGTTAgctagttttagtcattttctcCTGAAAACATACCTCCGTTGCTGTTGAATGGTACAGTGCATTTGATGGTATTTACTTGCagattttaaattcaaactttCAGTTAAATGCATAGTGGTTGCTGCATTTCCACACTTCAGTGCATATTACCTGCATTTAATCCGCTGTCAAGACCAAAGAGGTTGAATGTGGCCGTGCAAGTATTGTACATACTCACCATTGTTTTGTACTATTAGTTCAaataaagtgtacatttttaggaaaga
>XM_043259718.1
CCAGGCTTCAACAGATGTAACACGTGGGGAACAACCTCAAAGTTTGAATTTACTGACGCATGCTGAGTGTGTTGCACTTTCCAGAACATTATCCGGCAAGGACGTGCTAACGCAAGGATATTATTTCTCGCGATTGAAGGAACCAGACTGCTGAAAGATGCACCGGATCGCCCTTTTAACGTGTATACTCACCGCATCACTGATGAATCAagCGAGCGGTTTGGAAACTATCACCGGCAAGTATGGAGACACCATTGAAATCCCATGCAACAACGGACGCATCGCGGAAGCAGATGCTACATTCGTTAAATGGAAATATGACAAAGATGGCAGCATACTGGTGAAACATCAGAATCAGAACGCCTCTGTTTCAAGCGACGTGAGCTACAAGAACAGAGTCAGTATTAAAAAAGATTTGAGCCTCGTCATCGCACAACTGGCCATGAGCGACCAGAGAACCTTCACCTGCATGGTGGTGgtaaaagaagacattttggaGTACCCTGTTCAACTGGCTATTTACAAGGTTCCATCGCAACCTCAAATCACAAACCTAACGACTGTGATGGCAATCGGCAAACCAACTACGTTAGCTCGGTGTCGTACTGAAGATGCCAATCCAGCTGCCAACATCACGTGGTTCAAGAACAAAACTCCTCTTATGACCGATGGAGCAGCCATTAAAATCACAACCAATGTGGATGTTAATAAAGAGACGGGACTGTCCACGACAACTTCCTCCCTGGAGTATACAGCAGTGAAGGGAGACATTGACGCCAAGTTCACCTGCCAGGTTCAACACGTCAAGTCTGCAAACATGGATTCTTCACCTCTCGTCTTCACTGTGAactACCCCACCGAGAAGGTCAGTCTCAAAGTGGCGTCCCAGGGTCCTTTTAAGGAAGGGGACAACGTGACCCTCAAATGCACAGCAGACGGAAACCCTCCGCCTTCTAGCTTCAACTTCTACATCAACgGACAGAAAAAGACTGTGAACTCCAACACGTACACCTTGAGCAACGTCACCCGGGAGAACAGTGGAGAATACAAATGCTCGCTCGTGGACAATGAGAACATTGTGGCTTCTGCACCCATCACAGTTGAATATCTTGATTTGGTCCTTAGCTCCACTGGTAAAATTGTTAAGAAACTTGGCGAGAGCCTTGAGATGACTGTAGATGTTAAAGCTTCAGGAGCGGCGCAAACTTCTTGGAAGAAGGGCAATGCCAAGCTGAACAGCCTGCCCAAGTTTGAAAAGCTGTCATACGCTGACTCTGGCGTGTATGAGTGTGTTGTTTCCATGGCCGGCTTCAAGAAAACGCAAACATTTGAGTTAGTAGTTGAAGGTTCTCCGGTCATTCAGAGCCTGCTCAAGGAGCGTGGTGAGGGCATGAACAAGGTCCTGAAATGTGCGGCTGAAGGCTTTCCAAAACCCACAGTACAATGGAGTGTCAATGGCACAAGTGTTGAGAGTGCTTATGAGAACGGAAGAGTCACATACAGCCTCAGTATTGTTCCGAAGGGCAATCTCACGGTGTCCTGCGCCGTCTCGAATGTCTTGGGTTCTGACGTTAAGAGCATGAATGTATCCGCACATCAGAAAGACGAGTACAGTGACCAGACGGTACTGGCTGTCGGTATAGTTGTTGGTCTGATGCTGGCCGCTCTCGCTATAGGACTGGCCTACTGGCTGTATACGAAGAAATTCAGGCAAGGATCCTGGAAAACTGGAGAAAAAGAAGATGGATCTGCAGAAGAGAGTAAGAAGCTGGAGGAGAATCAAAGCCAAAAAGCTGACGTGTAATGTCAAGTGAGCTGTTCAGGGATTCATTTAAATGCGATCCCTTTTTCCACGAGAAGGAGTGAAAAATCGGTGAAATCTGTgtgaaaggaggaaaaaaaaaaaaaaaaatcagaagcTGTAATGGAGGACCCGAGTAGCTGTGTCAGTTACATCTCCAGCATCGTCTGTAACGTGTCTGTGCCTCCCCTATGCTGGggatttaattaataatgtatgttGTAAAGTATGTGAATCTTTTTTGCATTGAAGATCAAGCCTGTTCAGAAACCTTTTGTCTGTAAAGTGTTTATTCATAATGTTggatttcatgttttatttttatgtcccAGCTATTTAGTTGATGCAAATTTGTGTTTGCAGTTTCACATGGTAGAAACACTGAGGCCTTTAGTGTCTGTATAGGACTTTTCCTTTTAGAATTACATGTAGTACCTAACCTGTGGCATGATGTGAAGCATGATATTCTGAGCACTTGGCGAGTTTTCAGGTCTTAACAAGTCAGTAAGCCAAATTACATCCCAATGTTATACTTGTTGGGGTGTAAAAGACCATTATTTACCAATATTTAGCATTATAAAAGACTGTGACCTACaatttgaagtttaaaaaaaaaaaaaaaaaaaaaaatcagagaaatgtaatttctgaaGTAAGACGTTAGTGCAGGGACCAGAGCTTGTTTAATGAAAACCATGCCTTTTGCTTGGAttgtttaccatttaaaattgGGGTTTTTATCACATGTGTTGCCTTTTTTTCAGGATAACCGAAAATCATCTCTTAATGTATACCGACACTGACTTATCACCCGTTTCTGTGTGTTCTTTGATGTTTCATTGTTTTGCTGCAGAATTGTATGTGTTCTGGTTTAAGCAGTACTTGTAAATATGGTTAacttctttttattgtttttatgttctatTTATATTGTTGAGGTTTAGCTAAATGCCAGTGTTTTGACATTATGTTAgctagttttagtcattttctcCTGAAAACATACCTCCGTTGCTGTTGAATGGTACAGTGCATTTGATGGTATTTACTTGCagattttaaattcaaactttCAGTTAAATGCATAGTGGTTGCTGCATTTCCACACTTCAGTGCATATTACCTGCATTTAATCCGCTGTCAAGACCAAAGAGGTTGAATGTGGCCGTGCAAGTATTGTACATACTCACCATTGTTTTGTACTATTAGTTCAaataaagtgtacatttttaggaaaga

