brca2 (brca2,LOC107752535)


Basic Information

Item Value
gene id brca2
gene name brca2,LOC107752535
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17623734 ~ 17635824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259744.1
TGTTAAACCAGCTTTATCCACGCGTAGAGTAAACAGGTCCTCTCAGAACATTTCAGGAAATAAGACGACTTGAATCGGAGATGAAGACGAAATTTCAGTGACCTTCGAAAACTTATACGTTACAAAAAGCTCTCATCCGTGCCAACACGTTCATTTACGGTCCAATTACGATATTGAACTTGGTTCACATTTAACAGCATCACACTCATGGCAGCatgttttacagtttctttCCTCAGATTGACGAAGAGCTTGGACCTCTTAACCCTGACTGGTTTGAGGAGTTGACTGCAAAAGCTTCTAGAGATGAAGTATGTCCTGACAGTTCAAAAGCTGAGGAGGATGAGACGCTCAAAGTACCAGAGACCTCAGCCTTGGCCAGTCAGATGTTTTCTACACCCAAAATATTCAAGCAGCGATGCTTTCAGTCGCCTGCTTCCGTTCCTCATGAAGAGTCGCCTTATGAAGTGACTAATGGAGACTCATCAGCTTTTCCCTGGACAGAATCAAGCCCATGTTTGTTTGGTTCAGCCAAAGACAGTCAAACGTTTGATGAAAAACCTAGGAATTGCTTTGAACATCAGGATACACCAAAAAGGTCTTTGGCACGTTCTGTAAAGCAGATATCGGAGAGCCTCGGGGCACAAATCAACCCTGACCTATCTTGGACCAGCTCCTTTAACACGCCATCCTCTTTGACTCCCACTGTGATACTGCCTAAGACTGAGGAACTTGCTCCATTAAGTGACATCAAAGACAAGGAAGCAATTTTTGTGCGGAAACTCTTCCCATCTCTTTCAAAAGGCTCTGCAAGCAATGATACATTGAGTGATACAACACTAAAACAAGTGATAGCCAAAAGCGAGGCTATTCAGGCTGATGACCTGGGAGAAAAGCCTGTTTGCTCTCCAAGTGCATCCCTTGACAAAAGTGGCTTGTGGAAGCAGAAGGTTCCCTTCGCTATAGAGGATGGGGATGTCCGCAGCACGGTGCAGAATGTTCTTGATGGTGCTGAGGATGTGTTGTCAATATTTTTCAGTAACAGCACTTCAACTCTGCGAAGAATCAAAACCAAAGAAAGGATCAGAAGGAGAATAACCGATTCTTCAAAGGATGTCAAATCAGCTGATCTAACTTCAGAGCCAGAAGAGATATTAATGGATGAGGCAGAAATAAAAAGCCCaagcaaaaataaagatatCATTAAGTGGACCCCACTAAGTTTATCAGAATCCATTCTTAATGGAGACTGTCCGGACTCGTCTTTGATAAATAATCACAACACTGTTGCCTCTAGTGAAACTAATAGTCATACTGTTTTCAACTGCATTGCAGAAAGTAGCCAAACTTTTTCACAGAGTGTGAAACTCAAGTCTTATCCAGAAGGATCTCCATGTCAGAAGTCTTTGTTAGACAAAACACCTGCTTTTATGCTTTCTAGAAAGCTCCGAAAATTTGTGTATCAAGTGCCAAGTTCAGATCTGTCGACACTCAATGACACTCAACCAAGATGTTTGGACCAAATGCTCAAAGaaaatcCCTCTTTGGTAGAGTCTAGTGACCTAAATGAATCTACAGTTTCCAGTGAAAATGCAGTCAAAAATCATACAGAGCCTCAAGACATCAAACAGTTGCCTACAGAAATCCATGATCTTGATCTTGGACTAGATATGACGCAGCTTTCCAAGGCATTTGCAGAGGATTTCACACAAGAAATAATGCCAGGAGCACTGCTTGACCAGACTGTACAGTGCGACCAAAATGGCAGAGTGCAACATAAAGCAGAAGTTGAGGAGAAGAACAAAGTTGGTAGTGACAATGACATCTCTGGTTTAGCAGACATTTCTGTGACCTCTCTAAACAAGTCAACAGTCATGCTTACAACTTTTGAAATTAGTCATGACAGTGGTTGCCCCTCCACCTTTTCAGATTTGGATGGTGCAACAGCCTTGTGTGCAGACATCAAAGagttttttccttcttttaaaACGGCAAACAACAAGGCCATTTCCATACCTGATGAGGCCATAATAAAGGCCAAAGTATCACTAGATGAAGCTGCGGGGAATTTTTTAATCGACACCTTAAATGGAACTACTCCAATACATTATCAGGCCACAGAGACATTGTGCAAACCCATTTCAGGAAGCGCTAATGTAAATAAATCGTCCACAGGACAGTCCATCTTCTCTCAACATGCAACaagagtgtgtgtcagtgttgcTCCCAAGAATGACAGTCCAAAGAGTTTGAAAATTAGTATTTCAAGCTGCTCTTCACCACAGTCAAATGAATCTGATTATAAAACCGGTTCAAAGAggaatattacagttttaaatgttgGCTTTCAAACAGAGAATCTTTTGAAAGAGAAATTGGTGAGAGGTTCAGACTCATCAAAGTGCATTCATCAAAATTTGGATTTCAAAAGAAGTGCTGAAAGACAGACTGTGTTTGACATTAGCAGCACACACAAACCCACTGCAGTGAACTCCAGCCGTGATGGTGATGAGGAGAAAGGCACTTTGACAGCGTCTCAAAAGGCTGATGTTACAGAATTGTGCAATCTTTTGGAGGAAGAAAATAGTCAACATGAATTTACCCAGTTCAAACCAACAAATCTTGGCTCAGACAGCCACACTGCAGAGAAAGAGTGGGATCCCGATATACTCAACGGAATTGACTTTGATGATAGTTTTAGCTGTGATGTTGTGAAACGAAAACATCCTGTCAAGACAGACACTTTTTCAGTAAATGGTTCTAATCACATTCAAATTGAGGATGCTGCCAAATTATCATGCACCATGTCAAAGAAAACCCAATATGCCATGGTTCCTTTGTCAGCGGCTGAAGACCGTTCTTTACTTAATATGAAGACTGTACCATCTTGTTTGATTGATAACACTTCAGtaaattgttttggttttaaaactgCTAAAGGGACAGCTATAAGCATCTCAGAAAAGAGTTTAAACAATGCAAGGTACTTTTTTGAAGAGGATGATCAAAAAGCCATATTTAATAGGGAAGTCAACATGGATTTTCAAGAAGTAAAGCCAGAGCATGCTAAAACAGAGCCTTCAGTCAATATTTCTGACAGTTtgaacacagaaaataaaacctaTGTTCAGATTAAACAAGATGGAAATTTCAGCTGTGGAGTTGTAAATGGAGCTCTTAAAGAGATACATAAGCAATTGGCAGGAAATGAAGGAACAGAGCAGAATTGTTTAGGTGAAAAAACAGATGTTGTTTGTGTTGACTTCAATAGTCATTTTGGATTTAGTACAGCCAGCGGTGAAAAGCTGAAAGTGTCTGAAAAAGCTCTTCTGCAAGCAAGAATACTTCTTAATGATGTTGACAGCTTAGAGGAAAATGCTTTTGGAAAACATGATACCTCTATGTCAACAACAAGCctcaaaacaaaagcagtttCTTGTACAAATGCCTGTATGAAAATATCTCAGCCACACTTACAAGAAACTGAAATATCTGATGGTGTGGATAATCCTTCCTTCGAAAGTGAGAAGGTCTTTCAAGAACAGAAATCTAGCAGTGATCCTAAAGAAGTTCTTGCAAAGGTTTTTATCTCAGAAACCTTGTCAAATCAGTCAGTGGAAGGCTATGGCTTTCAGACTGCCAGCGGGAAAGGAGTTTCCATTTCAGCCGGTGCCCTTAAGAAGGCAGAagccatatttaaaaattgtgatGAAAATATTATCTTGGAATCTGAGAAAAAGGAGGGAACAAATGACAAACTGGATGTTGAACTCAAAAAACTGGATGCTGAACTCAAACAAGTAAATTTATTTACTGAGAATTGTAAAAGTATGAGATTTTCAAATGTGTCTCTCATTGACACCAATGCTGTTCTCAGAGACACTGACCTGACTGATGACCTCTTGTTGCAGCCCTCTTCAGTCCAGCAAGAAGAAGGTCAGCTGAAAGGCCTTCAAAGTGAATTTAAGCATTCTTCTGAGTTATACAGCAACTGTGCTTTCAGTACTGCCAGTGGTAAAAAGGTGTCCATCTCAGCTGGGGCACTACAGAAAGCTAAGGATCTGTTGTTGGAGTCTGTAGAGAATTTGTCATCTGCAGATGGATCTCCAAATACAACACAGGTTGTTGATATCCAAATGGAAACTAGTTGTTTAAGAAAACACAAAGGATTCTCTACTGCAGGAGGAAAACTGTTGTCTATCTCTGCTTCTGGGTTACAAATGGCAAAGTATCTCTTCAGAGATTGTGAAGAGAGTTTATCCTCTGAAGATCTTCAGCACCAAGGTTTCAGTGATGTCTCAAAAAAGCCAATGACTAAAGTACAGGCAGCATTTGTGGGCTGTATTGATGTCTCCTCCATTCATGAGCACGAGATGGAAAGTTCTTCAGGAAAAAACATGGGATTCTCTACAGCTGGAGGGAAGAAGGTCACTTTCTCTGCTACTGCCCTACAAAGGGCGAAGAGCCTTTTTAAAGAGTGTGAAGAGGAGAGTTTTGTTTCTGGGAGTCTTCAGAATCAAGGCTGTAAAGGTTTTAGCAGTGCTAGTGGCAAGGACGTTACTGTCTCTGTAAATGAGGCACTGAATGAAGTTAGAGCGGCATTTGCAGGTTATGATGACATTTCCTTGCATCATGGACCTGAAAATTCTTCAAGAAACAGCATAGGATTCTCTACAGCAGGAGGGAAGAAGGTGGCAATCTCTATGAGTGCACTTCAGAGGgcagaaagtctttttaaagaTTGTGAAGAGGGAAATTTTTCATCTAAGGAAGTCCAACCTCAAACTAAGAATTCTGAAATCAGTGAGGACATAGTAGATGGAAACCTAAAGTTTGAAAcactaaacaagaaaaaatatagtTTCAGCACTGCAAGTGGTAAAGATGTGTCTGTATCAAAAGTTGCCCTTGAAGAAGCTTCTAAATTATTCAGAGACTGTGATGCCCAATTTACTGTTACTGATAGCCAGCTTCTACAGAGTGATTTCTCAGAATGCTGTCCTCAAAATAAGAAGAGACAAACCGGAACCATTCTGCATTCTTTGCCATCTAAAGCACCTCAGAATGAACCTGCACAGCTAGACTTGCACTCTTTGAATTTTAACAGTTGCACAGATACCCAGCAGAAGTACTTTGAGCAGGAAGCAATGGCTTGCACTAAAGCTTTGCTGGCAGATGATgacctgaatgaatcagcaagTTTGGCCATGACAGAGGACAAAAAAAGTCCATCTGTTCATGATCTACAGGCACAGGGATCTTTTACTCAGAACAGAAGGAAGCGTCCATTTGATGCCAGAAATGTAGCAGATTCAGGTCAGCCACCTTTGAAAAGACAACTTCTCTTAGAGTTTGACCGATCATTAGATGCAAAGACCTCATGCCTCATACCACTGAAAACCTGTCCAAATGGAACTCTAAGAGACAGGCGTGTCTTCACTTATAATGTCCACCTCAAGCCGAATGTCACTCGTCCAGATCGGCATTTTATGGACCAAAAGTCAAATGACCTCGAGCAACCATGTTCAACTATATCTGTCCAAGACACACACAACCCCGACTCTAAAGGAGTGTTTGTGCCCCCTTTTCAAAGGGTTTTGAAGAGTGGGACATCAAACTGTCAAGATGTCTCTAAAGTGTCCACTGGTTTTATACCACCTTTTAGGaaggaaaacaaagaaacagctgAGCACAGAAATCAAATAGACCAAAATATGACAACTTCTACATCACATAGTGATAGTGTTGCACAGCACTGTGACGGGAAGAGTCTACATGAGGgttctaaccctaaaccaaccACTTCAGTGGAAAGCGTACCTTTGAAAATCATGGATGCTAAAGGGAAAGACACCCAGCCATACAGAGAGACCTTAAACCTAGCCAGGGATATGCAAGACATGAGActcagaaagaagaaaaaactggCTATTCATCCTCTACCTGGCAGCCTTTACCTTGCTAAGACTTCTGGTGTCCCCAGGACAGGTCTGAGAGATGTTGTGGGAACCAAATGTCCTGGCCAATACACACAGGAGgagCTGTATCAGCACGGTGTACATCACAATGTCTTACAAATAACAAGTGAAAATGCTGAATCATTCAGATTTCACTGTAGTGACTTCTTCAAACATGAGCTCCTCATGGAGTCTGGTGGTCTTCAGCTGGCAGATGGAGGCTGGTTGGTTCCAGACAATAAGGGTACTGTGGGGAAATATGAATTTTATAGagCATTGTGCGACACCCCTGGTGTTGATCCCAAATTGATCAGTGAGGCCTGGGTATTCAACCATTACCGATGGATTGTATGGAAGCGGGCCTCCATGGAAAGAACTTTTCCAGATTTGATGGGTGGCCTTTGTTTGACTCCAGAGCAAGTACTTCTGCAGCTAAAATTCAGATATGATGTGGAGGTAGACCACAGTCAGAGATCTGCAGTCAGGAGGATCATGGAGAGGGATGATACTCCAGCTAAAACATTAGTGCTCTGTGTATGTGGTGTTGCTCAAACTTGTCAAAATCCAGAAAAGCCAGAGAAAGATGACAAAAGTCCTAATGCAAAGATGGAATCCTGTACGGTCTGGCTCACAGATGGCTGGTACTCCATCAAAGGCCTGTTAGACCCTCCACTCTCTGCCATGCTAAACAAGGGTCGTCTCCGAATCGGTGATAAGATTGTGAGCAGTGGAGCAGAGTTGGTTGGTTCCCAAGAAGCCTGTCCTCCACTGGAAGCTCCTGAATCTCTGATGCTCAAGatttCGGCTAACAGCACAAGGCGAGCTCGGTGGGACACTAAGTTAGGGTACTATCGTGACCCTCGGCCTATCAGCCTCTCACTATCGTCACTGTTCACTACTGGAGGTGTTGTGAGCTGTGTGAACATTGTAGTGTTGAGAAGTTACCCCACTCAGTGGATGGAGAAGAGGCCCAACGGTGTCTTTATATTTCGCAATGATCGTGCAGAAGATCGAGAGGCCACAAAACACAGTAACTTCAAGCACAAATCCATGGATCTTCTTATTTCCAAAATGCAGACCAAATTCGAAAAAGAAATGGAAGgtaaaaaaaaaagtcgagGCCAAAGGAGGACATTTAGTCAACATGAGATTGAAGCTCTGCAGGATGGGGAGGACTTGTATGAGGCAATGGAGAGGGATCCTGCTGTTGAGGCCTATCTAAGTGCGAGACAGATGGATGCAGTGCATAAGTACAGATGCTGTTTGGAGGAAAACAGGCAGGCAGAGCTTCAGGAGCGTATGCAGAAGGCTGTAATGGAAGCCCAGGCAACTGATGGTGGGTGTCCTAATCGAGATGTCACTCCTGTTTGGAAGCTCAGCATTTCTGACGCCAATGACCTGCAGAGCAACTGCGTTTACACCCTGAATATCTGGCGCCCATCGCAAGACCTGTACGGCTTGCTAAGAGAGGGCAACAGATACAGGGCTTATCACCTCGCCACATCAGAGGGGAAGAAACGCTCAGGCATTGCTCACATTCAGTTCACTGCCACCAAGAAAACATTCTTCCAGGAAGTTGAGGTGTCTCCAGAATGGTCGCATCTGCATTTCCGTGCTCGAGAATGTGTACGCTTCAGAGAACTTCAAAACCCTCAATTCTTCTCACCTTGTGGGGAGGTGGACATTGTGGGATGTATCGTCTCCATAGAGGGAAAACAAGGCCATCCCCCATTACTGCATCTTGTGGATGAGAACTTTGACCAGATCTCTGTGAGAACCTACAATAGTCTGGAACAGTTAGCTATAGAAGAGCTGGTAAAGCTGAGAGCGCTGGTTGCTCTTAGTAATGTTCAGATGAGACCGCTCTCTGGACCTGTACCAAGCCTTTATGCAGGAGAACAAGCTGTGTTCTCTGTAAACCCCAAAGAATCCCATCTGCAAGAAGCTATGACCTGTCTAAAGAACTTTGTCCAGACTTGTGAGAGTTTTTTCAGCATTGCAGAGGAGAAGGTCTCAGATGTGGTTCCTTCAGGTGTCTTGGGTTCTTTTCAGTCTCCAAGAACTCCTGCTGTGCAGTctaatacaaaaatgaatggcAGAGTAACCCCAAAGCAGAAAAGCAGCGTTTTCTCGCCTTTCACTCCACTAAATAGGAGAACTCCTGCGCCTGCATGTACCAGCGAGGGAAAAGATCCCAAAAGTTTGAAGAGAAGACGTGGTTTGGATTACCTGTCACGTATCCCGTCCCCTCCACCCCTTGCTCCTCTGAAAACTACAGCTTCTCCTTGCATTAACAGGACCTTCAATCCCCCACGAAGATCTGTGACTCCCAAACCTCCACAGAACGAGTCACCTCGAACCTCGCTTCCCCCGCTGGGAGAGGAGAAGTGGGTGCATGATGAAGAACTGGTGATGATAGACACCCAGGCGTTACTGGAAGGCTGATGGGTGACTGGACTCGTCTGGTGAAACACTAAATGTGAGTTGAAACACAAGAATGAAATCCAGAACTATGAAAGCAATTTCCACTTTTGGCAAGAAATTCAAAAGGCACTGCTGTCTTTGCTTTCTAGTTGCCTGGTTTACTTCGGTTCTTCGGTTAACATGAGAGATGCACTTTTTTATAGCTACtgcaatcatttttaaacttttcttgATTTGTTCTACTGTAAGTACGAAAGTTAGCAATGTTCAGCAGGAAAAAgaagtgtaaaaatgtatatgtaaaatgtttatatattaaaatttttattaaaagatggAAAGCAG

