prdm1a (prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686)


Basic Information

Item Value
gene id prdm1a
gene name prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1741120 ~ 1964161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161747
AAGCCTCACTGCCATGCTCGCTCAGACGATATGTAGATAATGCAGGAAATGGAGGGGTTTGATGTGGAGAGCATGGTAGAGAAACAGATTTTTGGCCTGCTCTGGCAGGAGATGGATTTTAAGGCGTCTTATCACAAAGGTAGCACTGGAGGAGATCTGCACCCCCCACCACCTGCATTATCTACATATCGTCTGAGCGAGCATGGCAGTGAGGCTTCTGTCATCAAGGTTCATTGCAGCAGCCCTATCCAGCTCCTACCTGTCAAGGTTAAAAAGGAGACAGAGGAGGCCATGGAAACCTAGCTAACTAGAGGCTTGCCTGACTAGCTCTCTAGGCCAGGTTATGGACAGCCACACGTATACGTAATTCTTCTCAAAGAATCAGGCTATGGCCTTTATGTTCAGGGACTTGAGTACTCAGGGCTAACAGACATCGTTCCAGTCCATCAGTGGTCCAGTATGTCCGACgcaaattaaaaagacaatcatattcttttattaatattattattattgttgttattaatattatttgctcTTCTtggtgtttattttagtttgatacgtaatctatttaatttattgttcaaCGCATCATCCTTCACAACCAATACgtggaaaaaatgtttacaatgacTGGTTATATCATTgtaatttactgttttatatatttccttttttctttattcttttgtgGATAGTAACTGTAAATAGTGTCCCAGTTGACTGTGATTTCATGCATGACTGCAAAGAGCTCACCACAttcaggtttatttttaatgtgggCTTTGAAGTCAGAGGTAGACCTTTTTGTTgaaggcatttttttaaactataggAGAGGTCAGAGGTTACATATCTATGTGTACGtgttttacataacatttattcTCTTAAAGTTGAGCTCTACACAATATAATAAGTACAAAAAgggcatattatatattaccgACAACTGTTACCTCAAATgtcagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtgtGTGCTTGAACTGAGAGACGTCAGAGTTTGTTTTGCTACTTGAAGAGGAAATCAAATGTCCCAATGTGCAGGTCTACATGTGGTCCAAAGAATAGCAGTCTGTCTAGCTGTCACACACAGGCTGTGAGACTGACACTGCATTTTCTTACTTATGTGTGGCACATTACTGAAACCAAAACGATAAAGAAACGAGAATGTGGAAAAGATAACCAAAGTGAactcttttgtttattttcagagaTTTGTTCAAGTTCAGCGTGAGCTGCTGCAACTGTCTGCTCTGCAGGTCTGTGATGATGTTTATGGACACTCCACATCTCTTTGGCCTTTGTATGCACtggttcttttttcttttgtcttacGTTTGtaccttttctttgtttttatgattttgtgtAGCGATATTAGTAGGGCGGTTTATCAGCAACGTGTGCTGCGAGGTAGTAGCGTCTCATACACTTTCTGTCCTAAAGTATGACCAAAGTCTACACCTCATCTtcagctttaaattaaaaaaaaagactgtctttgtttacatactGGTTTACGTAGCTATTTAAGTACAGCtttgacaaaatgtaaattataatataaatcttCACTGATCTAAAGCATTTTTgtctcttgtgtgtgttttttttttcatgtaaaacgGGGCTCATTCTCCTCTAAACCATTATATGGCACAAAAATTCACCATAGCACTTTCCTAAACATTCATA
>XM_043260182.1
ACACACAGCCTCTATGTGTGGCTGGGACCAGAGCGTCCTGgcTGCTTCTCATCACAGCTCGGCCATGCTGACTACTGAGGATCACCCTACACCGTGAGACAATGAGGAGCTCAAGATGGATGTAGAGGATGTAGACATGACAAAATGGACGGAGGAAGAGTTTGAGGAGAAATGCACGTACATCGTAAAAGACCACACCTGGGAGGGTCCTCTGGAAAACACAGAGCTCACCCGGGGGGCGTCCTTACCCAGAAACCTGGCATTCAAACACCCAGCAGACTCTAAAGAGGTAATCGGTGTAGTAAGCAGAGAATACATCCCTAAAGGCACACGGTTTGGCCCTCTTGTGGGAGAAAGTTACACTGCAGAAAATGTCAGCAAAGATGCGAACAGGAAGTACTTCTGGCGGATATACTCAAGTGGGGAGTTCCATCATTTTGTGGATGGACTAGATGAAGAGAAGAGTAACTGGATGCGTTATGTGAATCCAGCTCACTCCCAGCAGGAACAGAACCTTGCAGCCTGCCAAAACGGCATGAACATCTATTTCTACACGGTCAAGGCCATTCCTGCAGATCAGGAGCTACTGGTGTGGTACTGCCCTGAGTTTGCCCGTCGTCTCAACTATCCTGCCTCTGGAGAAATTATGATGCAAAAACTCAagCAGAGCCTGATCGAAGCCACACAGCAAGCGACTGAAGTCAAGCACCCAGTGAAAAGAGAACACAGTGTTTCAGAGATTTTGAAAGATGTACTGCAAGAACCCAGCAGACCACTTCCCACGTCCCGTTGCCCCAACAGCCCAGACCGACCTCTTTACCCCCAGTGCTGTCTATCCACTCCGCCCTTCCCTAGCGAAGACTTTTTAAAGACTACCACAGTGTTTGGCCTCCCGAACCGCTCTCACAGAAAGTGTTCAGTGACACCCAGCCCTTCAGCACACAGCAGTCCGGAGAGCAGTCCAGAAAGCAGTCCCACACCAGCATCCCTTGAGCCAAGAGAcaccttctctttctctccagcaCTCTATAGCCGTGGCCTGAACCACTACCCAGGCTACTCACCAGCAGCAGGCTCCATGCCATTCTACCCTAACCCGCACTATTCTCGCTACCTCATGCCCCACTACCCTGTTAGTAGTTTGAGTGGGCCACCTACTTTGGGCGGTATATCACACATGTACCCCTTTTATAGTGGCTTGGCCCCTCATGTACCCTTCCCACCTGGCATGCTTCCGTCCGAGGGTAGTCGACAATTTCTGCTTCCACCTGACTCTCCGGCTCAGGACATCCTGCTACCAGCGGCCAGTGCCTTTTCTGCAGCCACCTCTCTGAAAGACAAACCAGCTCATGGGCATGGGCATGGGCATGGGCACCCTTATGCTCCCGCTGGTGGGTCCCCAACAGCTGGCTCTGCAGCCTCTACAGGACGTGTTCCTACCAAGCCTACCTCAGCAATCCTAAATACCAGCCGCTCAGAGGAAAAGGCGATCAATCTCAGCAAGATGAAACAAGGCTCCTCAGGCTACAAAAGTCTAGATTACCCACTTAAGAAGCAGAACGGGAAGATCAAGTATGAGTGCAATGTCTGCACCAAGACTTTTGGTCAGCTGTCCAATCTCAAGGTGCACCTGCGAGTCCATAGCGGTGAACGACCCTTTAAGTGTCAGACCTGCAATAAAGGTTTCACTCAGCTGGCCCACCTGCAGAAACACTATTTGGTCCACACAGGAGAGAAACCCCACGAGTGCCAGGTGTGTCACAAGCGCTTCAGCAGCACTAGCAACTTGAAGACCCATTTGCGACTGCACTCTGGTGAAAAGCCCTACCAGTGCAAGATCTGCCCAGCCAAGTTTACACAGTTTGTCCACCTCAAGCTGCACAAACGGCTGCACACAAAACGTCCACACCAATGCCCGCATTGCCACCGTAACTACATTCACCTCAGCAGCCTGCGGCTCCACGTCAAAGGCTACTGCTTAGCGGTTTCTCTCCCCAGCTGCAGTCTTGATGAACTCAATCCAGAGCGAGAAATCGAGCGCTTTGACATCAGCGATAATGCGGATAGACTGGAGGAAATGGAGGGGTTTGATGTGGAGAGCATGGTAGAGAAACAGATTTTTGGCCTGCTCTGGCAGGAGATGGATTTTAAGGCGTCTTATCACAAAGGTAGCACTGGAGGAGATCTGCACCCCCCACCACCTGCATTATCTACATATCGTCTGAGCGAGCATGGCAGTGAGGCTTCTGTCATCAAGGTTCATTGCAGCAGCCCTATCCAGCTCCTACCTGTCAAGGTTAAAAAGGAGACAGAGGAGGCCATGGAAACCTAGCTAACTAGAGGCTTGCCTGACTAGCTCTCTAGGCCAGGTTATGGACAGCCACACGTATACGTAATTCTTCTCAAAGAATCAGGCTATGGCCTTTATGTTCAGGGACTTGAGTACTCAGGGCTAACAGACATCGTTCCAGTCCATCAGTGGTCCAGTATGTCCGACgcaaattaaaaagacaatcatattcttttattaatattattattattgttgttattaatattatttgctcTTCTtggtgtttattttagtttgatacgtaatctatttaatttattgttcaaCGCATCATCCTTCACAACCAATACgtggaaaaaatgtttacaatgacTGGTTATATCATTgtaatttactgttttatatatttccttttttctttattcttttgtgGATAGTAACTGTAAATAGTGTCCCAGTTGACTGTGATTTCATGCATGACTGCAAAGAGCTCACCACAttcaggtttatttttaatgtgggCTTTGAAGTCAGAGGTAGACCTTTTTGTTgaaggcatttttttaaactataggAGAGGTCAGAGGTTACATATCTATGTGTACGtgttttacataacatttattcTCTTAAAGTTGAGCTCTACACAATATAATAAGTACAAAAAgggcatattatatattaccgACAACTGTTACCTCAAATgtcagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtgtGTGCTTGAACTGAGAGACGTCAGAGTTTGTTTTGCTACTTGAAGAGGAAATCAAATGTCCCAATGTGCAGGTCTACATGTGGTCCAAAGAATAGCAGTCTGTCTAGCTGTCACACACAGGCTGTGAGACTGACACTGCATTTTCTTACTTATGTGTGGCACATTACTGAAACCAAAACGATAAAGAAACGAGAATGTGGAAAAGATAACCAAAGTGAactcttttgtttattttcagagaTTTGTTCAAGTTCAGCGTGAGCTGCTGCAACTGTCTGCTCTGCAGGTCTGTGATGATGTTTATGGACACTCCACATCTCTTTGGCCTTTGTATGCACtggttcttttttcttttgtcttacGTTTGtaccttttctttgtttttatgattttgtgtAGCGATATTAGTAGGGCGGTTTATCAGCAACGTGTGCTGCGAGGTAGTAGCGTCTCATACACTTTCTGTCCTAAAGTATGACCAAAGTCTACACCTCATCTtcagctttaaattaaaaaaaaagactgtctttgtttacatactGGTTTACGTAGCTATTTAAGTACAGCtttgacaaaatgtaaattataatataaatcttCACTGATCTAAAGCA

