clip3 (clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746)


Basic Information

Item Value
gene id clip3
gene name clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15826161 ~ 15837908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259882.1
GAGACGCGGAGAGGAGAGTGGTCCAGCAGCCGTGAGTCACGAGCGTGACGCGCGCAGAGAGAAGGACAAGGCGCAGCATCCTCTCCATCCTCCATAGCACAACAACGGCTGACAAAAGAGTGGAAGAGAAATCGCGGTTTTGAGGCTTGTTTTCAGGCCCAATCACATCAGCAGAATGACTAAAGAGGAAACCTCTGAGGTGGAAGAGGCCCAACCGGCCTCTGAGTTCATCAGCCCGGTTCATGAACCCCGCAAGAAGCCCATAGTGCATCCATCTGCACAGGCTCCACTGCCCAAAGACTATGCGTTTACCTTCTTTGATCCAAATGATCCTGCCTGCATGGAGATTCTGACAGACCCTCGGACCACAATCCCAGAACTGTTCGCCATTATCCGCCAGTGGGTTCCACAAGTTCAGCACAAGATCGACATCATAGGCAATGAGGTATTAAAGAGAGGTTGCCATGTGAACGACCGTGATGGCCTGACAGATATGACACTTCTCCACTACTGCTGCAAAGCAGGAGCTCACGGAGTGGGTGATCCCGAGGCAGCGCTCCGACTTTCCAATCAGCTGATAGCTCTGGGAGCTGATGTGAGCCTGCGCAGTCGTTGGACCAACATGAACGCCCTTCATTATGCGGCTTACTTCGATGTGCCAGAACTGATTCGCGTTCTGCTCAAAGCCTCCAAGCCTAAAGTGCTCAACTCCACCTGCAGTGACTTCTACCACGGCACAGCCCTGCACATCGCAGCCTCCAACCTCTGTCTCGGTGCTGTCAAGTGTCTGCTGGAGCATGGAGCCAACCCCACTGTCAGGAATGATAAGGGTCAGGACCCTGCTGAGGTTGTTCCTGACCCCATGGACATGAGTCTGGATAAGGCTGAGGCTGCTATGGTGGCTAAAGAGCTGAAACAGCTGCTGCTGGATGCAGTGCCTCTCAGCTGTAACCTGCCCCGTGCCACCCTGCCCAACTACGACAACATTCCCGGCAACCTCATGCTCTCCTCTCTGGGCCTCAAACTAGGGGACCGTGTGGTGCTGGATGACACGAAGACTGGCACCCTCCGTTTTTGCGGCACCACTGAGTTTGCTAGTGGGCAGTGGGTTGGTGTTGAGCTGGACGAGCCGGAGGGCAAGAACGACGGGAGTGTGGGTGGGATTCGCTATTTTATCTGCCCCCCAAAACAAGGCATCTTCGCCCCTGTGTCAAAAATTAGCAAAGCCCTTGAGCAGACCCCCTCTTCAGTCACCTCCACCCCAAAAACCCCTCGCATGGATTTGTCCCGTGTAACCGGCaagattaaaaaagagaaaaaagagaaagaccgTGAAAAAGCTCCAAGAAAGAAGTCTCTGTCCGGCGTCAGTTTGGATCCCGATGGAGTCAAGGTTGAGGTTGGGGATCAGGTGTTGGTGGCAGGCCAAAAGCAAGGGATTGTCCGCTTTTTTGGCAAGACAGACTTTGCTCCCGGATATTGGTTTGGTGTGGAGTTGGAGCAACCCACTGGAAAGCATGATGGCAGTGTGTTTGGAGTGCGTTACTTCCACTGTCTGCCCAAATATGGGGTTTTTGCACCACCATCCAGAGTTCAGAGAATTGCAGGGCCCAAAGATCCTCAGGGTGATGGGACACTAGTGAAGAAAGTCCACCAGGTGACTATGTCCCAGCCGAAGCGTAATTTTAATGCCATGCGTTCTCCAAAAGACATAACATCTGAAAGCTCCATATCCAGCAGGTTGCTGTTCTGTTGCTGGTTTCCCTGGATGCTCCGTGCAGAGATGCAGTCCTAAATCCACTGGTTACATCTTTAATTCTATCTACCCCTTTTTGTGTTCCTCCTCAAGATAAAATCCCGCCCACTCTGTGCACTTCCATTACTCATGTGTGCTTCTCTCTGTGAACTACCCAGACTGCTGTCCCGCCCCTTTGACGGCAACtcaatagcaaaaaaatagTGCCTTGTCAAGTAACTAACGTCCTGCATTCCGACGATTGAATTATAGACGAACAATCttttatgaaatcaaaataagGGAAAATCGTTTCTACTAAAAGCCATTCATATCTCTCTATCtgctttggggtttttttgctaAACCACTGTGGGTAGATTATCGGCAGTATTCGAGCTTGATAATACAGTCATAATCCACAAACAACTACGCTTGTATgtctattttaatttgtaaaggtgcttttttgttttgtttgtaaacatGCTGCTGTATTATGTACTTTTGCTGTCTTACTTTACAGTATTTTGTAGTATACAGACTTTGTTTCTTAAGTTTCAGATGCCTTTAAGTGAACTAGTAGGTGACATATTAAtagtaaacataaaatgtttcattgtaACTGTAGTCTGAAAATATTGATGCTGCCAATGTGAAGAAGAAGAGGGTTTTTATCATTGGAGCCCAATACTTTTTTTATCTACAGTGAAACCGTAAGCGTAtagcttaaaatatattaatatgttgcATGAAATAAGCAGGCATGGGCACGTTTTTAGGTCACAAACGTCTCTGAAATGAGGTGAGAGGCCTGCCTTAGATGTTATAAGCTAATAAATcgcaattaatttaattcaaatcaaCCAAAGCGCAAGCTCCACGATATAGCAAAAGCTAAATAATCTCTTTCTTCAAAACAGTTTACCACTTCGGTAATGCAACTCTTAAGAGGAGGCATGTTCATTTTTGACCTTTCATAAAAACGAGGTGacaataagcatttattttataaacccAAATAACCATACAAATCACAATCATGTTTCTCTCaccaaaagaagaaataaataaataaataaaactaattatagtTCATCTAGTATAGTTTGAAGTGAAgtacagtttatattttaacataaatccTCATCTATTGTCTACAGTGTAATATATAAAAGCTGTTAGGCCAGACTACCTATTCCTTTACTCTCGGTTTTCACTCGGATCAGTTtcgtaaatgctgttctttaaaatcCTGATTGTGAAAACAGTATGTGCTTATGATGTTGTAATCAAGTGTGTGGGTAATAACAGCAATATTTACTCTGTGTCAACATGCTATATGAATATGGATAGAAGCTCTCTACTTTATTACCACCTATGGAAGCACAGCATGAGTAAAAAGTGTCTGTCCCTAATAGATGACCTGGGATCAGTTAACAACGAGATCTTCTGCGGCGATCCCAGAGCGGACAGATTTTGTTTAggagagaataaaaaacaacagcttgGCTTGTGCGCTCTCCTTTCTCGTGAACACTTGGTCAAAAACGCAccgatttacaaaaaaaacaaaaaaaaagagcaactcgcaaaactgaaaatgtactgcTTGAGCAGGTCTGAACAGCTTTTGAGTTCTTACGACGCCATGCCatcatttcctttaaaaacaacccaatcTGTGTGGTAGTGACACTGTAGTGAGTAGAATAGTGCATCTTCCGATGGAGTGCAAAGGTCAGCTCACAACAAACCTGAAATTGTGCATTATCATTTTGTGACGTATAGAGTACAGTATATTGTTTTATGGTGACTTGAAGTTGTAGAAAGCATCGTTTACCTTAATTTCACCACAAGTCACGTTCCGTTTTTCGATGCCAAAAGGAGAGTAAAAGTATGACTGTAAATTGACTTTCATAATGTAAGTATCTCGCACTGACCGGTTCACCCTCCATGCTTTCATAGTTTCAGTGTGACATCTAGCATTTGTCAGCAAAGCTTTCTGACATTTTCTATCCAGCTGTGTAATTGGTATAGttcatttgtaaacatttattcgtctgagaaaatatatattttaataatttcacaaGGTACTTTTTTAACGTCCTGTGCTTTGTGTTTTCATGTTAACTATGTCTGTAAATCAGATTAACGTAGATCTCATCATTAATTCGGTTTTGGATTCGATGGACAACATAACTGTACTGCATGCTGTGTATACATTTGCAGGTTTCTTTTTCCTACGGTATATCAGCATGAAAAAGCTTATTAATTCAAGTGAAACTGTAGCTATGGTAAATACATGACTAATAAACGTTAGTGTTTTATACTTA
