G109308 (zmp:0000001073,LOC107713869,LOC107692477,LOC107566287,LOC107564399)


Basic Information

Item Value
gene id G109308
gene name zmp:0000001073,LOC107713869,LOC107692477,LOC107566287,LOC107564399
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1113743 ~ 1195829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161533
atcttcatcctgcTGATGAAGTACAAGCTTCACAGCCAGCACTACAAGCAGAAGGCGGCTCGCGTCAGTAACGTCTGTTCTCAGACCAACGGTGGCCAGCAGGGGGCCGCATCGGCCCCTCCGCCGCGCTCGTCCTCGGGGGCCTCCAGCAAGCCTTCCGTCCCGCTCGGGCTGGACAGGCAAGAAGGGTCCCATGGCCTGGAGGGGGGCTACGGAGCACTGAAAGGCACCACGGTAGTGGACTTGAACCAGTACGGGAAATCGTTCAAAGAGGACGACTCCATATCGCAATAACAAAGGGTTCGATCCCGCCTCCCTTCCCATTCTCTCCACACCTCAACCcattctgtttcttttctgttGCCGGCGTCCTGCGGCCTTACAGAGGGGTTTCTCCTGTCCGAGGCAAACTCGCAATCTGGAAGCCAAAAGCAGAACGCCAGATTAAACGGGACTGGATCCAATCTATCAGTAGGACAAGCCGCGGTCGGAAGGCGATCTTCAATCCTTTATGCAAAACTCTCCCCAAGCCCTGGATATCATGTGCCTCTTCGGTGCATTTGAgcaatgttttctattttaaactgGAGGTCATCAAAGCATTCGATgggaagagagagggaaaacTCTGTGGATGTTCTTTGTGGGAAATACTATGACAAAATATCAGTGCGAAGCAGTGCCAAAGGACTGGATTTAACGTTCTCCTGAAGACCCGTGCGAATACGGACTCATCAAAGTTGGATCAGACATTGACGGGTCGTATCGAGTTAACATTTGTGGACCTTCTGGAGCACTTCATTATGGATTCCTCGGCTAATGACTCTCTTCATTGGGAAACGAAGGCCCGGATCGATCTTCAGCTGATTAACAAACATGGCGAGTGTGTTCTTGGGATCTGGAGATTAGGTCAAACAGGAGAGAACATCGATTATCACAACGCACTAAAACTTTCCCCATCTCCCGTATCATCACGGATTGAGGGTAAGACGCTCTTGAGAACTCTGGATCTGACAGACACTAAACACTCTCTGACAAATAAGtactcttcttcttcttcttcttcttcttctttttttttttttttttctcctccaatTGACTGTGGACGTCTTTGTATGTGAGGTACACCTTCAGCCATCTctgattttaatcatttgatttcaaggagaaaataatacaaaataaaaaaatgaaaatacggGATGGAATTTTATGCTTTCATAGGTACTCTGTGTggatttataaagaaataaagtatttttcttCAAGGCTCGtggaaatgatttttattaaccCAGAACTGGGCTTTTTCTGCTGTGATTATTTtctataatgaaatatattgaaaGGTTTCTCCGGCAGCTCTTTGGGGCTGAGTGTAATGGAAGTTAAGTCGAGCATACTCCGG
>TU161535
ACGCGCTAAAACTTTCCCCATCTCCCGTATCATCACAGATTGAGGGTAAGAGCCGCTCTTGAGAACTCTGGATCTGACAGACACTAAACACTCTCTGACAAATAAGtactcttcttcttcttcttcttcttcttcttttttttttttttctcctccaatTGACTGTGGACGTCTTTGTATGTGAGGTACACCTTCAGCCATCTctgattttaatcatttgatttcaaggagaaaataatacaaaataaaaaaatgaaaatacggGATGGAATTTTATGCTTTCATAGGTACTCTGTGTggatttataaagaaataaagtatttttcttCAAGGCTCGtggaaatgatttttattaaccCAGAACTGGGCTTTTTCTGCTGTGATTATTTtctataatgaaatatattgaaaGGTTTCTCCGGCAGCTCTTTGGGGCTGAGTGTAATGGAAGTTAAGTCGAGCATACTCCGG

Function

NR:

description
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161533 True 1411 lncRNA 0.46 2 1113743 1121705
TU161535 False 471 lncRNA 0.37 2 1113743 1195829

Neighbor

gene id symbol gene type direction distance location
LOC122361256 NA coding downstream 818758 294867 ~ 294985 (-)
LOC122361163 NA coding downstream 835269 278356 ~ 278474 (-)
LOC122361151 NA coding downstream 835664 277961 ~ 278079 (-)
LOC122361280 NA coding downstream 837638 275987 ~ 276105 (-)
LOC122361170 NA coding downstream 839226 274399 ~ 274517 (-)
LOC122361052 foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691 coding upstream 86482 1282311 ~ 1292313 (-)
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding upstream 300757 1496586 ~ 1510434 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding upstream 349458 1545287 ~ 1549931 (-)
si:ch73-341k19.1 LOC107551746 coding upstream 452538 1648367 ~ 1654527 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding upstream 460719 1656548 ~ 1662627 (-)
G109292 NA non-coding downstream 147669 965738 ~ 966074 (-)
G109283 NA non-coding downstream 303135 810033 ~ 810608 (-)
G109276 NA non-coding downstream 453391 659968 ~ 660352 (-)
G109273 NA non-coding downstream 505312 608080 ~ 608431 (-)
LOC122360679 NA non-coding downstream 528240 582333 ~ 585503 (-)
G109316 NA non-coding upstream 85041 1280870 ~ 1281255 (-)
G109320 NA non-coding upstream 129791 1325620 ~ 1325934 (-)
G109430 NA non-coding upstream 325454 1521283 ~ 1521485 (-)
G109425 LOC107714432,LOC107661002,LOC107551745,LOC107717891,LOC107697276,LOC107581694 non-coding upstream 332264 1528093 ~ 1542296 (-)
G109439 NA non-coding upstream 440587 1636416 ~ 1636997 (-)
G109287 NA other downstream 230991 882459 ~ 882752 (-)
G109275 NA other downstream 480846 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 545291 1741120 ~ 1964161 (-)
G109600 NA other upstream 1918013 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2898928 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 4036382 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4586838 5782667 ~ 5790534 (-)

Expression


Co-expression Network