G8699


Basic Information

Item Value
gene id G8699
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 13272585 ~ 13311429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU9586
TCTTTCAACCAAGACAATCAATGACTAAGTAAGAGATCGCTTTTCATACAAAAATGCCTTTGCCGTTATAAAACCAGCATTTCTTGAAGAAATTGCATGTAGAAATATAAAGAACTTATTGGTCAAGAACAAACCTTGGTGAAATATCACAGCCTTGTCTCATAAAAGCTCCAAGAGAGAACCAAAGGCTGTTGAAAATCCCAAACTCATTAGTTGACTCGTTGGTCTGGATCTGGCCGTCCTCATATTCCTCTGTGTGCCACTCATATGGACTGAAACGACTGACCAGGAAAAGCACCACGCTCACCCCGATGTAGGCAAACACGATACACATCCAGATCTCATAGGCCAGAGGGTCCAGGAATGAGAACACACCAGGCTTGGACTTCTGAGGCTTCTTGATCATGATGGAGATGCCCAAACTCATGAATGGCTTTGAGAAGTCGATGACTTCTTCTCTGACTAAAGTGATAGTCAATGGAGCCACTGCTATGTCAGCTTTCCCATAAACTAACTCTCCAACCATTCCATTCCAGATCTTCGTCTCTGCATCTCTAGCTCCATATTTGCCATCTCCCACTATTTTCAGCTGATATTTAAATCCACAGTGCTTTGCTATTTCAGCTGCCAAGTCCACACAGTACCCCTCATATCTTTCATTATCCATAAAAAGGTCAGCATTCTTCTTCAGCATTACATATGGTGCTTCTAGAATGGTGGTGACGATCACAGTCTTGTTTTCCAGCCCCATTGTATCATTTGGGAAAAGATCAGACTTTGTCACAACCATTTTATCAACTTCATTCCAATAGCCAATCTTAACTGGTCCATTGCTTTTCAGTTCCATGACATTGACGGTGTAATTCACCCTCTTTCCATATTGGTCAAACTGAATGTTACCAGTGAGACCATCAACTCTCACCTGTTTTAGGGCACGCTCTATCTCAACCCCCTGTGCCCACGGTACAGCTGGATTAGCCAGGCAGTCTCCATTGTTAGCTCTACGGGAGATGTCAATTCGCTGTTTGTGCAGGTAGCGGAAGGCCTCAGTCATCACCTGAACTGCGTCGTATGTCAGTGCTGAAGTGTACCGTATTTTGCTGTCTGCTCCAGGATATTCTTTTTCCTCCAGAGCTTCCCAGCGCTGGTCAAATTTGGACACCAGGGGGTCATCGAAATCCACAATCTGAAAGCCTGATACATTGGCTCCACCATATTGGATTTTTGAAAGATCTCCATCCACAAACCCCAGGTTTGCTATGATGTAGTGATATCCCTTCACATGCCTGCCAATAGTTATCACCTGCTCCATGATGTCTTTAACTTTGTCCTGCTCACAGTCAAGGATAACCCTCCGCTCCTTCTTGGTTTCTAGGTCCTGAAAGAGCGAGCGATATGCTTCATCCTTTCTCTCATCCTTCATGTTGCCCACGTTGATGGCGGTCACCTGCCATTTCTTCTCTGCTGCTGTGTCCAGCACAACTTGGAGTGTGGTAAGTCCTCGGTCACTGTCGTACAGGTAGGCAAACTTGTCCCATTTGTAGTACTCAATGAGACTCAGGAGAGGACCTTTGATGTCTGGTCGCATCTGAATGATAAACTGCTGATTTCCATCCAGGGGAAAGCTTGGTGTGATGAAGGAGACGTGAAGTGTCCCGCAGAAAGACGTTATTGTGTTCACTGACTTCTTGTCATAAAATCCAAAAATAGCATAAACTCCTCTTGAGAACTGAGAACAGAAGCAGTTAGTTACAGCGAAACTGTTAGCTACTTCCAGATTGTCGATGTGAGGCGTCAGTCTAAATTCAGCAGTTCCGAACTGAACCATTCCGATCCGAAACGCGCTGTATTCCTGATCAGCTCCCCTCGGAAACAAGCCCCCAATTTGAACACTTGGAGACCCTCCAGTTGACAACCCACATAAAAGGGAAATGAGACAAATCGATAAATTCTTAAACTGTTGCATCTCCACGACAGTGTGTTTACCCACTGTATGAAGGAAGTATTTGTCGTTTACACAGTGTTTAATCAAATCCGTAACATATTGAGGCGTTGCTGGCGAATGAGAGCGGCTGCTGTCTGCAGGTGGTTCCTCTATCGCTGACTCCCGCCTCAGTCCCGT
>TU9590