>XM_043259883.1
GAGACGCGGAGAGGAGAGTGGTCCAGCAGCCGTGAGTCACGAGCGTGACGCGCGCAGAGAGAAGGACAAGGCGCAGCATCCTCTCCATCCTCCATAGCACAACAACGGCTGACAAAAGAGTGGAAGAGAAATCGCGGTTTTGAGGCTTGTTTTCAGGCCCAATCACATCAGCAGAATGACTAAAGAGGAAACCTCTGAGGTGGAAGAGGCCCAACCGGCCTCTGAGTTCATCAGCCCGGTTCATGAACCCCGCAAGAAGCCCATAGTGCATCCATCTGCACAGGCTCCACTGCCCAAAGACTATGCGTTTACCTTCTTTGATCCAAATGATCCTGCCTGCATGGAGATTCTGACAGACCCTCGGACCACAATCCCAGAACTGTTCGCCATTATCCGCCAGTGGGTTCCACAAGTTCAGCACAAGATCGACATCATAGGCAATGAGGTATTAAAGAGAGGTTGCCATGTGAACGACCGTGATGGCCTGACAGATATGACACTTCTCCACTACTGCTGCAAAGCAGGAGCTCACGGAGTGGGTGATCCCGAGGCAGCGCTCCGACTTTCCAATCAGCTGATAGCTCTGGGAGCTGATGTGAGCCTGCGCAGTCGTTGGACCAACATGAACGCCCTTCATTATGCGGCTTACTTCGATGTGCCAGAACTGATTCGCGTTCTGCTCAAAGCCTCCAAGCCTAAAGTGCTCAACTCCACCTGCAGTGACTTCTACCACGGCACAGCCCTGCACATCGCAGCCTCCAACCTCTGTCTCGGTGCTGTCAAGTGTCTGCTGGAGCATGGAGCCAACCCCACTGTCAGGAATGATAAGGGTCAGGACCCTGCTGAGGTTGTTCCTGACCCCATGGACATGAGTCTGGATAAGGCTGAGGCTGCTATGGTGGCTAAAGAGCTGAAACAGCTGCTGCTGGATGCAGTGCCTCTCAGCTGTAACCTGCCCCGTGCCACCCTGCCCAACTACGACAACATTCCCGGCAACCTCATGCTCTCCTCTCTGGGCCTCAAACTAGGGGACCGTGTGGTGCTGGATGACACGAAGACTGGCACCCTCCGTTTTTGCGGCACCACTGAGTTTGCTAGTGGGCAGTGGGTTGGTGTTGAGCTGGACGAGCCGGAGGGCAAGAACGACGGGAGTGTGGGTGGGATTCGCTATTTTATCTGCCCCCCAAAACAAGGCATCTTCGCCCCTGTGTCAAAAATTAGCAAAGCCCTTGAGCAGACCCCCTCTTCAGTCACCTCCACCCCAAAAACCCCTCGCATGGATTTGTCCCGTGTAACCGGCaagattaaaaaagagaaaaaagagaaagaccgTGAAAAAGCTCCAAGAAAGAAGTCTCTGTCCGGCGTCAGTTTGGATCCCGATGGAGTCAAGGTTGAGGTTGGGGATCAGGTGTTGGTGGCAGGCCAAAAGCAAGGGATTGTCCGCTTTTTTGGCAAGACAGACTTTGCTCCCGGATATTGGTTTGGTGTGGAGTTGGAGCAACCCACTGGAAAGCATGATGGCAGTGTGTTTGGAGTGCGTTACTTCCACTGTCTGCCCAAATATGGGGTTTTTGCACCACCATCCAGAGTTCAGAGAATTGCAGGGCCCAAAGATCCTCAGGGTGATGGGACACTAGTGAAGAAAGTCCACCAGGTGACTATGTCCCAGCCGAAGCGTAATTTTAATGCCATGCGTTCTCCAAAAGACATAACATCTGAAAGCTCCATATCCAGGTTGCTGTTCTGTTGCTGGTTTCCCTGGATGCTCCGTGCAGAGATGCAGTCCTAAATCCACTGGTTACATCTTTAATTCTATCTACCCCTTTTTGTGTTCCTCCTCAAGATAAAATCCCGCCCACTCTGTGCACTTCCATTACTCATGTGTGCTTCTCTCTGTGAACTACCCAGACTGCTGTCCCGCCCCTTTGACGGCAACtcaatagcaaaaaaatagTGCCTTGTCAAGTAACTAACGTCCTGCATTCCGACGATTGAATTATAGACGAACAATCttttatgaaatcaaaataagGGAAAATCGTTTCTACTAAAAGCCATTCATATCTCTCTATCtgctttggggtttttttgctaAACCACTGTGGGTAGATTATCGGCAGTATTCGAGCTTGATAATACAGTCATAATCCACAAACAACTACGCTTGTATgtctattttaatttgtaaaggtgcttttttgttttgtttgtaaacatGCTGCTGTATTATGTACTTTTGCTGTCTTACTTTACAGTATTTTGTAGTATACAGACTTTGTTTCTTAAGTTTCAGATGCCTTTAAGTGAACTAGTAGGTGACATATTAAtagtaaacataaaatgtttcattgtaACTGTAGTCTGAAAATATTGATGCTGCCAATGTGAAGAAGAAGAGGGTTTTTATCATTGGAGCCCAATACTTTTTTTATCTACAGTGAAACCGTAAGCGTAtagcttaaaatatattaatatgttgcATGAAATAAGCAGGCATGGGCACGTTTTTAGGTCACAAACGTCTCTGAAATGAGGTGAGAGGCCTGCCTTAGATGTTATAAGCTAATAAATcgcaattaatttaattcaaatcaaCCAAAGCGCAAGCTCCACGATATAGCAAAAGCTAAATAATCTCTTTCTTCAAAACAGTTTACCACTTCGGTAATGCAACTCTTAAGAGGAGGCATGTTCATTTTTGACCTTTCATAAAAACGAGGTGacaataagcatttattttataaacccAAATAACCATACAAATCACAATCATGTTTCTCTCaccaaaagaagaaataaataaataaataaaactaattatagtTCATCTAGTATAGTTTGAAGTGAAgtacagtttatattttaacataaatccTCATCTATTGTCTACAGTGTAATATATAAAAGCTGTTAGGCCAGACTACCTATTCCTTTACTCTCGGTTTTCACTCGGATCAGTTtcgtaaatgctgttctttaaaatcCTGATTGTGAAAACAGTATGTGCTTATGATGTTGTAATCAAGTGTGTGGGTAATAACAGCAATATTTACTCTGTGTCAACATGCTATATGAATATGGATAGAAGCTCTCTACTTTATTACCACCTATGGAAGCACAGCATGAGTAAAAAGTGTCTGTCCCTAATAGATGACCTGGGATCAGTTAACAACGAGATCTTCTGCGGCGATCCCAGAGCGGACAGATTTTGTTTAggagagaataaaaaacaacagcttgGCTTGTGCGCTCTCCTTTCTCGTGAACACTTGGTCAAAAACGCAccgatttacaaaaaaaacaaaaaaaaagagcaactcgcaaaactgaaaatgtactgcTTGAGCAGGTCTGAACAGCTTTTGAGTTCTTACGACGCCATGCCatcatttcctttaaaaacaacccaatcTGTGTGGTAGTGACACTGTAGTGAGTAGAATAGTGCATCTTCCGATGGAGTGCAAAGGTCAGCTCACAACAAACCTGAAATTGTGCATTATCATTTTGTGACGTATAGAGTACAGTATATTGTTTTATGGTGACTTGAAGTTGTAGAAAGCATCGTTTACCTTAATTTCACCACAAGTCACGTTCCGTTTTTCGATGCCAAAAGGAGAGTAAAAGTATGACTGTAAATTGACTTTCATAATGTAAGTATCTCGCACTGACCGGTTCACCCTCCATGCTTTCATAGTTTCAGTGTGACATCTAGCATTTGTCAGCAAAGCTTTCTGACATTTTCTATCCAGCTGTGTAATTGGTATAGttcatttgtaaacatttattcgtctgagaaaatatatattttaataatttcacaaGGTACTTTTTTAACGTCCTGTGCTTTGTGTTTTCATGTTAACTATGTCTGTAAATCAGATTAACGTAGATCTCATCATTAATTCGGTTTTGGATTCGATGGACAACATAACTGTACTGCATGCTGTGTATACATTTGCAGGTTTCTTTTTCCTACGGTATATCAGCATGAAAAAGCTTATTAATTCAAGTGAAACTGTAGCTATGGTAAATACATGACTAATAAACGTTAGTGTTTTATACTTA

