gdpd1 (gdpd1,LOC107672421,LOC107554273,LOC107659934)


Basic Information

Item Value
gene id gdpd1
gene name gdpd1,LOC107672421,LOC107554273,LOC107659934
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10086677 ~ 10092950 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259757.1
GTaacagaaaacgtttttttgtttaaagcggAATGGATCTGACACGAATGTCTTTATTTGTCCATGAGCATCCTCTCGCGTTCACGCGCGTCACCAGACGCTTGCAGTGCGCATGCGCGTTCTGCGACTGTAGTATTATGACTGACCCGAGCAATATGTAAACTGCGCAGGGGGGTGGCCTGTCAAGAAACATTGGACTGCAAGCCCATGGGTGGGTTAACTGAGACATGCATGACGGTGCAAATAAAGAAGGATCCGATCTGACTGACACTACAGCTTCTCTCGTCTTTCTTGTGATCGCTGTTAAAGCCCGGCAGCGGCGGCTGGCCAGCGGTGCTGGATGATACCGGCCGGTGCGTTGACTTCTGCAGACACTGTCGCGTTTCAATGAATTGTAGTTACATAAGTGTGTTTACAGGACTGCCCGACCgataaaagtgaaaatgagcGCCGCGGTTTATGTTTTATCCACGGTTACCGGATATGTGCTCACCTCGACGTTACTGCTCAAGTGTCCGTCTCTGCTGCATCGGCGAAAGAAAGAAGCCTTCCGGAGCAAACACATCTCACACCGCGGCGGAGCTGGTGAGAACTTGGAGAACACAATGGCAGCCTTCAAGCACGCTGTTCAGCTGGGCACTGACATGTTGGAGCTGGACTGTCATTTGACCAAGGATGAGCAGGTGGTGGTATTGCACGATTCCAACCTGAAGCGCTCGACTGGaattaatgcatacatttcGGATGTGGCTTATTCTGATCTTCCACCTTACCTTTGTAAGCTTGGGGTGTCTTTCAAACGCGAATGCTACTGTGAAGGAGGAGATGACAAACGCATTCCTCTGCTGAGAGACGTGTTTGAAGCTTTCCCAAACACCCCTGTAAACATCGACATCAAGGTCAACAACGACACTCTCATCAAGAAGGTGTCTGAGCTGGTTGTCAGATACAACAGGGAGCATCTGACTGTCTGGGGAAACTCCAGCAATGAAATCGTTAAGAAATGTTACAAAGAGAACCCACAAATCCCAATCTTATTCAGTTTGCCCAGAGTGCTGCTGTTGCTCGGCCTTTTCTACACAGGCCTCCTACCCTTTGTCCCGCTCAAGGAACAATTCCTGGAGATTCCCATGCCTTCAATCATTTCCAAACTCAAAGATCCTGAGCGGCAGACACGGAGTCAGCGTTTCATAACATGGCTGGCAGACACGCTCCTCATGAGAAAAGCATTATTCGATCATCTGACGAGCAGAGGAATACAGGTGTATGTCTGGGTGCTGAATGACGAAGAGGACTTCAAACGTGCCTTCGACCTTGGGGCTACGGGGATCATGACAGACTATCCCACCAAGCTAAAGGACTTCATGGAGAAAAACTACCACTACACTACCGCTTTTAAATAAGACTTGTCGGCCAACTATCAatacgcttttccactgaccttTAGCCTCTAAACGGGCCTTTTAATTAGCCAACATTCTTTGATGTTTATGTCTATGAGTGTAGAAGTGGCAGCTATCAGCTCTGCATTCATCTCCGATCAGCCATTTTATGCCAGACAGGTTGTCATGAAATGTTCATAGCAATACACGTTATCCATAAAAAGCAGGAAGATTCATAAGAGGCTGTTATGATGAGCTTATCAGTCATGTTGGGATGGTGTCGTGATCATCACGACATATCTCTGAAGTTTTCAGGCACTTTCATTGTATTGTTATTACAACGTGAGGACGGACAGGCACTTGCTTGGGCATCACTTTCTGCAATAATACTGAACTCACTGAACAGTTAATTGTCTAAACGACGAGATCAAAGCTACTGATGTTTTTCCACggcttaaaaacagaaatgctaGCTTCAGGGGTGTACTGTAGGATTGTTGAGAGACCAATAATCAGGAGGCGTtagatattttcatgtttactcTGTGGTTtgattaaatgtgtatattttgtttttgtgaatttgtttcttttgccAAAAAGAGACTTTCAATTTCGAGGCTGAAAAGATGCCTCATTTTTGCTTGAAGAGTTGTGTTGTTTAGTATATGACCAGTCAGAAGTTTTGACACACCAACTCAATCTTCATTGTTACAATATCTACATTACAGTGTTATAACGTTAAAGATCGTATGGTAATGACGTCCcattgaacatttttatacGAGTGAAAATTCATATTCGAGCTGCTTCAAAACGTATTACGGCTTACATTTAACATCTACTCCAACTCATACTActactgctaataataatgcaataaaaaataggTATAATTAGTAGACAACCTCATGGAAACTTAATATTGGtctttgaaatcattttcatgTATTCCAGCAGTAGCCTTTAGGTCAAAAGTTTTTGTgatcattaaaaacaatgtcAGTCAAGCGTGTCCAAGCTTTTGACTGGTTGTGTATATTATAAACTGATAGAAGAAGACGTTGTGTTGGAGTGTAGGTCACAAACATGTGTAGCGTATAGCGTTTATGTGACGTTTGAATGTACTTTTGCTAGGACAGAAAaaggtttcattaaaatgctgGTGGTTTTGCTGTATTGAAAGGTAACgctaacaaaaacattttctcactCTTCTAAGGAAAAACAGAACGCATTTGCAACTGCCGTGACAGTAAGTCACTCCTGAAAAGAACAAATCTTTTAGATAATCAACCATCTGTGGAGTTCAAACGTTTCCCTCTTTTGTGAATTGTATACAGATACCCTTAGCTTTGTGCTGTGTTTAATTTTCTGGTTCATCTTTTCTCCGAGCCATTTCCGTTGGTTGTGTATGAATTCGGTGCACTGTTTTAATTGTGATTGATAGTACTGTAATTCAAAGATTAGTTATTATAGAGAATCTTTGTGAATATGCTgccattaaatatattttgtaaatgaatttaaa
>XM_043259758.1
TTTTGTaacagaaaacgtttttttgtttaaagcggAATGGATCTGACACGAATGTCTTTATTTGTCCATGAGCATCCTCTCGCGTTCACGCGCGTCACCAGACGCTTGCAGTGCGCATGCGCGTTCTGCGACTGTAGTATTATGACTGACCCGAGCAATATGTAAACTGCGCAGGGGGGTGGCCTGTCAAGAAACATTGGACTGCAAGCCCATGGGTGGGTTAACTGAGACATGCATGACGGTGCAAATAAAGAAGGATCCGATCTGACTGACACTACAGCTTCTCTCGTCTTTCTTGTGATCGCTGTTAAAGCCCGGCAGCGGCGGCTGGCCAGCGGTGCTGGATGATACCGGCCGGACTGCCCGACCgataaaagtgaaaatgagcGCCGCGGTTTATGTTTTATCCACGGTTACCGGATATGTGCTCACCTCGACGTTACTGCTCAAGTGTCCGTCTCTGCTGCATCGGCGAAAGAAAGAAGCCTTCCGGAGCAAACACATCTCACACCGCGGCGGAGCTGGTGAGAACTTGGAGAACACAATGGCAGCCTTCAAGCACGCTGTTCAGCTGGGCACTGACATGTTGGAGCTGGACTGTCATTTGACCAAGGATGAGCAGGTGGTGGTATTGCACGATTCCAACCTGAAGCGCTCGACTGGaattaatgcatacatttcGGATGTGGCTTATTCTGATCTTCCACCTTACCTTTGTAAGCTTGGGGTGTCTTTCAAACGCGAATGCTACTGTGAAGGAGGAGATGACAAACGCATTCCTCTGCTGAGAGACGTGTTTGAAGCTTTCCCAAACACCCCTGTAAACATCGACATCAAGGTCAACAACGACACTCTCATCAAGAAGGTGTCTGAGCTGGTTGTCAGATACAACAGGGAGCATCTGACTGTCTGGGGAAACTCCAGCAATGAAATCGTTAAGAAATGTTACAAAGAGAACCCACAAATCCCAATCTTATTCAGTTTGCCCAGAGTGCTGCTGTTGCTCGGCCTTTTCTACACAGGCCTCCTACCCTTTGTCCCGCTCAAGGAACAATTCCTGGAGATTCCCATGCCTTCAATCATTTCCAAACTCAAAGATCCTGAGCGGCAGACACGGAGTCAGCGTTTCATAACATGGCTGGCAGACACGCTCCTCATGAGAAAAGCATTATTCGATCATCTGACGAGCAGAGGAATACAGGTGTATGTCTGGGTGCTGAATGACGAAGAGGACTTCAAACGTGCCTTCGACCTTGGGGCTACGGGGATCATGACAGACTATCCCACCAAGCTAAAGGACTTCATGGAGAAAAACTACCACTACACTACCGCTTTTAAATAAGACTTGTCGGCCAACTATCAatacgcttttccactgaccttTAGCCTCTAAACGGGCCTTTTAATTAGCCAACATTCTTTGATGTTTATGTCTATGAGTGTAGAAGTGGCAGCTATCAGCTCTGCATTCATCTCCGATCAGCCATTTTATGCCAGACAGGTTGTCATGAAATGTTCATAGCAATACACGTTATCCATAAAAAGCAGGAAGATTCATAAGAGGCTGTTATGATGAGCTTATCAGTCATGTTGGGATGGTGTCGTGATCATCACGACATATCTCTGAAGTTTTCAGGCACTTTCATTGTATTGTTATTACAACGTGAGGACGGACAGGCACTTGCTTGGGCATCACTTTCTGCAATAATACTGAACTCACTGAACAGTTAATTGTCTAAACGACGAGATCAAAGCTACTGATGTTTTTCCACggcttaaaaacagaaatgctaGCTTCAGGGGTGTACTGTAGGATTGTTGAGAGACCAATAATCAGGAGGCGTtagatattttcatgtttactcTGTGGTTtgattaaatgtgtatattttgtttttgtgaatttgtttcttttgccAAAAAGAGACTTTCAATTTCGAGGCTGAAAAGATGCCTCATTTTTGCTTGAAGAGTTGTGTTGTTTAGTATATGACCAGTCAGAAGTTTTGACACACCAACTCAATCTTCATTGTTACAATATCTACATTACAGTGTTATAACGTTAAAGATCGTATGGTAATGACGTCCcattgaacatttttatacGAGTGAAAATTCATATTCGAGCTGCTTCAAAACGTATTACGGCTTACATTTAACATCTACTCCAACTCATACTActactgctaataataatgcaataaaaaataggTATAATTAGTAGACAACCTCATGGAAACTTAATATTGGtctttgaaatcattttcatgTATTCCAGCAGTAGCCTTTAGGTCAAAAGTTTTTGTgatcattaaaaacaatgtcAGTCAAGCGTGTCCAAGCTTTTGACTGGTTGTGTATATTATAAACTGATAGAAGAAGACGTTGTGTTGGAGTGTAGGTCACAAACATGTGTAGCGTATAGCGTTTATGTGACGTTTGAATGTACTTTTGCTAGGACAGAAAaaggtttcattaaaatgctgGTGGTTTTGCTGTATTGAAAGGTAACgctaacaaaaacattttctcactCTTCTAAGGAAAAACAGAACGCATTTGCAACTGCCGTGACAGTAAGTCACTCCTGAAAAGAACAAATCTTTTAGATAATCAACCATCTGTGGAGTTCAAACGTTTCCCTCTTTTGTGAATTGTATACAGATACCCTTAGCTTTGTGCTGTGTTTAATTTTCTGGTTCATCTTTTCTCCGAGCCATTTCCGTTGGTTGTGTATGAATTCGGTGCACTGTTTTAATTGTGATTGATAGTACTGTAATTCAAAGATTAGTTATTATAGAGAATCTTTGTGAATATGCTgccattaaatatattttgtaaatgaatttaaa