Function

symbol description
brca2 Predicted to enable DNA binding activity. Acts upstream of or within several processes, including female gonad development; kidney development; and spermatogenesis. Predicted to be active in nucleus. Is expressed in gonad; heart; intermediate cell mass of mesoderm; intermediate mesoderm; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including Fanconi anemia (multiple); brain cancer (multiple); hereditary breast ovarian cancer syndrome; melanoma (multiple); and reproductive organ cancer (multiple). Orthologous to human BRCA2 (BRCA2 DNA repair associated).

NR:

description
PREDICTED: breast cancer type 2 susceptibility protein isoform X1

GO:

id name namespace
GO:0007530 sex determination biological_process
GO:0007283 spermatogenesis biological_process
GO:0008585 female gonad development biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
K08775 BRCA2, FANCD1; breast cancer 2 susceptibility protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259744.1 True 8726 mRNA 0.43 27 17623734 17635824

Neighbor

gene id symbol gene type direction distance location
frya fry,frya,LOC107559014 coding upstream 680 17572425 ~ 17623054 (+)
rxfp2b rxfp2,rxfp2b,LOC107558987,LOC107683406 coding upstream 57663 17549776 ~ 17566071 (+)
b3glcta b3glct,b3glcta,LOC107756277,LOC107682850 coding upstream 74092 17489450 ~ 17549642 (+)
wdr95 wdr95,LOC107746697,LOC107704726,LOC107587932 coding upstream 145533 17463303 ~ 17478201 (+)
LOC122358547 tex26 coding upstream 160611 17460427 ~ 17463123 (+)
dchs1a dchs1a,LOC107587256,LOC107558986,LOC107683408,LOC108433795,LOC108278281,LOC107704701 coding downstream 25097 17660921 ~ 17750367 (+)
arfip2a arfip2a,LOC107587234,LOC107704786,LOC107559011,LOC107752500,LOC107682914 coding downstream 133380 17769204 ~ 17777553 (+)
fhdc4 LOC107752494,LOC107704784,LOC107682937,LOC107559008,LOC107587915 coding downstream 142773 17778597 ~ 17787869 (+)
LOC122358680 frem2b,LOC107752721,LOC107683412,LOC107730863,LOC107704782,LOC107582282,LOC108433801 coding downstream 401289 18037113 ~ 18039299 (+)
trpc4b trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445,LOC108433784 coding downstream 585448 18221272 ~ 18237305 (+)
G107477 NA non-coding upstream 56858 17566193 ~ 17566876 (+)
G107468 NA non-coding upstream 143686 17479848 ~ 17480048 (+)
G107450 LOC108433790 non-coding upstream 166048 17454294 ~ 17457686 (+)
G107447 NA non-coding upstream 309073 17309345 ~ 17314661 (+)
G107443 NA non-coding upstream 422797 17200408 ~ 17200937 (+)
G107547 NA non-coding downstream 180308 17816132 ~ 17816825 (+)
LOC122358482 NA non-coding downstream 222083 17857907 ~ 17859804 (+)
LOC122358481 LOC107575069,LOC107748074,LOC107682967 non-coding downstream 418444 18054268 ~ 18072232 (+)
LOC122358786 NA non-coding downstream 806871 18442695 ~ 18443413 (+)
G107688 NA non-coding downstream 889781 18525605 ~ 18526233 (+)
lyrm9 lyrm9,LOC107756492 other upstream 1109513 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1387393 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1580469 16004869 ~ 16043265 (+)
G107107 NA other upstream 1740224 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1911295 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 154021 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 196248 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 409193 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1120519 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1123758 18759582 ~ 18760497 (+)

Expression


Co-expression Network