vmp1 (vmp1,LOC107582631)


Basic Information

Item Value
gene id vmp1
gene name vmp1,LOC107582631
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10325905 ~ 10336412 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259927.1
ACACGGCGAGGCTGCTGTGCGCGCGATATCCTAAATTAATATTCACTAACTTTATATAATAACGAGAGCACGGTGAAAAGGATTTATTCCAAATCTAAAGCTCGTCGAATTTTAGCGCTGTGATCAAATCTACTGGAAAGATGCCAGTCAACGGGCAGCCGCTCTCGCcggggcttttattttgaaaggccGGCGCCGTTCTCCAGCTGAACGTGAGTCATTTCCTGTGGCTGTTGGTGTCGCTTATTGCTGCTGTCGGGACGGAAGAGTGGTTGCAGGTGTCAGAACTGTAAACAGTAGTGGGAGATGGCTGCAAATGGAGCAGAATGTGAACAGCCACAGAAAAGACTAGGACCTAAAGACAAGCAGAATGGCAGTTCTACAGATTCatctctgagagagagaaagcagctGGACAGGGAAGAGCGTCTCTCTTTAGTACTGTGGAAGAGGCCTTTAACCACACTGCAGTATTTCTGCATAGAAACCCTCATTACCCTGAAAGAATGGACGTGGAAgCTTTGGCAGAGAAGAGGTGTGGTATTTTTGACCATAgtccttttttcatttttctcaaTGGCTTACTCAATAGAAGGAGCACATCAAGAGtATGTACAGTACCTGGAGAAGAGGTTCCTGTGGTGCGCCTACTGGGTAGGCCTGGGTATTTTGTCTTCAGTCGGTCTCGGCACTGGACTGCACACTTTCCTTCTGTACCTGggtcCACACATAGCTTCCGTCACCCTGGCTGCATATGAATGTGGCTCTGTGAATTTCCCCGAGCCGCCCTACCCAGCCCAGATAGTGTGTCCGGAGGAGGAGGTCCTGCAGGAGAGCGTCTCACTATGGACCATCATGTCGAAGGTTCGCCTGGAGGCCTGTATGTGGGGTGCAGGCACAGCTATTGGAGAGCTGCCTCCTTACTTCATGGCACGGGCGGCGCGGATGTCTGGAGCAGATCCTGATGATGAAGACTATGAGGAATTTGAGGAGATGCTGGAGCAGGCTCAGAGTGCACAGGATTTTGCAACAAGAGCCAAGCTTGCAGTGCAAAACATGGTGCAGAAAGTGGGATTTTTTGGCATTCTAGCTTGTGCCTCCATCCCGAATCCCTTGTTTGACCTGGCTGGAATCACCTGCGGTCATTTCCTGATTCCATTCTGGACCTTTTTTGGAGCGACTCTCATCGGAAAGGCCATTATTAAGATGCACATTCAGAAACTATTTGTTATCATAACATTCAGCAAGCACATAGTGGAGCAGATGGTCTCTCTGATCGGTATTATCCCTGGAATCGGAGCATCTCTTCAGAAACCTTTCAGGGAGTACTTGGAGGCCCAGAGAGCCAAGCTTCATAACCCAGCAGGCAATGGAGCAACAGCAGGTGAAAGCTGGCTCTCGTGGGTTTTTGAGAAAGTGGTGCTGGTCATGGTGTGCTATTTTATTCTGTCCATCATTAACTCCATGGCACAGAGCTACGCCAAGCGTCTCCAGCAGAAGAAGTACTCAGAGGAGAAAACAAAATGACGGACTCACAGAGAACCATCTCACACTCCTGTTTTGGAACCTACGAAATATTTAAGCTAAAACTGCTTCATGAGCACTGATTTATGTGCGCTTCTGTATGTTAACGTTCATTCAGATCCCTTTAGTTACGTGGAGTCCCTCTTCATTCGTCTGTAGTGTGCTCGGCTATTTAAAATCAGATTAAACATGGAGGTTTTTGTCTAGTCTAACAGTCTAGCTAACAGGCTGTGTGGAGTCATATTTGTTGCAATGCCTTATGCAACATTTGGAGGTCATGCTTCCATTGAAGTGAATACAGTTCTTAATCAAtagattgatttatttaatttctaacaTGCTGGTATGGATGGGCAGGGTCTGTTTTGTGAGGTTTCGTGATTGGAATTTTCAgggatagttttttttttaatcgatattgatgtcattttgtatttctttaacTGTTTGAAGAGGATAGCAATATCAACTCAGATCATCGTGGTTTCTAAATAGTTTGCACATCTTGTAAAATAACGTTTTTGACTATGCGCACATGATGTTCATTCTCTGGTCTTAAACCGAAACGTCACAAACTAGTGGATGTAACTTTTAACCCTGACGAAATTTAAGatgtaatatttgcatatgtttgtgcattttgaTCTAAAACTATAAGTTGATCCATACTTTTCTCTTATTTTGGGCTGAAGTATTTGTGTAGCTAATtatgattttttccccccagaacTATTGTTACATAATTTGTTTGacattaaattcattaataCA

