si:dkey-182i3.9 (LOC107683825,LOC107743700,LOC107585549,LOC107718302,LOC107601733)


Basic Information

Item Value
gene id si:dkey-182i3.9
gene name LOC107683825,LOC107743700,LOC107585549,LOC107718302,LOC107601733
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13379653 ~ 13382951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259782.1
TAcgctacttttattttaaagacgtGGTTTTGTAGAAACGGAAGTTAACGCAGTAAACGCGGTATTGTTTGTGTTCTTACTTCATTCGCTCACTTTATAAATCAGATATTACAGTTACTGAATGAGCACAATGGAGGAGCATGAATTATTTCACAAACAGACTATGTCTATAATGATGCTTCTGATAGAAACAGTCCTAGACGAGATTCAGAAAGTTTTTGAATGTGAATGTCGCCCATCTCACACTGAAATTAGTGACAGAGATCCGATATTGGACATGCATGAGAAACAACGCAGACTGGCAAAGCTCACAGCTGTGATGGAGACCTTTACCAAGGTGGCTGTtcaaaaaatatgcaaagtCTTCAGTTATTGCTTTGCACTTAAGCCATCCCAGTTGAAGGGTTTTAAAAGTTACAACGATGATGtaataagttttaaaaaaatggtgaaGGAGCATGTGAAGAGACCAGAACGAAAAAACTGTCAAGTTGTCCGAGATGTGCCTGATTCTGCAGCTGTAGCTCCGTCAGTGTCTCTGGAGAGCCAGAGACTGCTCACTGCGTCGCCTCAAGAAAAAACTGTTCAACCACAAGATTCAGTTAAAGGCCAGGAGGAGGTTCAAGTTTCAGAATTTTCTCCCGAGCTGTCATTTTTTGTAGTTGAATACAGTACCATCGCTTCTGATGAAGACCAGCAAGGTGAAGTCGACGCACAAGCGGAGCAAATAAGTACAAAACCTGACAAAACCGGGAAGCCAAAACCGTATGACTGCAAAGAGTGCggaaagaaatatttctttagaCGCTCACTAGATCGGCACAAATGTGGACATTTAAAAGGGCCTCACTGTTGCGAGCAGTGCGGGAAGAAGTTCAAATACTTAAAAGGATTGAGGAAACACCTACTGAATCACACAGAGAAGAAAGGGATCTGCAAGACATGTGGGAAAGCCTTCGCGAATCTTAAGATGCACGAACGCGTCCACCTGGATGTGAAGCCCTTTCTGTGTTCCACGTGTGGACACAGCTTCACGGTGAAAGGAAGTTTGCTGGCACACCAGAGGATCCACACGGGTGAGAAACCGTACAGCTGCGAGGTCTGCGGGAAGCACTTCACGCACTCGAGCAACCTCGCCTGCCACCTGCTCACCCATTCCAACGACAGGCCGTGGAAATGCAGCCTCTGTGACAAGACCTTCAAAACCGAGAAGAAAATGAGCGCGCACCAGCTCGTGCACACAGGAGAGAAACCCCATGCGTGTAGCAAATGTGGGCAGAAGTTCGGCCACGTCACTAATCTCAGGAGGCATCTCCTGGTGCACAGCGGGGTGAAGCGGCACGCCTGTGAAATCTGTTCCAAGCAGTTTTATCAGAGCAAGTCTCTGAAGAGGCACATGGGAATCCACGGGGCTCTGAAGTCGTTTATGTGCGAAATATGCGGGAAGAGCTTTGTTTTTAACTATGCCCTACAGaaacacttactcacacacagcCATAAAGCAGATCTCAATGGCAAATCTAGAGATGGCAAGTCTTTCCCGTGCAACGAATGCGGAAAGCGCTACAGTTCGACCGCAATGCTCAAAATGCACCAGAGACTCCACACGGAGAAGGATCCGTACACGTGCAAAGTCTGTGGCAAGAGCTACAGCAGCTTGTATTCTCTGAAGGAACACCAGAAGCTTCATTCGGGGGCGACGCCGTTCAAGTGCGACATCTGCGACAAGACGTTCACCCAGAGAGTCGGTTTGAAAATGCACGAGGTGGTCCACACCAAAGACAGGCCGTACAGGTGTCCTGTTTGCGGGAGCCAGTTCGGCCTCCCCCACGGCCTGAGACTGCACATGCGCATTCACTCCGGCGAAAAGCCGCACAAGTGCGAGACGTGCGGGCTGTGCTTTCGCTTGTCCGGAAACCTGAGGAGGCACGAGCGCATCCACACCGGCGAGAGGCCGTTCAGCTGCGAGGTGTGTGGGAAGAAGTTCGTGCAGCTCAGCCACGTGAAGGCGCACATGCAGATCCACACCGGCGTCAAGCCCTATACGTGCCAGAAGTGCGGGAAGAAGTACGCGTACCGCAGAAACTACAACGACCACAAATGCATACCTGTGCGTGAAAACGACGTCGCCTTAAAGCGTGCTGGGGACTGAAGTGCAGTGCAGTGCACTTTCAGACAGATGTCATGAAGGTTAAAGACAGTGTTTACGTTTGGTTTGGAAAGCTGGATAAGCggtaataaaattaataattgagcCTGTCAAATTATTTAGATTCAAAATCAATAGTACAGTGGGAATCTTTCTGTACATTGCACTCTGTTCAAGAATAAACAGTTTGCCGAGaa

