G109460


Basic Information

Item Value
gene id G109460
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1736188 ~ 1997307 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161742
GGTGGGATTTAGCATACTAAATGACTGGATAAATGTCATATTactgaacaataaaaatagcaaaatagtTTGCAATCTGATTTCAGCAAGAAAAACGAAAGGACAACCAAACACTGAATAgctataaaatattgttttaattaaatgcctTTTGAATGAATCTAGCAAAGACAGAAAAGCAATCACCGCaattaaaataaaggaaaacgCACATTTGAACCATTTCATTATCGTTTTAACCGTGTTATTAGTAGTGTGGAGTTGCAGCATCTTCTGTAATTATTAGTCATACAAGGAATGATATAAACAGCTGAAAGTTTGTACACAAACAGCATTGTCTCGAGAACAGTCTGCCGAGAAGTCGCCTGGTGGTGGCGTAAGCTCTGCGGTTTTGCCCGCTGTCTCTCTGTCTCGGTCTGGGGTAAAACACTCACCGATTCCTCTAAACGAATAATCACTCTCAGCTGTGTGTCGTCTGCAGCACTGATCTACAGTCCCCACAACCCCCTAAACACAGACAGCCAGTCTGCCTACAGGTTGTAAAtaaataaggggggaaaaaaaaaaaaaatactgtaaggTTAATTTGTTGGAAACAGTGCGATATGATAATGTATTTGTATGGCCTCTGACTTGCAATACATACCCATTTCAAAGATCAAACATTTGCTCTGAATGAATAGAAAAAACTATTTCCAAgcggatgaaaaaaaaaatgtaaattagaaGAAAGCCGGGAAAAAGAGCTTCGTTTGTGCTATATCCCACTAACATTCGTCTGGGATCGTGACTAATCGGCTCGTGGGATGATCACCTCCACTGAGCTGTGCGACCCCCTACATGGCTGCCAAAACCAGACACTGACACATTTAATCCGGTGAATGAAGTCACCGATATTTTTTTCCATCGTTTTTTTCCATCTTCATTTTACACCTCATCTGACCCGGACGCATACGTAAAACGTGTTGATGATCAAGCCCCATGGCGGTCGTTTAGTGGcctcattaaacacaaaaaaggatTCCTTCTGATAATTAACAGATCTGAGGGTCTAAGCGTACGTTACTCACAAATTAGAGAGTGGGAACGGGAGTGTTAAAGAGTTAATGGGGAGGGGATACAATCACATCGAGCTTGTGCAAATGTATGAATGTGAGAATTTTAAAGGCAGCAAGAACAGGGGACCCATCTGAGAAGTCGTTTCGAGAGAGTCTTCTTCGTGTGAAGCGCACAGAACGCCGTTGCTTGATGACCATCGCTCGATAAGGCCACTGCAGGgatgagaatgagaaaacaGGAAGAAATGGTGTGCCATCAGAACGTCTCTGCAGATGCTGTATCCCTAATTCTCCATCGACGGACAACTGGATCTTCTGGAATCAGTCACTTGGTGCCGGGATGATGCTGATGTGGAGAAAGTTGTCTGGGTGGCTCAAGTGTTCGCTCAACCACTGGATGGGTGTTTCCAGCAGCGGTTCGATGCCGTGAATCATAACCTGGAATCTCTTTGGCTCG
>TU161743
TAgctataaaatattgttttaattaaatgcctTTTGAATGAATCTAGCAAAGACAGAAAAGCAATCACCGCaattaaaataaaggaaaacgCACATTTGAACCATTTCATTATCGTTTTAACCGTGTTATTAGTAGTGTGGAGTTGCAGCATCTTCTGTAATTATTAGTCATACAAGGAATGATATAAACAGCTGAAAGTTTGTACACAAACAGCATTGTCTCGAGAACAGTCTGCCGAGAAGTCGCCTGGTGGTGGCGTAAGCTCTGCGGTTTTGCCCGCTGTCTCTCTGTCTCGGTCTGGGGTAAAACACTCACCGATTCCTCTAAACGAATAATCACTCTCAGCTGTGTGTCGTCTGCAGCACTGATCTACAGTCCCCACAACCCCCTAAACACAGACAGCCAGTCTGCCTACAGGTTGTAAAtaaataagggggaaaaaaaaaaaaaaaatactgtaaggTTAATTTGTTGGAAACAGTGCGATATGATAATGTATTTGTATGGCCTCTGACTTGCAATACATACCCATTTCAAAGATCAAACATTTGCTCTGAATGAATAGAAAAAACTATTTCCAAgcggatgaaaaaaaaaatgtaaattagaaGAAAGCCGGGAAAAAGAGCTTCGTTTGTGCTATATCCCACTAACATTCGTCTGGGATCGTGACTAATCGGCTCGTGGGATGATCACCTCCACTGAGCTGTGCGACCCCCTACATGGCTGCCAAAACCAGACACTGACACATTTAATCCGGTGAATGAAGTCACCGATATTTTTTTCCATCGTTTTTTTCCATCTTCATTTTACACCTCATCTGACCCGGACGCATACGTAAAACGTGTTGATGATCAAGCCCCATGGCGGTCGTTTAGTGGcctcattaaacacaaaaaaggatTCCTTCTGATAATTAACAGATCTGAGGGTCTAAGCGTACGTTACTCACAAATTAGAGAGTGGGAACGGGAGTGTTAAAGAGTTAATGGGGAGGGGATACAATCACATCGAGCTTGTGCAAATGTATGAATGTGAGAATTTTAAAGGCAGCAAGAACAGGGGACCCATCTGAGAAGTCGTTTCGAGAGAGTCTTCTTCGTGTGAAGCGCACAGAACGCCGTTGCTTGATGACCATCGCTCGATAAGGCCACTGCAGGgatgagaatgagaaaacaGGAAGAAATGGTGTGCCATCAGAACGTCTCTGCAGATGCTGTATCCCTAATTCTCCATCGACGGACAACTGGATCTTCTGGAATCAGTCACTTGGTGCCGGGATGATGCTGATGTGGAGAAAGTTGTCTGGGTGGCTCAAGTGTTCGCTCAACCACTGGATGGGTGTTTCCAGCAGCGGTTCGATGCCGTGAATCATAACCTGGAATCTCTTTGGCTCGTCTGGAAtgagtgtgaaagagagaaaaggtcaCAACTGAGCATTAAGGGAAAGTACTATTCAAGTCGcgtccaaaaaacaaaaaaagaaaaagaaaagt
>TU161744
TAgctataaaatattgttttaattaaatgcctTTTGAATGAATCTAGCAAAGACAGAAAAGCAATCACCGCaattaaaataaaggaaaacgCACATTTGAACCATTTCATTATCGTTTTAACCGTGTTATTAGTAGTGTGGAGTTGCAGCATCTTCTGTAATTATTAGTCATACAAGGAATGATATAAACAGCTGAAAGTTTGTACACAAACAGCATTGTCTCGAGAACAGTCTGCCGAGAAGTCGCCTGGTGGTGGCGTAAGCTCTGCGGTTTTGCCCGCTGTCTCTCTGTCTCGGTCTGGGGTAAAACACTCACCGATTCCTCTAAACGAATAATCACTCTCAGCTGTGTGTCGTCTGCAGCACTGATCTACAGTCCCCACAACCCCCTAAACACAGACAGCCAGTCTGCCTACAGGTTGTAAAtaaataagggggaaaaaaaaaaaaaaaaatactgtaaggTTAATTTGTTGGAAACAGTGCGATATGATAATGTATTTGTATGGCCTCTGACTTGCAATACATACCCATTTCAAAGATCAAACATTTGCTCTGAATGAATAGAAAAAACTATTTCCAAgcggatgaaaaaaaaaatgtaaattagaaGAAAGCCGGGAAAAAGAGCTTCGTTTGTGCTATATCCCACTAACATTCGTCTGGGATCGTGACTAATCGGCTCGTGGGATGATCACCTCCACTGAGCTGTGCGACCCCCTACATGGCTGCCAAAACCAGACACTGACACATTTAATCCGGTGAATGAAGTCACCGATATTTTTTTCCATCGTTTTTTTCCATCTTCATTTTACACCTCATCTGACCCGGACGCATACGTAAAACGTGTTGATGATCAAGCCCCATGGCGGTCGTTTAGTGGcctcattaaacacaaaaaaggatTCCTTCTGATAATTAACAGATCTGAGGGTCTAAGCGTACGTTACTCACAAATTAGAGAGTGGGAACGGGAGTGTTAAAGAGTTAATGGGGAGGGGATACAATCACATCGAGCTTGTGCAAATGTATGAATGTGAGAATTTTAAAGGCAGCAAGAACAGGGGACCCATCTGAGAAGTCGTTTCGAGAGAGTCTTCTTCGTGTGAAGCGCACAGAACGCCGTTGCTTGATGACCATCGCTCGATAAGGCCACTGCAGGgatgagaatgagaaaacaGGAAGAAATGGTGTGCCATCAGAACGTCTCTGCAGATGCTGTATCCCTAATTCTCCATCGACGGACAACTGGATCTTCTGGAATCAGTCACTTGGTGCCGGGATGATGCTGATGTGGAGAAAGTTGTCTGGGTGGCTCAAGTGTTCGCTCAACCACTGGATGGGTGTTTCCAGCAGCGGTTCGATGCCGTGAATCATAACCTGGAATCTCTTTGGCTCG