Function

symbol description
gdpd1 Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to be involved in N-acylethanolamine metabolic process and glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1).

NR:

description
glycerophosphodiester phosphodiesterase domain-containing protein 1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259757.1 True 2913 mRNA 0.42 10 10086681 10092950
XM_043259758.1 False 2852 mRNA 0.42 11 10086677 10092950

Neighbor

gene id symbol gene type direction distance location
galnt17 wbscr17,LOC107714690,LOC107582595,LOC107727938,LOC107554251,LOC108411682 coding upstream 121001 9949393 ~ 9965676 (+)
flot2b flot2b,LOC107661103,LOC107727921,LOC106581211,LOC105011286 coding upstream 151221 9927268 ~ 9935456 (+)
p2rx8 LOC107672369 coding upstream 169565 9911656 ~ 9917112 (+)
mrm3a LOC107716545,LOC107582598,LOC107672374 coding upstream 239292 9844405 ~ 9847385 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 390133 9679771 ~ 9696544 (+)
clptm1 clptm1,LOC107727917,LOC107715057 coding downstream 86316 10179266 ~ 10187171 (+)
relb LOC107715143,LOC107582588,LOC107701429,LOC107659928,LOC107727919,LOC107554269 coding downstream 97637 10190587 ~ 10199278 (+)
LOC122358538 NA coding downstream 145227 10238177 ~ 10241248 (+)
dhx40 dhx40,LOC107659925 coding downstream 194005 10286955 ~ 10299275 (+)
cltcb cltcb,cltc,LOC107554261,LOC107659923,LOC108443353 coding downstream 207390 10300340 ~ 10325420 (+)
G105171 NA non-coding upstream 178759 9846835 ~ 9907918 (+)
G105168 NA non-coding upstream 242625 9843836 ~ 9844052 (+)
G105145 LOC107714397,LOC107672358 non-coding upstream 271287 9813991 ~ 9815390 (+)
G105109 LOC107727913,LOC108415199,LOC107672419,LOC107582599,LOC107714247,LOC107661107,LOC108277446 non-coding upstream 283560 9763871 ~ 9803117 (+)
G105225 NA non-coding downstream 36601 10129551 ~ 10131865 (+)
G105199 LOC107582590,LOC107715485,LOC107701431 non-coding downstream 57012 10149962 ~ 10169712 (+)
LOC122358545 NA non-coding downstream 78912 10171862 ~ 10177828 (+)
G105240 NA non-coding downstream 80357 10173307 ~ 10175622 (+)
G105242 NA non-coding downstream 84922 10177872 ~ 10178226 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 370988 9703426 ~ 9715689 (+)
G105011 NA other upstream 413332 9669634 ~ 9673345 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other upstream 462705 9588789 ~ 9623972 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other upstream 534549 9549752 ~ 9552128 (+)
camkk1b camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 562703 9515955 ~ 9523974 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other downstream 505 10093455 ~ 10110443 (+)
G105248 NA other downstream 111889 10204839 ~ 10207452 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 260211 10353161 ~ 10390600 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 629022 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 1277298 11370248 ~ 11372691 (+)

Expression


Co-expression Network