Function

symbol description
vmp1 Acts upstream of or within autophagy and lipoprotein transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment membrane; plasma membrane; and vacuolar membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in several structures, including EVL; digestive system; intestinal bulb primordium; nervous system; and optic vesicle. Orthologous to human VMP1 (vacuole membrane protein 1).

NR:

description
vacuole membrane protein 1-like isoform X1

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21248 VMP1; vacuole membrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259927.1 True 2295 mRNA 0.44 12 10325905 10336412

Neighbor

gene id symbol gene type direction distance location
cltcb cltcb,cltc,LOC107554261,LOC107659923,LOC108443353 coding upstream 485 10300340 ~ 10325420 (+)
dhx40 dhx40,LOC107659925 coding upstream 26630 10286955 ~ 10299275 (+)
LOC122358538 NA coding upstream 84657 10238177 ~ 10241248 (+)
relb LOC107715143,LOC107582588,LOC107701429,LOC107659928,LOC107727919,LOC107554269 coding upstream 126627 10190587 ~ 10199278 (+)
clptm1 clptm1,LOC107727917,LOC107715057 coding upstream 138734 10179266 ~ 10187171 (+)
rps6kb1b rps6kb1b,rps6kb1,LOC107701421,LOC107597508,LOC107659922,LOC108443350 coding downstream 7024 10343436 ~ 10350306 (+)
LOC122358985 LOC107701419,LOC107713466,LOC107728785,LOC107597592,LOC100001991,LOC107582628 coding downstream 95153 10431565 ~ 10441298 (+)
LOC122359095 LOC107713423,LOC107701398,LOC107659919,LOC107717187,LOC107597513,LOC107582627 coding downstream 185281 10521693 ~ 10539063 (+)
LOC122358614 LOC107713423,LOC107701398,LOC107659919,LOC107597513,LOC107717187,LOC107676612 coding downstream 208315 10544727 ~ 10558178 (+)
LOC122359094 LOC107713423,LOC107701398,LOC107597513,LOC107659919,LOC107717187 coding downstream 228077 10564489 ~ 10580681 (+)
G105242 NA non-coding upstream 147679 10177872 ~ 10178226 (+)
LOC122358545 NA non-coding upstream 148077 10171862 ~ 10177828 (+)
G105240 NA non-coding upstream 150283 10173307 ~ 10175622 (+)
G105199 LOC107582590,LOC107715485,LOC107701431 non-coding upstream 156193 10149962 ~ 10169712 (+)
G105225 NA non-coding upstream 194040 10129551 ~ 10131865 (+)
G105395 NA non-coding downstream 354 10336766 ~ 10337446 (+)
G105411 NA non-coding downstream 51071 10387483 ~ 10387744 (+)
G105413 NA non-coding downstream 55047 10391459 ~ 10391718 (+)
G105416 NA non-coding downstream 68607 10405019 ~ 10405333 (+)
G105458 NA non-coding downstream 127790 10464202 ~ 10464899 (+)
G105248 NA other upstream 118453 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 215462 10093455 ~ 10110443 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 610216 9703426 ~ 9715689 (+)
G105011 NA other upstream 652560 9669634 ~ 9673345 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other upstream 701933 9588789 ~ 9623972 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 16749 10353161 ~ 10390600 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 385560 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 1033836 11370248 ~ 11372691 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 1691143 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 1757545 12093957 ~ 12097646 (+)

Expression


Co-expression Network