Function

NR:

description
PREDICTED: CD166 antigen homolog A-like isoform X2

GO:

id name namespace
GO:0060385 axonogenesis involved in innervation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0021885 forebrain cell migration biological_process
GO:0030424 axon cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259717.1 True 3069 mRNA 0.42 16 11789942 11806948
XM_043259718.1 False 3040 mRNA 0.43 15 11789941 11806948

Neighbor

gene id symbol gene type direction distance location
si:ch211-229d2.5 LOC107726094,LOC107662759,LOC107586313,LOC107699888,LOC107597602,LOC107729100 coding upstream 10248 11775870 ~ 11779693 (+)
zpld1b si:ch211-229d2.5,LOC107662750,LOC107586294,LOC107726089,LOC107729095,LOC107597577,LOC107699883 coding upstream 17295 11766663 ~ 11772646 (+)
si:dkey-4p15.5 LOC107662772,LOC107729104,LOC107699895,LOC107597533,LOC107586295 coding upstream 64075 11718927 ~ 11725866 (+)
lim2.3 lim2.3,LOC107748598,LOC107699889,LOC107597599,LOC107662761,LOC108435296,LOC103047043,LOC108277938 coding upstream 75946 11711505 ~ 11713995 (+)
zgc:77784 LOC107582568,LOC107662767,LOC107699896,LOC107748585,LOC107597576 coding upstream 84978 11655855 ~ 11704963 (+)
dyrk1ab dyrk1a,LOC107726100,LOC107662773,LOC107586271,LOC107597536,LOC107729114 coding downstream 1259 11808207 ~ 11820288 (+)
trnap-cgg_29 NA coding downstream 13613 11820561 ~ 11820632 (+)
thap12b prkrirb,LOC107586270,LOC107662777,LOC107729129,LOC107699890,LOC107597535,LOC107726109 coding downstream 15135 11822083 ~ 11827093 (+)
map6b map6b,LOC107586269,LOC107726093,LOC107662778,LOC107729131 coding downstream 21743 11828691 ~ 11835875 (+)
zgc:112083 zgc:112083,LOC107726099,LOC107662779,LOC107729102 coding downstream 30136 11837084 ~ 11842624 (+)
G105739 NA non-coding upstream 27252 11762395 ~ 11762689 (+)
G105736 NA non-coding upstream 34422 11753527 ~ 11755519 (+)
G105730 NA non-coding upstream 60791 11726547 ~ 11729150 (+)
G105650 NA non-coding upstream 233643 11555878 ~ 11556298 (+)
LOC122358459 NA non-coding upstream 312402 11474428 ~ 11477539 (+)
G105819 exoc3l2b,LOC107662783,LOC107586290,LOC107729130,LOC107597542 non-coding downstream 94403 11901351 ~ 11903829 (+)
G105860 NA non-coding downstream 263351 12070299 ~ 12070863 (+)
G105870 NA non-coding downstream 284906 12091854 ~ 12093153 (+)
G105880 NA non-coding downstream 399460 12206408 ~ 12248991 (+)
G105890 NA non-coding downstream 444941 12251889 ~ 12252728 (+)
LOC122358628 NA other upstream 417250 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1061546 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1399341 10353161 ~ 10390600 (+)
G105248 NA other upstream 1582489 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 1679498 10093455 ~ 10110443 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 220607 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 287009 12093957 ~ 12097646 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 1030634 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 2109625 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 2150249 13957197 ~ 13961807 (+)

Expression


Co-expression Network