GTTGAATAATGCAGTGCAGCGCTTTACCTCGGTCACTGTCGTACAGGTAGGCAAACTTGTCCCATTTGTAGTACTCAATGAGACTCAGGAGAGGACCTTTGATGTCTGGTCGCATCTGAATGATAAACTGCTGATTTCCATCCAGGGGAAAGCTTGGTGTGATGAAGGAGACGTGAAGTGTCCCGCAGAAAGACGTTATTGTGTTCACTGACTTCTTGTCATAAAATCCAAAAATAGCATAAACTCCTCTTGAGAACTGAGAACAGAAGCAGTTAGTTACAGCGAAACTGTTAGCTACTTCCAGATTGTCGATGTGAGGCGTCAGTCTAAATTCAGCAGTTCCGAACTGAACCATTCCGATCCGAAACGCGCTGTATTCCTGATCAGCTCCCCTCGGAAACAAGCCCCCAATTTGAACACTTGGAGACCCTCCAGTTGACAACCCACATAAAAGGGAAATGAGACAAATCGATAAATTCTTAAACTGTTGCATCTCCACGACAGTGTGTTTACCCACTGTATGAAGGAAGTATTTGTCGTTTACACAGTGTTTAATCAAATCCGTAACATATTGAGGCGTTGCTGGCGAATGAGAGCGGCTGCTGTCTGCAGGTGGTTCCTCTATCGCTGACTCCCGCCTCAGTCCCGT
>TU9592
TAGTCAGCTTTTATTTAGAAAGGATCCCAAAAAATAAACAAGTTGGCACACATTCATTTACAAAATGCTAGAGAGAGAGAGTGGTCCTTAAAATTACATGGACTTGTTCGACTAATATTAAGTATATCATGACAAAACCAAAGGTGTTACCCAGTTATCTGTCTCCCAGTCTAGAGCGAAATAATGAGGAGAGAAAGGCTGAAGAAGTGAGAGAAAAAAGGACCAATAAAAATCATTCAAAACTGTACACAATTGTGATAATTATCTAAGTTTACAAATATACTCTCACTTTTGGGGACATCTTTTGTTTGTTAACCTTGGCTTATTGCAATATCAAGAGTTAACTGTTACAGTTGCCACTGCTTTTATAGGAAATAGTCATTTAACTGTAAGATAAACTGTGAATCATTATCATTATCAAACAACATGTTCTCTCGCGGTAGGTATCTTAAATACTGAAGAATAAGCGCAGATGTTTTTGCCCGTAATATGGAATTTCTCACATTTTATGAAAGAATATATTAGAACTGGATGCTTGGAAAACAAATTCAAGATGCAGAGTGAAAATATGAAAAAAGCCATATTGTGGTGTGAATGCTAAAATAGCTATAAAGTAAAAACAAACCCAAAAAAATGAAATAAATCACCATCCAACTGTACATTTAGTAACAAAACTTACAGAATGTATTGACTACATTCACATTGATGACAGTTTAATATATGACTATATTTATCAATAATTTTGGCACATTTAATTATTTGGCATTTTTAACAGAGCATTTTGTTGATGTGTATGCTTCTATTCATTTCACAGCAAAACATATGCAATAATACAATAGGTACGTTTTTAAACATTTTCCTTTTTTGTTGTTCATATTGTAAACACATTTTTCTTTTTTAATATAACCGCTACCCTGATTTTCTTGATAAACAAGAAAATACAAACAGATTCTTAAAACCAAACAAGTTGATGAAAGTAAGAGAACATAACTGCGGCACCCACTTTTCAAACAGATGTCAAGCATTGCTAGATATTTCATATCAACACCAAAATGTTAATGAATATATCAGAAGAGGACTAATAAATTACAAGATAAGCAACATATTTGGCATTAAAATGTGAAACTATTAGCTAAGCTCTTAAAAGTATGTCAAGATTATGATTTACAGCCTTAATTAACTGGTATGTAAGCAGGTTTATTTAAAAGCCATTTTCTGTGAAAATACATAAAAATACTTTGATTTTTTTTGTTTGTTTGTTTGTTTGTTTTATTAATAAAAAGACATTTCACATCCTGAAGCAAATAATGGTAAAGTGTGCTTGAGCCGAAATAGACATTGGATGGCGTCAGCTACGAAAACAGACAGACTTTATTGACTTCTCTCTTTCCCGCTCAGAGCTTCTGTGAGTTTCAAGTTTGTCGTCAAAAATATCCGTTACGGGGGGGTAGATGTCATCAGCTCGCTAAGCGAGTGTCTTTATCTCAGTCGGCATGTTTCCAATAGGAGAGTGCATCTTTTGTTATAAAGGGCCAAAGAAGTATTATGTCTCTGTGACATCAAATGAGGCCTCCGTCTTCCATTCAGACGAGAGATATATGGGAGAAAGCGACAGGAAAGAGAATAGAATGCGCTCTATTGAAAACCATTGTGTAAGGCACTCGGCAGGTTCTTATCCATCAGGAGAGATCAGTCAGACTGACGTTCATTCCCACACCAGGTCTAACAAAGGGCACCGCATGTACTGCTTTGGGGAACTCAGGACTCATCACACGTCCATTCTCGCCAGTACTTCCAGTTATAGACAGCCTCGCTTTGCTCCTCATAGCGTCCGAAAAGGTCACCTGGAACACACACACACATAGACGCGAACGGAGAAACAAACATCCACACGCACGCACACCAAACAGAGAGAGGGCAGAAAGTTAGAGCGCATCCCACAAAAGGGCTTCAGTCTTATTTTTAAAATGTTTAGTTGAAAATGCAGATGTGAATTTGATGTGGTGGAGAAACATTGAAAATCATATCGCAAGCAGGGAATGAGGGAGATGGGCGATACAACAACAAAAACAGTCATACATGACAATGGGGTTGACAGAACAAAATCACACGGGATCTACAAAAAACTTTTCTCTCCAATATGTGTGCAGTAGATGGGGAGAAGTCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