Function

symbol description
prdm1a Enables DNA-binding transcription factor activity. Acts upstream of or within several processes, including negative regulation of macromolecule metabolic process; positive regulation of cell differentiation; and skeletal system morphogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; ectoderm; fin bud; mesoderm; and nervous system. Orthologous to human PRDM1 (PR/SET domain 1).
prdm1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: PR domain zinc finger protein 1-like

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0007521 muscle cell fate determination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0000578 embryonic axis specification biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU161747 False 1737 lncRNA 0.39 2 1741120 1964161
XM_043260182.1 True 3658 mRNA 0.46 17 1741228 1750972

Neighbor

gene id symbol gene type direction distance location
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding downstream 21005 1718035 ~ 1720115 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 36399 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 78493 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 86593 1648367 ~ 1654527 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding downstream 191189 1545287 ~ 1549931 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 36620 2000781 ~ 2010666 (-)
LOC122360106 NA coding upstream 736160 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 935152 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 951494 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1719957 3684118 ~ 3699070 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding downstream 94971 1645614 ~ 1646149 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding downstream 96947 1643873 ~ 1644173 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding downstream 98077 1642630 ~ 1643043 (-)
G109440 NA non-coding downstream 99808 1640777 ~ 1641312 (-)
G109439 NA non-coding downstream 104123 1636416 ~ 1636997 (-)
G109481 NA non-coding upstream 255405 2219566 ~ 2225804 (-)
G109482 NA non-coding upstream 309391 2273552 ~ 2273936 (-)
G109485 NA non-coding upstream 314855 2279016 ~ 2279655 (-)
G109490 NA non-coding upstream 436525 2400686 ~ 2400892 (-)
G109500 NA non-coding upstream 548614 2512775 ~ 2513567 (-)
G109287 NA other downstream 858368 882459 ~ 882752 (-)
G109275 NA other downstream 1108223 632465 ~ 632897 (-)
G109600 NA other upstream 1149681 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2130596 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3268050 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 3818506 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 3852879 5817040 ~ 5818618 (-)

Expression


Co-expression Network