G109425 (LOC107714432,LOC107661002,LOC107551745,LOC107717891,LOC107697276,LOC107581694)


Basic Information

Item Value
gene id G109425
gene name LOC107714432,LOC107661002,LOC107551745,LOC107717891,LOC107697276,LOC107581694
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1528093 ~ 1542296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161692
CTCGGACTGTCAGCTCGAGGAAATAACGCCATCTTGCCGTCCTGCTGCATGCCGTCCACCTGAACCGCTGTTTCCTGTGAGATCAATGCGTCGCGTGTGTCCGCTGTGTCTTTAAGCCGCATCTCCTGGTTTTGTTTTTCGGGCTGAATTGGTGCTCTATCTCCCGTTTTGTCCTGGGCAGCTCGTAGTCGGATTACTTCTCCTTGCAGCTGGTTGTATTTGCGCTGTAGCTCTGCCAGATCTCCTCGACCGCCCTCAGGACCGCCTGCCTCCAGCACTACTGCTGTAGTGGGACACAAGTCCTTCTGCATGTACACCTCCAGGATTGAGTCCTGCTTGATCACTGCAGCCTGCGGACGTAGCAACGATGAGTCGCCAAGCACGTGCTTTGTCTGAAATCTCAACATTTAGCGCGCACCTCTGTCTAAATCTCACCTGCAGTGCGTGAAGCTGAGTGCTCAGGTTCACAAGTCTTTGGCAAACCTCCTACAACACAAATAGTTCAGATAGTTATCTTTggtgttcattttgtttttttaaagcttccTTTAGGCGTACCTCGTTCAACATCTTGTCCTGCAGCTGGTTCCCATTCCTGTCCTGTGAaatgtaatgataaataatCGTGATGACGAATCCTCAATCCAATGTTTGCTGCAGTGCCAGCAGAGGAACattgtttgtgtaaaatatcAGACATTTACCTTGTTAGGCGGTCTGTTTATTTCATGGGTTCCGTTaactgatatttttcctatttcagcaaaaaaagaaTAGTGTACTTTAGATAATTAACGTCtagataattaaaaatgaaatatttaacacGGACCACAATGTATGCCAATGATAAAAAGAAGGTACCTTTTGTTTTAGAGGTGAATTGTACCTCTGTCGATTCACCGTTCAATCTGCCGGACTGTGGACGCTCAATGCAGGAACCCAACAGCACTTCACTTAGCCTGTCCACTgaagtttgaaataaataagaaagcaGTGTGAATGCCCTTCATTACCGAGTGTACTCTATAATGCTGTACGCTCCTCTGCTTACCCTCAACAATGGCGTCATTCAGTAGCTTTTCCGCCTGGGGAGCGTAGGGCGTATCTGCTCTGAATATATTTCTAGAGTTTGAGGGAACGTTAACATTCTGACCTCCGGTGGCCTCGGCCAAATCAGAAAACAACGTCACGCGCTCCTGTAACAGCTCCAAAACTTCACGATCCTTCTGCTGGATATcagctagagagagagagagcaagaaaccaaacaaaaatgtaaaaaaaaaaaaactgagcaaagCTAAGGCGACAGATTTTTGATAGAAACCTCTGAGCCGTCGTAGCAAAGCTTTGTCCTCGGTTTCGATCAGAGGGAAATCCTCTCTCGATGGACAGCTGCATTGAGAGGAATAAAGAGATGAAGCGATTAAGTGTTTGGTGTTGCTTGTGTGGAGATATATTTCAGAGGTGCAGATGTTGGGGCAAAGAATTTTGAATTGACTCTGACTTGCTCACTGTCTGCTGAATGATTTTCATCCAAGTGTTTCTGTCGTCTTTGGAGGCGGCGTGGAGCTCGTACATCTCTGGAGGTGTGGAGTGACTGATGAGGAACATTCCTCGCTCCTGATTGGCTATATCTCTCACAATCAAATTCTGAAGGCACAGTACTGCCGGTTTGtcctgtgaaaaagaaaaattgcatattttaaaaacacgcCACGTTGAACATTAAGGTGTTTCGAAGTTGTCTTTATCTGGAGTAAGTAAACTAAATTCAACATTAACTAAAAAGAAGATTCTACTTTTATATTGCAGGTAATCCATCTTTTGTCTATAGAGAAATTAAGTtacataaagtaacattttgGCATATGTCTTTCAAATTCAATCAAAATGAAAGGTTTGGATTACACCATAAAAGTCATTGGATGAAAAGGATGAAACAACTTAGAAATAGTTTTCTGTGGCACAAAGTAGGGCTAAAATAACTCTAAAAAATGTCGTAATAGTCAATATTGCTAATTATCACAATCAATTTTTGAATCTCTATTTATCTCTACTTTAAAGGCA

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161692 True 2073 lncRNA 0.42 2 1528093 1542296

Neighbor

gene id symbol gene type direction distance location
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding downstream 17659 1496586 ~ 1510434 (-)
LOC122361052 foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691 coding downstream 235780 1282311 ~ 1292313 (-)
LOC122361256 NA coding downstream 1233108 294867 ~ 294985 (-)
LOC122361163 NA coding downstream 1249619 278356 ~ 278474 (-)
LOC122361151 NA coding downstream 1250014 277961 ~ 278079 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding upstream 2991 1545287 ~ 1549931 (-)
si:ch73-341k19.1 LOC107551746 coding upstream 106071 1648367 ~ 1654527 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding upstream 114252 1656548 ~ 1662627 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding upstream 142608 1684904 ~ 1704721 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding upstream 175739 1718035 ~ 1720115 (-)
G109430 NA non-coding downstream 6608 1521283 ~ 1521485 (-)
G109320 NA non-coding downstream 202159 1325620 ~ 1325934 (-)
G109316 NA non-coding downstream 246838 1280870 ~ 1281255 (-)
G109308 zmp:0000001073,LOC107713869,LOC107692477,LOC107566287,LOC107564399 non-coding downstream 332264 1113743 ~ 1195829 (-)
G109292 NA non-coding downstream 562019 965738 ~ 966074 (-)
G109439 NA non-coding upstream 94120 1636416 ~ 1636997 (-)
G109440 NA non-coding upstream 98481 1640777 ~ 1641312 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding upstream 100334 1642630 ~ 1643043 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding upstream 101577 1643873 ~ 1644173 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding upstream 103318 1645614 ~ 1646149 (-)
G109287 NA other downstream 645341 882459 ~ 882752 (-)
G109275 NA other downstream 895196 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 198824 1741120 ~ 1964161 (-)
G109600 NA other upstream 1571546 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2552461 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3689915 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4240371 5782667 ~ 5790534 (-)

Expression


Co-expression Network