>TU9587
TAGTCAGCTTTTATTTAGAAAGGATCCCAAAAAATAAACAAGTTGGCACACATTCATTTACAAAATGCTAGAGAGAGAGAGTGGTCCTTAAAATTACATGGACTTGTTCGACTAATATTAAGTATATCATGACAAAACCAAAGGTGTTACCCAGTTATCTGTCTCCCAGTCTAGAGCGAAATAATGAGGAGAGAAAGGCTGAAGAAGTGAGAGAAAAAAGGACCAATAAAAATCATTCAAAACTGTACACAATTGTGATAATTATCTAAGTTTACAAATATACTCTCACTTTTGGGGACATCTTTTGTTTGTTAACCTTGGCTTATTGCAATATCAAGAGTTAACTGTTACAGTTGCCACTGCTTTTATAGGAAATAGTCATTTAACTGTAAGATAAACTGTGAATCATTATCATTATCAAACAACATGTTCTCTCGCGGTAGGTATCTTAAATACTGAAGAATAAGCGCAGATGTTTTTGCCCGTAATATGGAATTTCTCACATTTTATGAAAGAATATATTAGAACTGGATGCTTGGAAAACAAATTCAAGATGCAGAGTGAAAATATGAAAAAAGCCATATTGTGGTGTGAATGCTAAAATAGCTATAAAGTAAAAACAAACCCAAAAAAATGAAATAAATCACCATCCAACTGTACATTTAGTAACAAAACTTACAGAATGTATTGACTACATTCACATTGATGACAGTTTAATATATGACTATATTTATCAATAATTTTGGCACATTTAATTATTTGGCATTTTTAACAGAGCATTTTGTTGATGTGTATGCTTCTATTCATTTCACAGCAAAACATATGCAATAATACAATAGGTACGTTTTTAAACATTTTCCTTTTTTGTTGTTCATATTGTAAACACATTTTTCTTTTTTAATATAACCGCTACCCTGATTTTCTTGATAAACAAGAAAATACAAACAGATTCTTAAAACCAAACAAGTTGATGAAAGTAAGAGAACATAACTGCGGCACCCACTTTTCAAACAGATGTCAAGCATTGCTAGATATTTCATATCAACACCAAAATGTTAATGAATATATCAGAAGAGGACTAATAAATTACAAGATAAGCAACATATTTGGCATTAAAATGTGAAACTATTAGCTAAGCTCTTAAAAGTATGTCAAGATTATGATTTACAGCCTTAATTAACTGGTATGTAAGCAGGTTTATTTAAAAGCCATTTTCTGTGAAAATACATAAAAATACTTTGATTTTTTTTGTTTGTTTGTTTGTTTGTTTTATTAATAAAAAGACATTTCACATCCTGAAGCAAATAATGGTAAAGTGTGCTTGAGCCGAAATAGACATTGGATGGCGTCAGCTACGAAAACAGACAGACTTTATTGACTTCTCTCTTTCCCGCTCAGAGCTTCTGTGAGTTTCAAGTTTGTCGTCAAAAATATCCGTTACGGGGGGGTAGATGTCATCAGCTCGCTAAGCGAGTGTCTTTATCTCAGTCGGCATGTTTCCAATAGGAGAGTGCATCTTTTGTTATAAAGGGCCAAAGAAGTATTATGTCTCTGTGACATCAAATGAGGCCTCCGTCTTCCATTCAGACGAGAGATATATGGGAGAAAGCGACAGGAAAGAGAATAGAATGCGCTCTATTGAAAACCATTGTGTAAGGCACTCGGCAGGTTCTTATCCATCAGGAGAGATCAGTCAGACTGACGTTCATTCCCACACCAGGTCTAACAAAGGGCACCGCATGTACTGCTTTGGGGAACTCAGGACTCATCACACGTCCATTCTCGCCAGTACTTCCAGTTATAGACAGCCTCGCTTTGCTCCTCATAGCGTCCGAAAAGGTCACCTGGAACACACACACACATAGACGCGAACGGAGAAACTTCATGCGCTTGGCCTCAGCTCGGGACTTGTAACAGAACTCGACCAAGGCCACCAGCATGGCCAAGCCCAGGCCGCCCACTAGGATGTAGAAGACCCCAGCCACATTGCTCAGGCTGAGAGCGCTGGTCTTCTCCTTGGAATCACCTCCCCCGCTGCCGCACTCTCCCTTGTCGTACCACCATTTGTTTTTCAATTTGTCCAACAGGCCTTGTTCATTCAGTTTTAGTACTGCGAGGTTAACCGCATTTCTTAATGAGGATCCTTTGGGGGTGGCGATGCCGTAGCCTTTGGAGTCCAGGTTCCCTCCCACCTTCATAGTGTCACAGGGTTTGCGCTGCTCGATGTACTCATTCATGGTGGACTCCAGCAGGTATGCATACTTCCCCTTGGACTTTCTCACCCGCATAACACCTTCTGCTGTCGTCTTTACAAATACTGAGGGCTCTGCACTTTTCATGTATGTCCACATTTTGTCGAAAAGAGCAATTTTGGAACGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU9586 False 2122 lncRNA 0.45 11 13272585 13302360
