XLOC_006703 (BX005005.3)


Basic Information

Item Value
gene id XLOC_006703
gene name BX005005.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31042514 ~ 31051156 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012911
aaattcttacagaccCCAAACTTATGGTGGTTTATTTGTAACAATCCCTTTCCGTCTTGTTTATGCACAGTCTATCATGAAAGTTCTGGAAAATCCTAACAGTTGGAATGCTTTCCGCACTGCTGGAGGATTTACCGGCTTGCTCTCCATTGTTGTGGACATGGAAGGATCTCTTTTGGAAACCCCAGCGGGTCCGTGGGCTTCACTGAGCCGCCAGAGCCTCGTTGAACTGCTTCTTTTCACCCTACACACCATTGCCTTTGCTGTTCACATCCATCCAGTCAACGCACACTTTTTTCACACAGTTGGAGTCTGTGAGAAGCTGGGTGAGGCCCTGCTGCATCTTGGCTGTTTTCAGAAAGGGGATCCTGTGGAATCAGACAGAGACAGTTCGGCCTACAGGACTTTCCAGCAGTTTGTGGAGGTGGTGGAAAAGCCAGGACCTCAGCTGCCAGCACCTTTAGGAGACTGTGTTAAGCTGCTGGGCTTCCTAGAACAGTTTGCTACTGGTGTGAGCTTGGCTGCTGATCCTTGCACAGGCTTGCAGGATAATAATGAAGCTGGCGAGATTCAGATCATAGACTCAGGTCAGACACCAGAGGAATCGACCAATAAGGATGAAGCTTTTAATCACGTTAGGGCTCCAAGTGTATCTGTAGTATCTATAGAATCGGGGAGGATTTACGGTAACTTTACAATCCTTCATCCTGGAGCTGTTAAGCTCATCATGACTCTTCTGCCTAGTATTTACTGTCCCAGTGACCCTTGTGTAAGTAAAACCAcaatcacatactgtacactaaatgatttaaaaatatatatgctttAAATTAATACCTTGAGCTCCTCAGGGCAGGATGTATTTAGTGTTAAATAAtccataatatattatttaagttTGCTGATTTGGTGAAAACTGATTtcctgcttatttatttatttttgtagaaactgatgttttttttcagggttttctttcatttattgaAAGAGTTAAaagaacataatttatttatttatttattttttttttataaatgttccttctgccacttttaatCAATTTGATGCATTCTTACAGCAACTACAATAATTCTAGCCATTTTTTTCTGTAGTTGTCAGAGGAGCTGCAGCTGGCTGTGGCTCATCATGTCCAGACTCTGGTGAAGTCCGAGAGAAACAGGCAGATCATGTGTGAATTTGGTCTGTTGTCTACACTGTTGACTCACTGCAAAGACATCCTCATCGACAATTCCCATTCGCTACACTTGCCCATTGTCCGGATTCTCGAGAAACTTGCCTCTCAGTCCATGGATCAGAAGTGCCTGAGGTCAGCATGCATTTGCTGTTAACATCCtcacaaaaaaatgcaatatgatAAATAGATGATTATATGATTGTATGCTGTTAAATAGTGTGCTTTGCTTTATATTAGGCACTTCCTGTGTCTTGGGGATCCACTGATGTGTTGTGGAGAAAATCAGCCTTCTGTCACCTTAGAAGAGGCCAGCTGCACAAGTACAGTTCCTCCCAGTCCTCTCACACTTCCTTTTTGGATTACTGCCTGTTTCGTGAAAAACATTTGATCTTATTGTTACATCCATTTGGATTTCAATACAATAATGAtggttttatattgtttttggtTTTTACTTTCACAGATCAGACCAAAGACTCTGAGGAGAACAACAAGAAGTCATTGAAAAGGGCAATGAAAAGAAGTTTTAGTTTACTGAAAACACCTTTAGACAGTGGGATGGTAGTTCCTCTTCACAGAATCATAAGTCTTGTCTCCATCACGTCACCACGGAACTTTCAGCCACACAAAGTCTCCATTTCCCCTTCCTTTGTGGAGTTTGACATGACCGACAGTGGCTATGGGTAAgtgtttaataaacaattaatatggACCCTTTCACAAGGcgcgtttaatggtcatcagcatcttaaatccttgaaaatttttatattttaaaacatatgccaatgtattatatacatttattaaaatgtattatatcatcttttcataaaaaaaataataataaaataaaaataataaaaaataatcgcttatgtgaggtgtttctaatgccgTTTCTATGGGTGGG
>TCONS_00012912
TCTCTTTAAAGTTTGAAAATGTACAGTACATCTAAAGTCATGGCATCTGATCGATTTATTGCTGTTAACAGTTTTCATCAGGGACCTGGGGATGATTCCCTACGTGAAAATCTTTCTGGATGTTGAGCAGTTCCGCAGTCCCGCTCTCTGCATCCTGGAGCAGCTTGCTGAGGTGAATCCAGAGGAATACATGAGCACTGCCATTGGAGCGCTTTGCTCCTCTACTGAGAGCGAGATCAAACTCAAACAGGATCTTTTACAGTCTATCATGAAAGTTCTGGAAAATCCTAACAGTTGGAATGCTTTCCGCACTGCTGGAGGATTTACCGGCTTGCTCTCCATTGTTGTGGACATGGAAGGATCTCTTTTGGAAACCCCAGCGGGTCCGTGGGCTTCACTGAGCCGCCAGAGCCTCGTTGAACTGCTTCTTTTCACCCTACACACCATTGCCTTTGCTGTTCACATCCATCCAGTCAACGCACACTTTTTTCACACAGTTGGAGTCTGTGAGAAGCTGGGTGAGGCCCTGCTGCATCTTGGCTGTTTTCAGAAAGGGGATCCTGTGGAATCAGACAGAGACAGTTCGGCCTACAGGACTTTCCAGCAGTTTGTGGAGGTGGTGGAAAAGCCAGGACCTCAGCTGCCAGCACCTTTAGGAGACTGTGTTAAGCTGCTGGGCTTCCTAGAACAGTTTGCTACTGGTGTGAGCTTGGCTGCTGATCCTTGCACAGGCTTGCAGGATAATAATGAAGCTGGCGAGATTCAGATCATAGACTCAGGTCAGACACCAGAGGAATCGACCAATAAGGATGAAGCTTTTAATCACGTTAGGGCTCCAAGTGTATCTGTAGTATCTATAGAATCGGGGAGGTAGGTACACTCATAGTATGCTATTTCtaaatactatttattattaaaattgcattattatttgttatttaatttaattttgttttgtttaatatttaatttattttttacatttaatttaattaaattttatttttaatttaatttaataaaattgtatttttta