Function

NR:

description
PREDICTED: zinc finger protein 883-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259782.1 True 2346 mRNA 0.48 5 13379653 13382951

Neighbor

gene id symbol gene type direction distance location
phykpl phykpl,LOC107743705,LOC107683819,LOC107585546,LOC107690454,LOC107601730,LOC107718273,LOC108439974 coding upstream 32654 13342997 ~ 13346999 (+)
rnf26 rnf26,LOC107718270,LOC107601726,LOC107690456 coding upstream 88545 13287279 ~ 13291108 (+)
cbl cbl,LOC107718267,LOC107601723,LOC107690460 coding upstream 128436 13226503 ~ 13251217 (+)
grik4 grik4,LOC108439963 coding upstream 160434 12957097 ~ 13219219 (+)
arhgef12a LOC107709137,LOC107696008,LOC107586229 coding upstream 437004 12903006 ~ 12942649 (+)
LOC122359520 LOC107718276,LOC107683827,LOC107690448 coding downstream 397 13383348 ~ 13389819 (+)
LOC122358638 LOC107743729,LOC107683828,LOC107690447,LOC107601734,LOC107718295 coding downstream 778 13383729 ~ 13385498 (+)
si:dkey-182i3.10 LOC107743729 coding downstream 7582 13390533 ~ 13393817 (+)
mark4b si:dkey-31m14.7,mark4,LOC107585548,LOC107690446,LOC107683822,LOC107743699 coding downstream 16858 13399809 ~ 13435825 (+)
klc3 klc3,LOC107743695,LOC107601696,LOC107718297,LOC107690445,LOC107683829,LOC107585554,LOC108425834 coding downstream 62894 13445845 ~ 13454565 (+)
G106276 ube4a,LOC107743704,LOC107718272 non-coding upstream 42976 13335308 ~ 13336677 (+)
LOC122358384 NA non-coding upstream 423846 12945077 ~ 12955807 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding upstream 599278 12773457 ~ 12780375 (+)
G106171 NA non-coding upstream 607583 12771795 ~ 12772070 (+)
G106161 NA non-coding upstream 638576 12738051 ~ 12741077 (+)
G106350 NA non-coding downstream 297229 13680180 ~ 13685449 (+)
G106354 NA non-coding downstream 309428 13692379 ~ 13692893 (+)
G106370 NA non-coding downstream 416350 13799301 ~ 13811099 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding downstream 499170 13882121 ~ 13884081 (+)
G106385 NA non-coding downstream 530628 13913579 ~ 13913790 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 530986 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1282007 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1349104 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 2006962 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 2651258 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 533622 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 574246 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1529960 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 2323562 15706513 ~ 15712439 (+)
G107107 NA other downstream 2498163 15881114 ~ 15883510 (+)

Expression


Co-expression Network