TU9590 False 649 lncRNA 0.35 3 13272585 13290719
TU9592 False 2200 TUCP 0.35 3 13285324 13311429
TU9587 True 2380 TUCP 0.46 4 13304276 13311429

Neighbor

gene id symbol gene type direction distance location
CI01000000_13152692_13175605 PDGFC coding downstream 96980 13151625 ~ 13175605 (-)
CI01000000_13117207_13118382 MRPL18 coding downstream 154203 13115994 ~ 13118382 (-)
CI01000000_13087976_13097052 SRPX2 coding downstream 173384 13087588 ~ 13099201 (-)
CI01000000_13069375_13070057 RNASEH2C coding downstream 202511 13069205 ~ 13070074 (-)
CI01000000_13061811_13064265 LSM11 coding downstream 208304 13061186 ~ 13064281 (-)
CI01000000_13350939_13358816 FAM198B coding upstream 47596 13349956 ~ 13358816 (-)
CI01000000_13360123_13365788 TMEM144 coding upstream 57763 13360123 ~ 13365788 (-)
CI01000000_13587788_13588280 NA coding upstream 285043 13587403 ~ 13588280 (-)
CI01000000_13599770_13622506 NA coding upstream 297410 13599380 ~ 13622506 (-)
CI01000000_13625996_13633130 LRIT3, LRIT3A coding upstream 323353 13625713 ~ 13633130 (-)
G8690 NA non-coding downstream 20594 13251732 ~ 13251991 (-)
G8672 NA non-coding downstream 59006 13213374 ~ 13213579 (-)
G8641 NA non-coding downstream 129085 13143287 ~ 13143500 (-)
G8624 NA non-coding downstream 151636 13120750 ~ 13120949 (-)
G8618 NA non-coding downstream 178620 13048401 ~ 13093965 (-)
G8731 NA non-coding upstream 66539 13368899 ~ 13375019 (-)
G8735 NA non-coding upstream 76212 13378572 ~ 13378893 (-)
G8737 NA non-coding upstream 77283 13379643 ~ 13379843 (-)
G8758 NA non-coding upstream 112445 13414805 ~ 13415251 (-)
G8982 NA non-coding upstream 251945 13554305 ~ 13558240 (-)
G8125 NA other downstream 2231676 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 2444990 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 2858072 10407395 ~ 10409950 (-)
G3931 NA other downstream 6869060 6157013 ~ 6403525 (-)
G3716 NA other downstream 7271816 6000407 ~ 6000769 (-)
G9036 NA other upstream 424440 13726800 ~ 13727090 (-)
G9602 NA other upstream 1038642 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 1082997 14200000 ~ 14436253 (-)
G10672 NA other upstream 2923927 16226287 ~ 16231126 (-)
CI01000000_16354158_16360016 NA other upstream 3060148 16353959 ~ 16360213 (-)

Expression


Co-expression Network