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161742 True 1515 lncRNA 0.42 2 1736287 1997307
TU161743 False 1497 lncRNA 0.43 2 1736188 1997189
TU161744 False 1399 lncRNA 0.43 2 1736287 1997189

Neighbor

gene id symbol gene type direction distance location
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 16073 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 31467 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 73561 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 81661 1648367 ~ 1654527 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding downstream 186257 1545287 ~ 1549931 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 3474 2000781 ~ 2010666 (-)
LOC122360106 NA coding upstream 703014 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 902006 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 918348 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1686811 3684118 ~ 3699070 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding downstream 90039 1645614 ~ 1646149 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding downstream 92015 1643873 ~ 1644173 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding downstream 93145 1642630 ~ 1643043 (-)
G109440 NA non-coding downstream 94876 1640777 ~ 1641312 (-)
G109439 NA non-coding downstream 99191 1636416 ~ 1636997 (-)
G109481 NA non-coding upstream 222259 2219566 ~ 2225804 (-)
G109482 NA non-coding upstream 276245 2273552 ~ 2273936 (-)
G109485 NA non-coding upstream 281709 2279016 ~ 2279655 (-)
G109490 NA non-coding upstream 403379 2400686 ~ 2400892 (-)
G109500 NA non-coding upstream 515468 2512775 ~ 2513567 (-)
G109287 NA other downstream 853436 882459 ~ 882752 (-)
G109275 NA other downstream 1103291 632465 ~ 632897 (-)
G109600 NA other upstream 1116535 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2097450 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3234904 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 3785360 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 3819733 5817040 ~ 5818618 (-)

Expression


Co-expression Network