Function

GO:

id name namespace
GO:0071546 pi-body cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0043186 P granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031267 small GTPase binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012911 False 2111 lncRNA 0.40 2 31042514 31045645
TCONS_00012912 True 1036 lncRNA 0.42 2 31044802 31051156

Neighbor

gene id symbol gene type direction distance location
XLOC_006702 wdfy4 coding downstream 17009 31024711 ~ 31025505 (-)
XLOC_006701 wdfy4 coding downstream 24554 31015547 ~ 31017960 (-)
XLOC_006700 wdfy4 coding downstream 34239 30985047 ~ 31008275 (-)
XLOC_006699 CR762493.2 coding downstream 170075 30855319 ~ 30872439 (-)
XLOC_006698 NA coding downstream 230331 30808963 ~ 30812183 (-)
XLOC_006704 BX005005.2 coding upstream 1380 31052536 ~ 31061816 (-)
XLOC_006705 BX005005.1 coding upstream 24677 31075833 ~ 31075947 (-)
XLOC_006706 NA coding upstream 38430 31089586 ~ 31092400 (-)
XLOC_006707 NA coding upstream 51751 31102907 ~ 31122838 (-)
XLOC_006708 CR931802.2 coding upstream 75293 31126449 ~ 31127046 (-)
XLOC_006471 BX537274.2 misc downstream 20777609 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 30216289 825904 ~ 826225 (-)
XLOC_006693 CT025887.1 non-coding downstream 410295 30632105 ~ 30632219 (-)
XLOC_006691 NA non-coding downstream 471371 30568567 ~ 30571143 (-)
XLOC_006690 NA non-coding downstream 491005 30549409 ~ 30551509 (-)

Expression


Co-expression Network