Function

symbol description
clip3 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP3 (CAP-Gly domain containing linker protein 3).

NR:

description
PREDICTED: CAP-Gly domain-containing linker protein 3 isoform X1

GO: NA

KEGG:

id description
K10423 CLIP3_4; CAP-Gly domain-containing linker protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259882.1 True 4074 mRNA 0.43 14 15826161 15837908
XM_043259883.1 False 4071 mRNA 0.43 14 15826161 15837908

Neighbor

gene id symbol gene type direction distance location
gipr gipr,LOC107548593,LOC107714193,LOC107685094,LOC107756746 coding upstream 7015 15800729 ~ 15819146 (+)
LOC122358489 LOC107756729,LOC107589721,LOC107685095 coding upstream 164506 15658988 ~ 15661655 (+)
LOC122358640 cryba1b,LOC107581934,LOC107731981,LOC107713158,LOC107587221,LOC107704801,LOC107675182 coding upstream 178312 15644563 ~ 15647849 (+)
LOC122359367 LOC107669715,LOC107548559,LOC107743735,LOC107757374,LOC107685158,LOC107589739 coding upstream 189281 15624216 ~ 15636880 (+)
nova2 nova2,LOC107669728,LOC107589717,LOC107685091,LOC107756760,LOC107548550,LOC103039352,LOC108440380,LOC108277822,LOC104927796,LOC100701682 coding upstream 258612 15516104 ~ 15567549 (+)
si:ch211-137a8.2 LOC107714189,LOC107669729,LOC107548595 coding downstream 7666 15845574 ~ 15865410 (+)
si:ch211-137a8.4 si:ch211-137a8.4,LOC107669730,LOC107714190,LOC107548596,LOC107756666,LOC107682371,LOC107589723 coding downstream 34173 15872081 ~ 15877855 (+)
capns1b capns1,capns1b,LOC107669758,LOC107587742,LOC107682413 coding downstream 51446 15889354 ~ 15893250 (+)
zgc:101731 zgc:101731,LOC107587749,LOC107669759,LOC107757427,LOC107714187,LOC107683430,LOC108425805 coding downstream 55489 15893397 ~ 15900634 (+)
zgc:113149 LOC107669760,LOC107714186,LOC107587722,LOC107756630 coding downstream 63386 15901294 ~ 15906396 (+)
G106941 NA non-coding upstream 188132 15637174 ~ 15638029 (+)
G106924 NA non-coding upstream 254999 15502558 ~ 15571162 (+)
G106926 NA non-coding upstream 315051 15510317 ~ 15511110 (+)
G106898 NA non-coding upstream 343489 15397722 ~ 15482672 (+)
G106873 sarm1,LOC107548548,LOC107669752,LOC107743642,LOC107685076,LOC107756984 non-coding upstream 534998 15290829 ~ 15291163 (+)
G107113 NA non-coding downstream 56225 15894133 ~ 15894624 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding downstream 162307 16000215 ~ 16002131 (+)
G107141 NA non-coding downstream 231576 16069484 ~ 16069741 (+)
G107145 NA non-coding downstream 301905 16139813 ~ 16167005 (+)
LOC122358549 NA non-coding downstream 498906 16336814 ~ 16357622 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 113722 15706513 ~ 15712439 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 897936 14912911 ~ 14928225 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 1864354 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 1908899 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 2977494 12837582 ~ 12848667 (+)
G107107 NA other downstream 43206 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 166961 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 251849 16089757 ~ 16236341 (+)
lyrm9 lyrm9,LOC107756492 other downstream 675400 16513308 ~ 16514221 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1951937 17789845 ~ 17811203 (+)

Expression


Co-expression Network